Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq10156 284 1e-71 seq6213 282 5e-71 seq21559 215 6e-51 seq14731 167 3e-36 seq1192 87.8 2e-12 >seq10156 Length=9543 Score = 284 bits (314), Expect = 1e-71 Identities = 551/809 (68%), Gaps = 7/809 (1%) Strand=Plus/Plus Query 169858 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCAC 169917 || || ||||| || || | |||||| || ||| |||| || || ||| | ||| Sbjct 609 TACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAGGTTTGCAC 668 Query 169918 TTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 || || || || ||||||||| || || | ||||| ||||| ||||| || ||||||| | Sbjct 669 TTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCGGTCCTTCT 728 Query 169978 CAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 170037 | || || | | ||||| | | || | || ||||||||| | |||||||| Sbjct 729 GAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 788 Query 170038 CTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCA 170097 || | | || | ||||||| |||||||| | | |||||||| || || | || Sbjct 789 CTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCACCTATTGCA 848 Query 170098 GCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATG 170157 || || | |||| |||||| | || || | ||||| ||| || || | || ||| Sbjct 849 GCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATG 908 Query 170158 CCTCTAGGTAT-CTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACAT 170216 ||| |||| || ||| ||||| || ||||| ||| | ||||||| || |||||||||| Sbjct 909 CCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATGCTTAGCACAACAT 967 Query 170217 TCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTC 170276 |||||||||||||| || ||| || || | | | ||| | || | | || Sbjct 968 CCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGCTCCTTATTTAG 1027 Query 170277 AGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTC 170336 || ||||| ||||| | ||||| | | | | || ||||| || ||||| || || || Sbjct 1028 TGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCACAGAAAATGAATC 1087 Query 170337 ACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACA 170396 || | | ||| |||||| |||| |||||||| || || ||| | || || || Sbjct 1088 TGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTATAGCTGCTCA 1147 Query 170397 TGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCA 170456 ||| || ||||| | | ||||| | ||||||||| || ||||| |||| | | || Sbjct 1148 TGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCGTTCTTTACA 1207 Query 170457 CTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGT--TAACTTCAATGGGTATTTGC 170514 |||||| | || || | |||||| | | || |||| | ||| || ||||| || Sbjct 1208 TTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTCATGGCTTTAA---GTATTAGC 1264 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 |||||||| || ||||| || ||||| |||||||| || | | || ||| | ||| Sbjct 1265 ACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATAGTGAAGGT 1324 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 || || || ||||| || || |||| | | ||| | |||||||| || ||| Sbjct 1325 CGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGGAGGTTATG 1384 Query 170635 CATGAGCGTAATGCACACAACTTCCCACT 170663 ||||| | |||||| || || ||||| || Sbjct 1385 CATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 282 bits (312), Expect = 5e-71 Identities = 566/843 (67%), Gaps = 41/843 (5%) Strand=Plus/Plus Query 169864 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTAT 169923 || || || || |||||||| || |||| |||| | || || || | ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 169924 CCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTA 169983 || || |||||||||||| | | ||||| ||||| ||||| |||||||||||| | | Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 169984 GTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 170043 || | | ||||| | | || | || ||||||||| | |||||||||| Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 170044 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGC-AGC 170102 | || | |||||||||||||||| | ||| |||||||| ||||| ||| || | | Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 170103 ATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCT---------------- 170146 ||| ||||| ||||| || || || |||| ||| | |||| | Sbjct 536 ATT-GCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCTTGATCTAC 594 Query 170147 ---------CAG------------ACGGAATGCCTCTAGGTATCTCAGGTACATTTAACT 170185 ||| | || |||| | |||| || || ||||| || |||| Sbjct 595 CCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACT 654 Query 170186 TCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGG 170245 | ||| |||||||||||| ||||||||||| |||||||||||||| || ||| ||| | Sbjct 655 TTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCG 714 Query 170246 TTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTT 170305 | ||| | | ||||| || | || ||| | ||||| |||| | ||||| | | Sbjct 715 TAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTTTA 774 Query 170306 CTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAG 170365 | | || || || || ||||| || || || || | || || |||||| ||| Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834 Query 170366 AAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAAT 170425 | ||||||| || || ||| | || || ||||| || ||||| || | ||||| || Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894 Query 170426 ATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT-CCCTGTAGTA 170484 ||| ||| || ||||| |||| || | || ||||| ||| | ||| ||||| || Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTT-CTTAACAGATTGGCCTGTGATA 953 Query 170485 TGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAAC 170544 || || ||||| || || | |||||| |||| ||||| | ||||| || || ||| Sbjct 954 TGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAAC 1013 Query 170545 TTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTT 170604 ||||| | | | || ||| | ||| ||| || || ||||| || || || Sbjct 1014 TTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATATTATT 1073 Query 170605 AACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTT 170664 ||| | || ||||| ||||||||||| |||||||| |||||||| || |||||||| || Sbjct 1074 AACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 1133 Query 170665 GAC 170667 ||| Sbjct 1134 GAC 1136 >seq21559 Length=2991 Score = 215 bits (238), Expect = 6e-51 Identities = 490/733 (67%), Gaps = 7/733 (1%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| |||| |||| ||| | ||| |||| ||||| ||||| ||||| ||||| Sbjct 1896 TGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCCCT 1955 Query 169759 TGTCTATTAGCAGCAGCAACCTGC-TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGA 169817 | |||| | | | | || ||||| || |||||||| ||||| | || || || Sbjct 1956 ACTTTATTGACCGTAA-ATTTTGTATTTATTGTAGCTTTCATTGCAGCGTCTCCAGTAGA 2014 Query 169818 CATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTC 169877 || ||||| || |||||| | || || | | || || ||||| || || | Sbjct 2015 TATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATTATTTT 2074 Query 169878 TGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGC 169937 | ||| || ||| ||| | || | ||| | || || || || || |||||||| Sbjct 2075 TTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGGGAAGC 2134 Query 169938 AGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTT 169997 |||| || | ||||| ||||| ||||| || || |||||| | || || | | |||| Sbjct 2135 AGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTATACTT 2194 Query 169998 CCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTAT 170057 | | || | || || |||||| | |||||||||| | | || | ||||| Sbjct 2195 TTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGTAT 2254 Query 170058 GCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTT 170117 ||| |||||||| | | |||||| | ||||| || |||| || || | ||||| Sbjct 2255 GCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTCTT 2314 Query 170118 AGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTAC 170177 | | || || | ||||| ||| || | || || |||||| ||| |||| |||| Sbjct 2315 AATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTCTGTAC 2374 Query 170178 ATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATAT 170237 || ||||| ||| | |||||||||| || | |||| |||||||||||||| || || Sbjct 2375 TTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTTCACAT 2434 Query 170238 GGCAGGGGTTGCTGGTATGTTCGGAGGAGCAC---TCTTCTCAGCAATGCACGGTTCACT 170294 | || || ||||| | ||| || ||| | | || | ||||| ||| | Sbjct 2435 GTTAGACGTAGCTGGAGTATTC--AGCAGCTCCTTTATTTAGTGTTATGCATAATTCCTT 2492 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 | ||| ||| | | || || || || ||||| ||||| || || | | ||| Sbjct 2493 GGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTACCG 2552 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 |||||| ||||| |||||||| || || ||||| || || ||||| || ||||| || | Sbjct 2553 ATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATT 2612 Query 170415 TATCTTCCAATAT 170427 ||||| |||||| Sbjct 2613 GATCTTTCAATAT 2625 >seq14731 Length=28268 Score = 167 bits (184), Expect = 3e-36 Identities = 240/336 (71%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||| |||||| ||||| |||||||| || || ||||| | || ||||| || ||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCAC--TTCTTCC 170464 || | | ||||| ||||||| ||| | ||||| |||| |||| || |||||| Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGT--TCTTTACGTTTCTTCT 21021 Query 170465 TTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCAT 170524 | || | | |||||| || | || ||||| || | | | |||| |||| ||||| | Sbjct 21020 TAGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTT 20961 Query 170525 TTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTC 170584 | ||||| || | || |||||||| || || | || ||| | ||| ||| || Sbjct 20960 TCAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTA 20901 Query 170585 CTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTA 170644 || ||||| | || ||||| | || ||||| ||||||||||| |||||||| |||| Sbjct 20900 ACACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20841 Query 170645 ATGCACACAACTTCCCACTTGACTTGGCAACTGCTG 170680 |||| || |||||||| || ||| | |||||||| Sbjct 20840 ATGCTCATAACTTCCCTCTAGACCT---AACTGCTG 20808 >seq1192 Length=17806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 169962 TAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACAT 170021 ||| |||||||||||| | || ||| | ||||| | | || || || ||||| Sbjct 1996 TAATGGTGGTCCTTATGAGCTAACTATTCTACACTTTTTACTTGGTATAACTTGTTACAT 2055 Query 170022 GGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATA 170081 |||| | |||||||||| | |||| | |||||||| |||||||| ||| ||||| Sbjct 2056 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATA 2115 Query 170082 TTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGA 170139 ||| ||||| || |||| || ||||| ||||| | || || ||||||| ||| Sbjct 2116 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGA 2173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582495398816800