Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq10156 370 1e-97 seq6213 329 4e-85 seq21559 288 1e-72 seq14731 179 4e-40 seq1192 136 5e-27 seq23521 95.1 1e-14 >seq10156 Length=9543 Score = 370 bits (410), Expect = 1e-97 Identities = 601/859 (70%), Gaps = 7/859 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || ||| |||| ||||| || |||||||||| | ||||||| Sbjct 1410 GGGAAATTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCCGATTAATA 1351 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || || | | || || ||||| || | | ||||||||||| Sbjct 1350 ATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAAGTTG 1291 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAA-ACCAAATGCCAAC 84163 ||||| || || || || ||||| ||||||| || | ||| || ||||||| || Sbjct 1290 AATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGC--CATGACCAAATACCTCT 1233 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||| || | ||| || || | ||||||| |||||||| |||||| | Sbjct 1232 TACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATCG 1173 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 ||||| | | || || || || |||||||| | |||||| |||||||| || |||| Sbjct 1172 AAAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCTCTTA 1113 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||||| |||| | | || || |||||||||| ||||||| || | | | | Sbjct 1112 ACCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAACTAAA 1053 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 ||| || | ||||||||||| ||| |||| | |||| |||||| | | || || Sbjct 1052 AGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGAATACTTAATCTACGCC 993 Query 84404 CAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTT 84463 ||||||||||| || |||||||||||||| || | || ||||| | || ||| |||| Sbjct 992 GAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAAAGTT 933 Query 84464 GAACGTTCCTGAGA-TACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGAT 84522 ||| || || |||| | || | ||||| |||| ||| || ||||| || | || | Sbjct 932 GAAAGTACC-GAGAATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGGT 874 Query 84523 ACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATG 84582 | | | ||| ||||| || ||||||| || || || || |||| | ||||| | Sbjct 873 AGATTAAGAAACCAGCAATAGCAGCTGCAATAGGTGCTGAATATGCAATAATAATCCAAG 814 Query 84583 GACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAA 84642 | ||||||| | || | ||||||||| ||||||||||||||| | | |||||| Sbjct 813 GGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAA 754 Query 84643 TCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATAC 84702 | ||||| | |||| || | | |||| || |||||||||| |||||| || ||| Sbjct 753 GTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAATAG 694 Query 84703 TTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGG 84762 || ||||||||| || || || || || | ||| ||||| ||| | ||| | || Sbjct 693 ATGTTGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCCCCAGAAGTAAGAATAATGG 634 Query 84763 CACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGT 84822 ||||| |||| || ||||||||||| | ||||| ||| | | ||||| ||| | | Sbjct 633 CACCAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAAGTTCACGAATATCAT 574 Query 84823 CAATATCAACTG--GGGGT 84839 |||||| |||| ||||| Sbjct 573 TAATATCTACTGAAGGGGT 555 >seq6213 Length=1415 Score = 329 bits (364), Expect = 4e-85 Identities = 580/854 (68%), Gaps = 37/854 (4%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| || || |||| Sbjct 1129 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCCCGGTTAATA 1070 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || || | || | ||| ||||| || | | | | ||||||||| Sbjct 1069 ATATCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTACAGTTTTATTGAAGTTG 1010 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || || || || | ||||| ||||||| ||| | || | |||||||| | | | Sbjct 1009 AACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACGTGAACCAAATACATATC 950 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||| | | ||||| || || | | ||||| |||||||| | |||| Sbjct 949 ACAGGCCAATCTGTTAAGAAGAAATGTAAACAACGAGGGTTGTTGAAACTATCATATGAA 890 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| | |||||||||| |||| || |||| | Sbjct 889 AAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTATAATTTTCTTCCTCTTAA 830 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||| | || || |||||||||| ||||| | || | | | || Sbjct 829 CCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTTATCAAACTAAAA 770 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | |||||||||| || |||||| | || |||||||| | ||| || || Sbjct 769 GTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGAATACTCTAGCTACGCCT 710 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || | ||||| || | ||| ||||| Sbjct 709 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGAATACGATCATAAAGTTG 650 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGA------------------------- 84499 || || || || || || | |||| |||||| | Sbjct 649 AAAGTACCAGACATTCCTAAAAGCATACCATCAAAAAAGTTTCCTGCCCGATTGGGTAGA 590 Query 84500 ---------GAAAGAACCTTGC---CCGAAAGGATACACAAGGAATACAGCAGATGCCGC 84547 ||| || ||| | |||| || || || | ||| |||||| | Sbjct 589 TCAAGAAATCAAAAAAGCTTCCTAGCCGATTGGGTAGACCAAGAAAACAGCAATAATAGA 530 Query 84548 TGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAG 84607 ||| || ||||| || || |||||| | ||| ||||||||||| || | | ||| Sbjct 529 TGCCACGGGAGCTGAATATGCAACAGCAACCCAAGGACGCATACCTCGATGGAAACTAAG 470 Query 84608 TTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTG 84667 |||||| ||||||||||||||| | | |||||| | ||||| | |||| || | Sbjct 469 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTGTACAACAATGAGCTC 410 Query 84668 ATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAA 84727 |||||| ||||||||||||| |||||| || | | |||||||||||| || || | || Sbjct 409 ATAAGGACCACCATTATATAACCATTCATCAACATATGCTGCTTCCCATATTGGGTGAAA 350 Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 || | || ||||| |||| | |||| | |||||||||||| || || ||| |||| Sbjct 349 GTGCAAACATATAGCCGTAGAAGTAGGAATAATGGCACCAGAAATAATATTATTTTCGTA 290 Query 84788 CATGAGAGAACCAG 84801 | ||||| |||| Sbjct 289 AAGTAGAGATCCAG 276 >seq21559 Length=2991 Score = 288 bits (318), Expect = 1e-72 Identities = 512/743 (69%), Gaps = 7/743 (1%) Strand=Plus/Minus Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 ||| || ||||| | || || || || || |||||||| ||||||||||||||||| || Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 ||||||||||| |||| | | || || | |||||||| ||||| | || | Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATA---GAGCTCCACCGAATACACC 84394 | |||||| | | ||| |||||| || |||| ||||| | |||||| || Sbjct 2505 ACTAGAAGTTCCCAAGGAATTATGCATAACACTAAATAAAGGAGCTGCT--GAATACTCC 2448 Query 84395 AGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAG 84454 ||| || | ||||||||||| || ||||||||||||| | | || ||||| | || Sbjct 2447 AGCTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGAAT 2388 Query 84455 CATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCC 84514 ||| ||||||| || | |||| | | ||||| |||||| | || ||||| || Sbjct 2387 CATAAAGTTGAAAGTACAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGACC 2328 Query 84515 GAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACA 84574 | || || | | ||| | || || || |||||||| ||||| | || |||| | Sbjct 2327 AATTGGGTAGATTAAGAAAATAGTAGTAGCAGCTGCAACAGGAGCTGGATATGCAATAGT 2268 Query 84575 GATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA 84634 ||||| || |||||||| |||| | ||||||||| |||| |||||| || | Sbjct 2267 AATCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAAGC 2208 Query 84635 TGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTC 84694 | |||||| || |||| | |||| || | |||||| || |||||||||| ||| || Sbjct 2207 TACACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAGTC 2148 Query 84695 GTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGG 84754 || ||| |||||||||||| || || || ||||| | ||| |||| | ||| | Sbjct 2147 ATCAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATATG 2088 Query 84755 AACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACG 84814 || | |||| | |||| || ||||||||||| | ||||| ||| | || ||| | Sbjct 2087 AATAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCATG 2028 Query 84815 GATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGG 84873 ||||| |||||||| ||||| | || ||| ||| || | || || ||| | | | Sbjct 2027 AATACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACA-AAATTTA 1969 Query 84874 CAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAG 84933 | | | || ||| || || || | | |||||||| |||| ||| | || |||| || Sbjct 1968 CGGTCAATAAAGTAGGGATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGTCAG 1909 Query 84934 TGGAGGTGACCCAATCACAGAAG 84956 || |||| | ||| | ||| ||| Sbjct 1908 TGCAGGTTATCCACTAACAAAAG 1886 >seq14731 Length=28268 Score = 179 bits (198), Expect = 4e-40 Identities = 228/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| || || |||| Sbjct 20825 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCCCGGTTAATA 20884 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | || ||||| || || | || || ||| | ||| || | | ||||||||||| Sbjct 20885 ATATAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTACAGATTGATTGAAGTTG 20944 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || | || || || || ||||| ||||||| | | | ||| | |||||||| | | Sbjct 20945 AACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCGTGAACCAAATACTTATT 21004 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || | | ||||||| ||||||| | |||| || Sbjct 21005 ACAGGCCAAGCTGCTAAGAAGAAACGTAAAGAACGAGAGTTGTTGAGACTAACATATTGA 21064 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | | || || || || |||||| | ||||||||||||||||| || |||||| Sbjct 21065 AAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTATAAGTTTCTTCCTCTTGA 21124 Query 84285 CCGAACTTGTAACC 84298 ||||| ||||||| Sbjct 21125 CCGAATCTGTAACC 21138 >seq1192 Length=17806 Score = 136 bits (150), Expect = 5e-27 Identities = 221/316 (70%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||| | |||| || |||||| || ||||||| Sbjct 2642 GGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTTAGCCCGATTAATA 2583 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| | || | | | || |||| || | | | ||||||||| Sbjct 2582 ATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGATTAATTGAAGTTG 2523 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || | || || || || ||||| ||||||| ||| | || | |||||||| || | Sbjct 2522 AACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAACCAAATACCTAT- 2464 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 | ||| |||| || ||||| || || | ||||||| |||||||| | |||| | Sbjct 2463 ATAGGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAACATATTTT 2404 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 | | | || || | || || |||||||| ||||| ||||||||||| || |||||| Sbjct 2403 A---TCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAGTTTCTTCCTCTTGA 2347 Query 84285 CCGAACTTGTAACCAT 84300 ||||| ||||||||| Sbjct 2346 CCGAATATGTAACCAT 2331 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 84507 CCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAA 84566 ||||| |||| || || | | ||| ||||||| || |||||||| ||||| || || Sbjct 2172 CCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATAT 2113 Query 84567 GCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATG 84626 |||||| ||||| || |||||||| ||||| | ||||||||| |||||||||||| Sbjct 2112 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 2053 Query 84627 TAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTA 84683 ||| | | ||||| | ||||| | | | || | |||||| ||||||||| Sbjct 2052 TAACAAGTTATACCAAGTAAAAAGTGTAGAATAGTTAGCTCATAAGGACCACCATTA 1996 >seq23521 Length=29030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 84582 GGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCA 84641 || |||||| | |||||| | |||||| || | ||||||||||||| | | ||||| Sbjct 8570 GGGCGCATATCTAGACGAAAATTAAGTTCTCACTTACGACCCATGTAACAAGCTACACCA 8629 Query 84642 ATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATA 84701 | | ||||| | |||| || | |||||| || |||||||||| |||||| || | | Sbjct 8630 AGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTATATAACCATTCATCAACA 8689 Query 84702 CTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGA 84748 |||||||||||| | || || || || | ||| ||||| |||| Sbjct 8690 -ATGCTGCTTCCCATGTTGGGTAAAAGTGCAAACCTATAGCCGTAGA 8735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570928000894760