Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq19144 114 1e-20 seq2295 111 2e-19 seq36786 86.0 7e-12 seq11816 82.4 9e-11 >seq19144 Length=21831 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| ||| | || |||||||| || ||||| ||| Sbjct 18283 CCTCCTTGATCAACATATCGAGCAGTATCATTAAACACCCTTAACATGGGAACAATGCCA 18224 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| ||||| |||||||||||| | || | |||||| || || Sbjct 18223 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 18164 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || || || ||||| ||| Sbjct 18163 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 18104 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||| || |||||||| |||| || | |||||||| Sbjct 18103 CCTTCAATGCTATCATCCTTCATGCATACCAAGAAACAACT 18063 >seq2295 Length=9791 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||||| ||||||| || | || |||||||| || ||||| ||| Sbjct 7462 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCTTAACATGGGAACAATGCCA 7521 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| ||||| |||||||||||| | || | |||||| || || Sbjct 7522 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 7581 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || || || ||||| ||| Sbjct 7582 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 7641 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||||| || |||||||| |||| || | |||||||| Sbjct 7642 CCTTCGATGCTATCATCCTTCATGCATACCAAGAAACAACT 7682 >seq36786 Length=236 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || |||||||| || ||||| ||||| ||| ||||| ||||| |||||||||||| Sbjct 4 ACCCTTAACATGGGAACAATGCCATTAGATGCCCCATTAGTTCCACGGATATAACTTCCA 63 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 | || | |||||| || || | ||| || || || || ||| || | |||| Sbjct 64 GTGGCACGGATATTATGAACAGACACACCAATCCCTCCAGCAGATTTGCTGATAACAGCA 123 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 ||| || || || ||||| |||||||| || |||||||| |||| || | ||| Sbjct 124 CACTCCTTTAGCGTCTCATATATTCCTTCAATGCTATCATCCTTCATGCATACCAAGAAA 183 Query 48576 CAACT 48580 ||||| Sbjct 184 CAACT 188 >seq11816 Length=7084 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || ||||||||||| ||| | ||||||||| || || || Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || |||||||| || || ||||| | |||||| || Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAAT 2998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561768745255080