Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq19144 114 1e-20
seq2295 111 2e-19
seq36786 86.0 7e-12
seq11816 82.4 9e-11
>seq19144
Length=21831
Score = 114 bits (126), Expect = 1e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||||| ||||||| ||| | || |||||||| || ||||| |||
Sbjct 18283 CCTCCTTGATCAACATATCGAGCAGTATCATTAAACACCCTTAACATGGGAACAATGCCA 18224
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||| ||||| |||||||||||| | || | |||||| || ||
Sbjct 18223 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 18164
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| || | ||||||| || || || ||||| |||
Sbjct 18163 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 18104
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
||||| || |||||||| |||| || | ||||||||
Sbjct 18103 CCTTCAATGCTATCATCCTTCATGCATACCAAGAAACAACT 18063
>seq2295
Length=9791
Score = 111 bits (122), Expect = 2e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||||| ||||||| || | || |||||||| || ||||| |||
Sbjct 7462 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCTTAACATGGGAACAATGCCA 7521
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| ||||| ||||| |||||||||||| | || | |||||| || ||
Sbjct 7522 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 7581
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| || | ||||||| || || || ||||| |||
Sbjct 7582 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 7641
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
||||| || |||||||| |||| || | ||||||||
Sbjct 7642 CCTTCGATGCTATCATCCTTCATGCATACCAAGAAACAACT 7682
>seq36786
Length=236
Score = 86.0 bits (94), Expect = 7e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455
|| |||||||| || ||||| ||||| ||| ||||| ||||| ||||||||||||
Sbjct 4 ACCCTTAACATGGGAACAATGCCATTAGATGCCCCATTAGTTCCACGGATATAACTTCCA 63
Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515
| || | |||||| || || | ||| || || || || ||| || | ||||
Sbjct 64 GTGGCACGGATATTATGAACAGACACACCAATCCCTCCAGCAGATTTGCTGATAACAGCA 123
Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575
||| || || || ||||| |||||||| || |||||||| |||| || | |||
Sbjct 124 CACTCCTTTAGCGTCTCATATATTCCTTCAATGCTATCATCCTTCATGCATACCAAGAAA 183
Query 48576 CAACT 48580
|||||
Sbjct 184 CAACT 188
>seq11816
Length=7084
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||||||||| || || ||||||||||| ||| | ||||||||| || || ||
Sbjct 2904 CAAGCAAAATCACAGTGCAGGCCCTCGTCTCTGGATATTAGTTCATTAGAGAACGTCAAT 2963
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|| |||||||| || || ||||| | |||||| ||
Sbjct 2964 CCTGGCATCAGGCCCCTCTTTTTAAGCCAGAAAAT 2998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561768745255080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |