Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 273 3e-68
seq6213 250 4e-61
seq21559 208 1e-48
seq14731 158 2e-33
seq1192 118 2e-21
>seq10156
Length=9543
Score = 273 bits (302), Expect = 3e-68
Identities = 553/817 (68%), Gaps = 3/817 (0%)
Strand=Plus/Plus
Query 215449 TGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGC 215508
||| ||| || | || || ||||| || || | |||||| || | | || ||| ||
Sbjct 596 TGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGC 655
Query 215509 AATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 215568
|| || || ||||| ||||| || ||||||||| || | |||| |||||| | || ||
Sbjct 656 TATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAA 715
Query 215569 TGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGG 215628
||| || |||| | || || | | ||||| | ||||| | || ||| ||
Sbjct 716 TGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGG 775
Query 215629 AAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTC 215688
| ||||||||||| || ||| | |||||| |||||||| | |||| || ||
Sbjct 776 TCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTC 835
Query 215689 CGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTT 215748
|||||| | | ||||| |||| | ||| | | || ||| | ||||| || ||
Sbjct 836 AGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 895
Query 215749 CTCTGATGCTATGCCACTTGGAA-TCTCTGGAACATTCAACTACATGTTTGTTTTCCAGG 215807
||| ||| |||||| | |||| |||| || || ||||||| ||| || | ||||| |
Sbjct 896 TTCTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATG 954
Query 215808 CTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTG 215867
|| |||||||||| || ||||||||||| |||||||| || || | | || ||| |||
Sbjct 955 CTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTG 1014
Query 215868 GTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAA 215927
| || || || ||| ||||| ||||| | || || | | | | || ||||| || |
Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074
Query 215928 CTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACA 215987
| || | |||||| || | | |||| ||||| ||||||| ||||| || || |
Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134
Query 215988 TCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACT 216047
| ||||||| || ||||| ||||| | | ||||| | ||| || |||||||||||
Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194
Query 216048 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAA 216107
| | | | || |||||| | ||| | | ||||| | |||| ||| | | ||
Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTC-ATGGCTT 1253
Query 216108 TGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAG 216167
| || | || ||||| |||||||| ||||| ||||||||||| || | ||| || |
Sbjct 1254 TAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTG 1313
Query 216168 ACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTA 216227
| ||| | ||| |||||||| || || |||| | | ||||||
Sbjct 1314 ATAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTA 1373
Query 216228 TGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 216264
|||| || ||||| || | ||| ||||| || |||||
Sbjct 1374 TGGAGGTTATGCATGAACATAATGCTCATAATTTCCC 1410
>seq6213
Length=1415
Score = 250 bits (276), Expect = 4e-61
Identities = 580/874 (66%), Gaps = 43/874 (5%)
Strand=Plus/Plus
Query 215448 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG 215507
|||| ||| || | || | || || || || |||||||| || | |||| ||| | |
Sbjct 276 CTGGATCTCTACTTTACGAAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGG 335
Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 215567
| || | || ||||| |||| || |||||||||||| ||||| |||||| | || |
Sbjct 336 CTATATGTTTGCACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATA 395
Query 215568 ATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCG 215627
||||||| |||| | || || | | ||||| | ||||| | || ||| |
Sbjct 396 ATGGTGGTCCTTATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGG 455
Query 215628 GAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACT 215687
| | ||||||||||| || | ||||||| | |||||| | |||||| || |
Sbjct 456 GTCGTGAGTGGGAACTTAGTTTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATT 515
Query 215688 CCGCACCTGT---ATCT------GCTGCCTT--TG-------CAGT-------------- 215715
| || || || |||| |||| || || || |
Sbjct 516 CAGCTCCCGTGGCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTT 575
Query 215716 -----ATTCCTTG-TGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769
||| |||| | || ||| |||| |||| |||| | ||||| ||||| | ||
Sbjct 576 TTTTGATTTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGG 634
Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829
||| ||||| || ||||||| ||| | || ||||| | |||||||||||| || |||||
Sbjct 635 AATGTCTGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCA 694
Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCA 215889
|||||| ||||||||||| || ||| | || ||||| || || | ||| || |||||
Sbjct 695 CCCATTTCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCA 754
Query 215890 CGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTA 215949
|||| | || || | | | | || || || || || || | |||||| || |
Sbjct 755 TGGTTTCTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGA 814
Query 215950 CGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTT 216009
||||| ||||| ||||||| |||| || || || ||||||| || ||||| ||
Sbjct 815 AGGTTAATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTT 874
Query 216010 TGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 216069
||| || | ||||| ||| | |||||||||| | | || | || |||||| |
Sbjct 875 TGGCCGATTGATCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTT 934
Query 216070 TGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTT 216129
||| | ||||| || ||||| ||| || | | ||| | |||||||| |
Sbjct 935 AACAGATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTC 994
Query 216130 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGT--AGACGCATCTGGTAAAGTTATT 216187
|||||| ||| ||||||||||| | |||| || | | ||| ||| || |||
Sbjct 995 CAACCTAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCA--AGGTTGCGTAATT 1052
Query 216188 CCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGT 216247
|||||||| || || ||||| | || |||||||||||||| ||||| || |||
Sbjct 1053 AACACTTGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGT 1112
Query 216248 AACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281
|| ||||| |||||||| ||||| | |||||||
Sbjct 1113 AATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 1146
>seq21559
Length=2991
Score = 208 bits (230), Expect = 1e-48
Identities = 492/739 (67%), Gaps = 3/739 (0%)
Strand=Plus/Plus
Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353
|||||| ||||| | || | ||||||||||| | || |||| ||||||||||| |
Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946
Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGT-TTCATCGTAGCATTCATCGCTGCACC 215412
|| || ||| | | | | || |||| || || ||||| ||||| || || |
Sbjct 1947 ATAATCCCTACTTTATTGACCG-TAAATTTTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005
Query 215413 TCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472
||| || ||||| || || || || || || ||| ||| || | || || |||||
Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065
Query 215473 CATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT 215532
|| || | | ||| || | | || ||| | || | || || || || ||||| ||
Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125
Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592
|||||||||||| | |||| || ||| | || ||||| || |||| | || || |
Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185
Query 215593 CTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652
| |||| | ||||| | || ||| || | ||||||||||| || |||
Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245
Query 215653 ATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGC 215712
| |||||| | |||||||| | |||| || | || ||||| | ||||| | |
Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305
Query 215713 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAAT 215772
| ||| | | || ||| | ||||| || || | ||||| |||||| | | |||
Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365
Query 215773 CTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCC 215832
|| | || ||||||| ||| || | ||||| ||| || | |||| || ||||||||
Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425
Query 215833 ATTCCACATGTTAGGTGTGGCTGGTGTCTTC-GGTGGTTCATTGTTCTCTGCAATGCACG 215891
||| |||||||||| || ||||| || ||| | | | | || || || |||||
Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485
Query 215892 GTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACG 215951
||| | | || ||| | | || || || || || || | |||||| || | |
Sbjct 2486 ATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAG 2545
Query 215952 GTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTG 216011
|||| ||||| |||||||| ||||| || || || |||||||| || ||||| ||||
Sbjct 2546 ATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 2605
Query 216012 GTCGCCTCATCTTCCAATA 216030
| || | ||||| |||||
Sbjct 2606 GCCGATTGATCTTTCAATA 2624
>seq14731
Length=28268
Score = 158 bits (174), Expect = 2e-33
Identities = 236/333 (71%), Gaps = 4/333 (1%)
Strand=Plus/Minus
Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010
||||||| ||||| |||||||| ||||| || || || |||| ||| || ||||| |||
Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079
Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCAC--TTCTTCC 216068
|| | | ||||| ||||| | | |||||||||| | |||| || ||||||
Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGT--TCTTTACGTTTCTTCT 21021
Query 216069 TTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGT 216128
| ||||| | ||||| || |||| ||| || || | | | | |||||||| |
Sbjct 21020 TAGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTT 20961
Query 216129 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTC 216188
||||||| ||| | ||||||||||| || ||||| || || ||| || |||
Sbjct 20960 TCAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTA 20901
Query 216189 CTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTA 216248
|||||||| | || ||||| | || |||||||||||||| ||||| || ||||
Sbjct 20900 ACACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20841
Query 216249 ACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281
| ||||| |||||||| ||||| | ||||||
Sbjct 20840 ATGCTCATAACTTCCCTCTAGACCTAACTGCTG 20808
>seq1192
Length=17806
Score = 118 bits (130), Expect = 2e-21
Identities = 226/331 (68%), Gaps = 4/331 (1%)
Strand=Plus/Plus
Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010
||||||| ||||| |||||||| ||||| || ||||| |||||||| || ||||| | |
Sbjct 2333 GGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTCT 2392
Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070
|| || | || |||| | |||||||||||| | | | || |||||| |
Sbjct 2393 GGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTA 2449
Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130
||||| || ||| | || |||| ||| || | | ||| | |||||||| |||
Sbjct 2450 GCAGCTTTGCCTAT-ATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTTTC 2508
Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190
||||| ||| | ||||||||||| | ||||| || || ||| | |||
Sbjct 2509 AACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTAAC 2568
Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250
| |||||| || || |||| | || |||||| || |||| | ||| || |||||
Sbjct 2569 ATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTAAT 2628
Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTG 216281
||||| |||||||| |||| | |||| ||
Sbjct 2629 GCTCATAACTTCCCTCCAGACCTAGCTGTTG 2659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744630853572560
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