Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 333 3e-86
seq6213 320 2e-82
seq21559 248 1e-60
seq14731 187 3e-42
seq1192 158 1e-33
>seq10156
Length=9543
Score = 333 bits (368), Expect = 3e-86
Identities = 566/817 (69%), Gaps = 5/817 (1%)
Strand=Plus/Plus
Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710
||||| | || |||||||| || || | ||||| || ||| |||| || || |
Sbjct 601 CTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAG 660
Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTG 168770
|| | ||||| |||||||| ||||||||| | | || ||||| |||||||||||||| |
Sbjct 661 GTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCG 720
Query 168771 GTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGAC 168830
|||||| || | | | | ||||| || | || | || ||||||||| |
Sbjct 721 GTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTG 780
Query 168831 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890
|||||||| | | ||| | |||||| |||||||| | |||| ||||||||||
Sbjct 781 AGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCAC 840
Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950
| | | || || |||| | ||| | | |||||| ||||||| || || |||
Sbjct 841 CTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTA 900
Query 168951 ATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGC 169010
||||||||||| |||||||| || || |||||||| ||| | ||||||| || |||
Sbjct 901 ATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGC 960
Query 169011 ACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAG--CAGGTATGTTCGGTGGATC 169068
||||||| |||||||| || || || ||| || |||| | ||| ||| |||| ||
Sbjct 961 ACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTA--TTCAGTGGCTC 1018
Query 169069 TCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGA 169128
|||| || ||||||||||| | ||||| | | | | || ||||| || || ||
Sbjct 1019 CTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCACAGA 1078
Query 169129 GGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGT 169188
| |||||| || | | |||| |||||| |||| |||||||| || |||||| |
Sbjct 1079 AAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTAT 1138
Query 169189 TGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAG 169248
|| || ||||| || || || ||| ||||| | ||||| |||||||||||||| |
Sbjct 1139 AGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCG 1198
Query 169249 AAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGG 169308
| | || |||||| ||||| | || || | || | ||| | | || | |
Sbjct 1199 TTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTAAG 1257
Query 169309 TATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGT 169368
||| | |||||||| |||||| | |||||||| ||||| || |||| || || |||
Sbjct 1258 TATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATAG 1317
Query 169369 TAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGA 169428
| | ||| || ||| || |||| ||| | |||| | | ||| ||||||||||
Sbjct 1318 TGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGGA 1377
Query 169429 AGTAATGCATGAGCGTAACGCTCACAACTTCCCACTA 169465
|| |||||||| | ||| ||||| || ||||| |||
Sbjct 1378 GGTTATGCATGAACATAATGCTCATAATTTCCCTCTA 1414
>seq6213
Length=1415
Score = 320 bits (354), Expect = 2e-82
Identities = 589/862 (68%), Gaps = 41/862 (5%)
Strand=Plus/Plus
Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710
||||| | || | ||| || || || || ||||| || |||| |||| | || ||
Sbjct 282 CTCTACTTTACGAAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATAT 341
Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTG 168770
|| | ||||| ||||||| ||||||||||| | ||||| ||||||||||||||||
Sbjct 342 GTTTGCACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTG 401
Query 168771 GTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGAC 168830
||||||| || | | | | ||||| || | || | || ||||||||| |
Sbjct 402 GTCCTTATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTG 461
Query 168831 AGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 168889
|||||||| ||| | || | ||||||| | |||||| | |||||| ||||||||
Sbjct 462 AGTGGGAACTTAGTTTCCAT-CGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCT 520
Query 168890 CCAGT---ATCT------GCAGCATT--TG-------CAGT------------------- 168912
|| || |||| || | || || || |
Sbjct 521 CCCGTGGCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTG 580
Query 168913 ATTCCTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTT 168971
||| |||| | |||||| | || |||| |||| | ||||||||||| | ||||||| |
Sbjct 581 ATTTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGT 639
Query 168972 CTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCT 169031
|||| || |||||||| ||| |||||||||||| ||||||||||| |||||||| || |
Sbjct 640 CTGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCAT 699
Query 169032 TCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTT 169091
| || ||| ||| ||||| | | ||||| || || |||||| | ||||||||||
Sbjct 700 TTCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTT 759
Query 169092 CACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTT 169151
| ||||| | | | | || || || || || || | |||||| || | ||||
Sbjct 760 TCTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 819
Query 169152 ACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTA 169211
| |||||| |||| ||||||| ||||||||| | || || ||||| || || ||
Sbjct 820 AATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCC 879
Query 169212 GATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAG 169271
|||| ||||| |||| |||||||||||| | | || | || |||||| || |||
Sbjct 880 GATTGATCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAG 939
Query 169272 TGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACT 169331
| || || ||||| | ||||| || ||| | ||||| | || ||||| | ||||
Sbjct 940 ATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACC 999
Query 169332 TGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACAT 169391
| ||| || ||||| || || | || || ||| | ||| | ||| || |
Sbjct 1000 TAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTT 1059
Query 169392 GGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTC 169451
||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 1060 GGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 1119
Query 169452 ACAACTTCCCACTAGACTTAGC 169473
| |||||||| |||||| ||||
Sbjct 1120 ATAACTTCCCTCTAGACCTAGC 1141
>seq21559
Length=2991
Score = 248 bits (274), Expect = 1e-60
Identities = 498/732 (68%), Gaps = 5/732 (1%)
Strand=Plus/Plus
Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559
||| |||| ||||| |||| | |||||| |||| ||||| ||||| || || |||||
Sbjct 1896 TGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCCCT 1955
Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618
|||||| || | | | ||| || ||||| || || ||||| || | || || ||
Sbjct 1956 ACTTTATTGACCGTAA-ATTTTGTATTTATTGTAGCTTTCATTGCAGCGTCTCCAGTAGA 2014
Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678
||| || || || |||||| | || ||||| | || |||||||| || || |
Sbjct 2015 TATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATTATTTT 2074
Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738
||| || ||| ||| | || | ||| | || || |||||||| ||||||||
Sbjct 2075 TTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGGGAAGC 2134
Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798
||| | || ||||| |||||||||||||| || ||||| || | | | | ||||
Sbjct 2135 AGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTATACTT 2194
Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858
| | || | || || |||||| | |||||||| | | ||| || |||||
Sbjct 2195 TTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGTAT 2254
Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918
| | |||||||| | |||| ||| |||| || || | || || | | | ||| |
Sbjct 2255 GCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTCTT 2314
Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT-TTCTGGAA 168977
| |||||| ||||||| || || | ||||||||||||| ||| ||| |||| | |
Sbjct 2315 AATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTCT-GTA 2373
Query 168978 CATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATA 169037
| |||||||| ||| | |||||||||| || | |||| |||||||| || || || |
Sbjct 2374 CTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTTCACA 2433
Query 169038 TGGCAGGAGTAGCAGGTATGTTCGGTGGAT-CTCTATTCTCCGCAATGCATGGTTCACTT 169096
|| || ||||| || | ||| | | | || |||| | |||||| ||| |
Sbjct 2434 TGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATAATTCCTTG 2493
Query 169097 GTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAG 169156
| ||| ||| | | || || || || || || | |||||| || | | ||||
Sbjct 2494 GGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTACCGA 2553
Query 169157 TTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTA 169216
||||||||||| |||||||| ||||||||||| || || ||||| || || || ||||
Sbjct 2554 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 2613
Query 169217 ATCTTCCAGTAT 169228
||||| || |||
Sbjct 2614 ATCTTTCAATAT 2625
Score = 84.2 bits (92), Expect = 2e-11
Identities = 173/257 (67%), Gaps = 9/257 (4%)
Strand=Plus/Plus
Query 169226 TATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTA 169285
||||| |||||||||||||| | | | || |||||| ||| | | | || ||
Sbjct 2671 TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATA 2730
Query 169286 TGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAAC 169345
|| | ||||| || || | ||||| | || || || ||||| | |||| | |||
Sbjct 2731 GGTATCTGGTTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAAC 2790
Query 169346 TTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGT---- 169401
|| || |||| || || ||| | | ||| || ||| || |||| ||| |
Sbjct 2791 TTCAATCAATATGTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATT 2850
Query 169402 -AC----TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAAC 169456
|| ||||| | | ||| |||||||||| || |||||||| ||||| ||||| |||
Sbjct 2851 AACTGGGTTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAAC 2910
Query 169457 TTCCCACTAGACTTAGC 169473
||||| |||| | ||||
Sbjct 2911 TTCCCTCTAGGCCTAGC 2927
>seq14731
Length=28268
Score = 187 bits (206), Expect = 3e-42
Identities = 238/326 (73%), Gaps = 4/326 (1%)
Strand=Plus/Minus
Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207
||||||| ||||||||||| |||||||| ||||||||||| | || ||||| || ||
Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079
Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCAC--TTCTTCC 169265
|| ||| ||||| || |||| ||| |||||||||| | |||| || ||||||
Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGT--TCTTTACGTTTCTTCT 21021
Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325
|||||| | || || || || | ||||| || || | | ||| | || ||||| |
Sbjct 21020 TAGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTT 20961
Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385
||||| | ||| | || ||||| || ||||| || || ||| | | ||| | |||
Sbjct 20960 TCAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTA 20901
Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445
|| |||| | | | ||||| | || ||||||||||||||||| |||||||| ||||
Sbjct 20900 ACACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20841
Query 169446 ACGCTCACAACTTCCCACTAGACTTA 169471
| ||||| |||||||| |||||| ||
Sbjct 20840 ATGCTCATAACTTCCCTCTAGACCTA 20815
>seq1192
Length=17806
Score = 158 bits (174), Expect = 1e-33
Identities = 233/328 (71%), Gaps = 4/328 (1%)
Strand=Plus/Plus
Query 169146 ATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACT 169205
||||||||| ||||||||||| |||||||| ||||| ||||| || || ||||| || |
Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390
Query 169206 TCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 169265
|| |||| | | | |||| |||||||||||||| | | | || ||||||
Sbjct 2391 CTGGCCGATTGA---TAAAATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447
Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325
|||||| || || | || || | ||||| || || | ||||| | || ||||| |
Sbjct 2448 TAGCAGCTTTGCC-TATATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506
Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385
||||| | ||| | || ||||| || |||| || || ||| | | ||| || |||
Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566
Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445
| |||| ||| | |||| | || ||||||||| || |||| | |||||| ||||
Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626
Query 169446 ACGCTCACAACTTCCCACTAGACTTAGC 169473
| ||||| |||||||| | |||| ||||
Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564100133998560
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