Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq10156 273 3e-68 seq6213 250 4e-61 seq21559 208 1e-48 seq14731 158 2e-33 seq1192 118 2e-21 >seq10156 Length=9543 Score = 273 bits (302), Expect = 3e-68 Identities = 553/817 (68%), Gaps = 3/817 (0%) Strand=Plus/Plus Query 215449 TGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGC 215508 ||| ||| || | || || ||||| || || | |||||| || | | || ||| || Sbjct 596 TGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGC 655 Query 215509 AATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 215568 || || || ||||| ||||| || ||||||||| || | |||| |||||| | || || Sbjct 656 TATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAA 715 Query 215569 TGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGG 215628 ||| || |||| | || || | | ||||| | ||||| | || ||| || Sbjct 716 TGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGG 775 Query 215629 AAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTC 215688 | ||||||||||| || ||| | |||||| |||||||| | |||| || || Sbjct 776 TCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTC 835 Query 215689 CGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTT 215748 |||||| | | ||||| |||| | ||| | | || ||| | ||||| || || Sbjct 836 AGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 895 Query 215749 CTCTGATGCTATGCCACTTGGAA-TCTCTGGAACATTCAACTACATGTTTGTTTTCCAGG 215807 ||| ||| |||||| | |||| |||| || || ||||||| ||| || | ||||| | Sbjct 896 TTCTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATG 954 Query 215808 CTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTG 215867 || |||||||||| || ||||||||||| |||||||| || || | | || ||| ||| Sbjct 955 CTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTG 1014 Query 215868 GTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAA 215927 | || || || ||| ||||| ||||| | || || | | | | || ||||| || | Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074 Query 215928 CTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACA 215987 | || | |||||| || | | |||| ||||| ||||||| ||||| || || | Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134 Query 215988 TCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACT 216047 | ||||||| || ||||| ||||| | | ||||| | ||| || ||||||||||| Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194 Query 216048 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAA 216107 | | | | || |||||| | ||| | | ||||| | |||| ||| | | || Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTC-ATGGCTT 1253 Query 216108 TGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAG 216167 | || | || ||||| |||||||| ||||| ||||||||||| || | ||| || | Sbjct 1254 TAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTG 1313 Query 216168 ACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTA 216227 | ||| | ||| |||||||| || || |||| | | |||||| Sbjct 1314 ATAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTA 1373 Query 216228 TGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 216264 |||| || ||||| || | ||| ||||| || ||||| Sbjct 1374 TGGAGGTTATGCATGAACATAATGCTCATAATTTCCC 1410 >seq6213 Length=1415 Score = 250 bits (276), Expect = 4e-61 Identities = 580/874 (66%), Gaps = 43/874 (5%) Strand=Plus/Plus Query 215448 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACG 215507 |||| ||| || | || | || || || || |||||||| || | |||| ||| | | Sbjct 276 CTGGATCTCTACTTTACGAAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGG 335 Query 215508 CAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 215567 | || | || ||||| |||| || |||||||||||| ||||| |||||| | || | Sbjct 336 CTATATGTTTGCACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATA 395 Query 215568 ATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCG 215627 ||||||| |||| | || || | | ||||| | ||||| | || ||| | Sbjct 396 ATGGTGGTCCTTATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGG 455 Query 215628 GAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACT 215687 | | ||||||||||| || | ||||||| | |||||| | |||||| || | Sbjct 456 GTCGTGAGTGGGAACTTAGTTTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATT 515 Query 215688 CCGCACCTGT---ATCT------GCTGCCTT--TG-------CAGT-------------- 215715 | || || || |||| |||| || || || | Sbjct 516 CAGCTCCCGTGGCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTT 575 Query 215716 -----ATTCCTTG-TGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769 ||| |||| | || ||| |||| |||| |||| | ||||| ||||| | || Sbjct 576 TTTTGATTTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGG 634 Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829 ||| ||||| || ||||||| ||| | || ||||| | |||||||||||| || ||||| Sbjct 635 AATGTCTGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCA 694 Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCA 215889 |||||| ||||||||||| || ||| | || ||||| || || | ||| || ||||| Sbjct 695 CCCATTTCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCA 754 Query 215890 CGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTA 215949 |||| | || || | | | | || || || || || || | |||||| || | Sbjct 755 TGGTTTCTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGA 814 Query 215950 CGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTT 216009 ||||| ||||| ||||||| |||| || || || ||||||| || ||||| || Sbjct 815 AGGTTAATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTT 874 Query 216010 TGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 216069 ||| || | ||||| ||| | |||||||||| | | || | || |||||| | Sbjct 875 TGGCCGATTGATCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTT 934 Query 216070 TGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTT 216129 ||| | ||||| || ||||| ||| || | | ||| | |||||||| | Sbjct 935 AACAGATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTC 994 Query 216130 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGT--AGACGCATCTGGTAAAGTTATT 216187 |||||| ||| ||||||||||| | |||| || | | ||| ||| || ||| Sbjct 995 CAACCTAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCA--AGGTTGCGTAATT 1052 Query 216188 CCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGT 216247 |||||||| || || ||||| | || |||||||||||||| ||||| || ||| Sbjct 1053 AACACTTGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGT 1112 Query 216248 AACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 || ||||| |||||||| ||||| | ||||||| Sbjct 1113 AATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 1146 >seq21559 Length=2991 Score = 208 bits (230), Expect = 1e-48 Identities = 492/739 (67%), Gaps = 3/739 (0%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||| ||||| | || | ||||||||||| | || |||| ||||||||||| | Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGT-TTCATCGTAGCATTCATCGCTGCACC 215412 || || ||| | | | | || |||| || || ||||| ||||| || || | Sbjct 1947 ATAATCCCTACTTTATTGACCG-TAAATTTTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005 Query 215413 TCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472 ||| || ||||| || || || || || || ||| ||| || | || || ||||| Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065 Query 215473 CATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT 215532 || || | | ||| || | | || ||| | || | || || || || ||||| || Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125 Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592 |||||||||||| | |||| || ||| | || ||||| || |||| | || || | Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185 Query 215593 CTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652 | |||| | ||||| | || ||| || | ||||||||||| || ||| Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245 Query 215653 ATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGC 215712 | |||||| | |||||||| | |||| || | || ||||| | ||||| | | Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305 Query 215713 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAAT 215772 | ||| | | || ||| | ||||| || || | ||||| |||||| | | ||| Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365 Query 215773 CTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCC 215832 || | || ||||||| ||| || | ||||| ||| || | |||| || |||||||| Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425 Query 215833 ATTCCACATGTTAGGTGTGGCTGGTGTCTTC-GGTGGTTCATTGTTCTCTGCAATGCACG 215891 ||| |||||||||| || ||||| || ||| | | | | || || || ||||| Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485 Query 215892 GTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACG 215951 ||| | | || ||| | | || || || || || || | |||||| || | | Sbjct 2486 ATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAG 2545 Query 215952 GTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTG 216011 |||| ||||| |||||||| ||||| || || || |||||||| || ||||| |||| Sbjct 2546 ATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 2605 Query 216012 GTCGCCTCATCTTCCAATA 216030 | || | ||||| ||||| Sbjct 2606 GCCGATTGATCTTTCAATA 2624 >seq14731 Length=28268 Score = 158 bits (174), Expect = 2e-33 Identities = 236/333 (71%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||||| |||||||| ||||| || || || |||| ||| || ||||| ||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCAC--TTCTTCC 216068 || | | ||||| ||||| | | |||||||||| | |||| || |||||| Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGT--TCTTTACGTTTCTTCT 21021 Query 216069 TTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGT 216128 | ||||| | ||||| || |||| ||| || || | | | | |||||||| | Sbjct 21020 TAGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTT 20961 Query 216129 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTC 216188 ||||||| ||| | ||||||||||| || ||||| || || ||| || ||| Sbjct 20960 TCAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTA 20901 Query 216189 CTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTA 216248 |||||||| | || ||||| | || |||||||||||||| ||||| || |||| Sbjct 20900 ACACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20841 Query 216249 ACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 | ||||| |||||||| ||||| | |||||| Sbjct 20840 ATGCTCATAACTTCCCTCTAGACCTAACTGCTG 20808 >seq1192 Length=17806 Score = 118 bits (130), Expect = 2e-21 Identities = 226/331 (68%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||||| |||||||| ||||| || ||||| |||||||| || ||||| | | Sbjct 2333 GGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTCT 2392 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 || || | || |||| | |||||||||||| | | | || |||||| | Sbjct 2393 GGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTA 2449 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 ||||| || ||| | || |||| ||| || | | ||| | |||||||| ||| Sbjct 2450 GCAGCTTTGCCTAT-ATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTTTC 2508 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190 ||||| ||| | ||||||||||| | ||||| || || ||| | ||| Sbjct 2509 AACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTAAC 2568 Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 | |||||| || || |||| | || |||||| || |||| | ||| || ||||| Sbjct 2569 ATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTAAT 2628 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 ||||| |||||||| |||| | |||| || Sbjct 2629 GCTCATAACTTCCCTCCAGACCTAGCTGTTG 2659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744630853572560