Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq10156 333 3e-86 seq6213 320 2e-82 seq21559 248 1e-60 seq14731 187 3e-42 seq1192 158 1e-33 >seq10156 Length=9543 Score = 333 bits (368), Expect = 3e-86 Identities = 566/817 (69%), Gaps = 5/817 (1%) Strand=Plus/Plus Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710 ||||| | || |||||||| || || | ||||| || ||| |||| || || | Sbjct 601 CTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAG 660 Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTG 168770 || | ||||| |||||||| ||||||||| | | || ||||| |||||||||||||| | Sbjct 661 GTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCG 720 Query 168771 GTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGAC 168830 |||||| || | | | | ||||| || | || | || ||||||||| | Sbjct 721 GTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTG 780 Query 168831 AGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCAC 168890 |||||||| | | ||| | |||||| |||||||| | |||| |||||||||| Sbjct 781 AGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCAC 840 Query 168891 CAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTG 168950 | | | || || |||| | ||| | | |||||| ||||||| || || ||| Sbjct 841 CTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTA 900 Query 168951 ATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGC 169010 ||||||||||| |||||||| || || |||||||| ||| | ||||||| || ||| Sbjct 901 ATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGC 960 Query 169011 ACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAG--CAGGTATGTTCGGTGGATC 169068 ||||||| |||||||| || || || ||| || |||| | ||| ||| |||| || Sbjct 961 ACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTA--TTCAGTGGCTC 1018 Query 169069 TCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGA 169128 |||| || ||||||||||| | ||||| | | | | || ||||| || || || Sbjct 1019 CTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCACAGA 1078 Query 169129 GGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGT 169188 | |||||| || | | |||| |||||| |||| |||||||| || |||||| | Sbjct 1079 AAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTAT 1138 Query 169189 TGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAG 169248 || || ||||| || || || ||| ||||| | ||||| |||||||||||||| | Sbjct 1139 AGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCG 1198 Query 169249 AAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGG 169308 | | || |||||| ||||| | || || | || | ||| | | || | | Sbjct 1199 TTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTAAG 1257 Query 169309 TATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGT 169368 ||| | |||||||| |||||| | |||||||| ||||| || |||| || || ||| Sbjct 1258 TATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATAG 1317 Query 169369 TAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGA 169428 | | ||| || ||| || |||| ||| | |||| | | ||| |||||||||| Sbjct 1318 TGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGGA 1377 Query 169429 AGTAATGCATGAGCGTAACGCTCACAACTTCCCACTA 169465 || |||||||| | ||| ||||| || ||||| ||| Sbjct 1378 GGTTATGCATGAACATAATGCTCATAATTTCCCTCTA 1414 >seq6213 Length=1415 Score = 320 bits (354), Expect = 2e-82 Identities = 589/862 (68%), Gaps = 41/862 (5%) Strand=Plus/Plus Query 168651 CTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCG 168710 ||||| | || | ||| || || || || ||||| || |||| |||| | || || Sbjct 282 CTCTACTTTACGAAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATAT 341 Query 168711 GTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTG 168770 || | ||||| ||||||| ||||||||||| | ||||| |||||||||||||||| Sbjct 342 GTTTGCACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTG 401 Query 168771 GTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGAC 168830 ||||||| || | | | | ||||| || | || | || ||||||||| | Sbjct 402 GTCCTTATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTG 461 Query 168831 AGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCA 168889 |||||||| ||| | || | ||||||| | |||||| | |||||| |||||||| Sbjct 462 AGTGGGAACTTAGTTTCCAT-CGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCT 520 Query 168890 CCAGT---ATCT------GCAGCATT--TG-------CAGT------------------- 168912 || || |||| || | || || || | Sbjct 521 CCCGTGGCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTG 580 Query 168913 ATTCCTTG-TATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTT 168971 ||| |||| | |||||| | || |||| |||| | ||||||||||| | ||||||| | Sbjct 581 ATTTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGT 639 Query 168972 CTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCT 169031 |||| || |||||||| ||| |||||||||||| ||||||||||| |||||||| || | Sbjct 640 CTGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCAT 699 Query 169032 TCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTT 169091 | || ||| ||| ||||| | | ||||| || || |||||| | |||||||||| Sbjct 700 TTCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTT 759 Query 169092 CACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTT 169151 | ||||| | | | | || || || || || || | |||||| || | |||| Sbjct 760 TCTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 819 Query 169152 ACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTA 169211 | |||||| |||| ||||||| ||||||||| | || || ||||| || || || Sbjct 820 AATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCC 879 Query 169212 GATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAG 169271 |||| ||||| |||| |||||||||||| | | || | || |||||| || ||| Sbjct 880 GATTGATCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAG 939 Query 169272 TGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACT 169331 | || || ||||| | ||||| || ||| | ||||| | || ||||| | |||| Sbjct 940 ATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACC 999 Query 169332 TGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACAT 169391 | ||| || ||||| || || | || || ||| | ||| | ||| || | Sbjct 1000 TAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTT 1059 Query 169392 GGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTC 169451 ||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| |||| Sbjct 1060 GGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 1119 Query 169452 ACAACTTCCCACTAGACTTAGC 169473 | |||||||| |||||| |||| Sbjct 1120 ATAACTTCCCTCTAGACCTAGC 1141 >seq21559 Length=2991 Score = 248 bits (274), Expect = 1e-60 Identities = 498/732 (68%), Gaps = 5/732 (1%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| ||||| |||| | |||||| |||| ||||| ||||| || || ||||| Sbjct 1896 TGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCCCT 1955 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || | | | ||| || ||||| || || ||||| || | || || || Sbjct 1956 ACTTTATTGACCGTAA-ATTTTGTATTTATTGTAGCTTTCATTGCAGCGTCTCCAGTAGA 2014 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| || || || |||||| | || ||||| | || |||||||| || || | Sbjct 2015 TATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATTATTTT 2074 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||| || ||| ||| | || | ||| | || || |||||||| |||||||| Sbjct 2075 TTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGGGAAGC 2134 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 ||| | || ||||| |||||||||||||| || ||||| || | | | | |||| Sbjct 2135 AGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTATACTT 2194 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858 | | || | || || |||||| | |||||||| | | ||| || ||||| Sbjct 2195 TTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGTAT 2254 Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918 | | |||||||| | |||| ||| |||| || || | || || | | | ||| | Sbjct 2255 GCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTCTT 2314 Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT-TTCTGGAA 168977 | |||||| ||||||| || || | ||||||||||||| ||| ||| |||| | | Sbjct 2315 AATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTCT-GTA 2373 Query 168978 CATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATA 169037 | |||||||| ||| | |||||||||| || | |||| |||||||| || || || | Sbjct 2374 CTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTTCACA 2433 Query 169038 TGGCAGGAGTAGCAGGTATGTTCGGTGGAT-CTCTATTCTCCGCAATGCATGGTTCACTT 169096 || || ||||| || | ||| | | | || |||| | |||||| ||| | Sbjct 2434 TGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATAATTCCTTG 2493 Query 169097 GTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAG 169156 | ||| ||| | | || || || || || || | |||||| || | | |||| Sbjct 2494 GGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTACCGA 2553 Query 169157 TTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTA 169216 ||||||||||| |||||||| ||||||||||| || || ||||| || || || |||| Sbjct 2554 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 2613 Query 169217 ATCTTCCAGTAT 169228 ||||| || ||| Sbjct 2614 ATCTTTCAATAT 2625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/257 (67%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 169226 TATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTA 169285 ||||| |||||||||||||| | | | || |||||| ||| | | | || || Sbjct 2671 TATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATA 2730 Query 169286 TGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAAC 169345 || | ||||| || || | ||||| | || || || ||||| | |||| | ||| Sbjct 2731 GGTATCTGGTTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAAC 2790 Query 169346 TTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGT---- 169401 || || |||| || || ||| | | ||| || ||| || |||| ||| | Sbjct 2791 TTCAATCAATATGTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATT 2850 Query 169402 -AC----TTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAAC 169456 || ||||| | | ||| |||||||||| || |||||||| ||||| ||||| ||| Sbjct 2851 AACTGGGTTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAAC 2910 Query 169457 TTCCCACTAGACTTAGC 169473 ||||| |||| | |||| Sbjct 2911 TTCCCTCTAGGCCTAGC 2927 >seq14731 Length=28268 Score = 187 bits (206), Expect = 3e-42 Identities = 238/326 (73%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| ||||||||||| |||||||| ||||||||||| | || ||||| || || Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCAC--TTCTTCC 169265 || ||| ||||| || |||| ||| |||||||||| | |||| || |||||| Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGT--TCTTTACGTTTCTTCT 21021 Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325 |||||| | || || || || | ||||| || || | | ||| | || ||||| | Sbjct 21020 TAGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTT 20961 Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385 ||||| | ||| | || ||||| || ||||| || || ||| | | ||| | ||| Sbjct 20960 TCAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTA 20901 Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445 || |||| | | | ||||| | || ||||||||||||||||| |||||||| |||| Sbjct 20900 ACACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20841 Query 169446 ACGCTCACAACTTCCCACTAGACTTA 169471 | ||||| |||||||| |||||| || Sbjct 20840 ATGCTCATAACTTCCCTCTAGACCTA 20815 >seq1192 Length=17806 Score = 158 bits (174), Expect = 1e-33 Identities = 233/328 (71%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 169146 ATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACT 169205 ||||||||| ||||||||||| |||||||| ||||| ||||| || || ||||| || | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 169206 TCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 169265 || |||| | | | |||| |||||||||||||| | | | || |||||| Sbjct 2391 CTGGCCGATTGA---TAAAATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325 |||||| || || | || || | ||||| || || | ||||| | || ||||| | Sbjct 2448 TAGCAGCTTTGCC-TATATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385 ||||| | ||| | || ||||| || |||| || || ||| | | ||| || ||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566 Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445 | |||| ||| | |||| | || ||||||||| || |||| | |||||| |||| Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626 Query 169446 ACGCTCACAACTTCCCACTAGACTTAGC 169473 | ||||| |||||||| | |||| |||| Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564100133998560