Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_016563.1 Length=156897 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=12201 Score = 104 bits (114), Expect = 2e-17 Identities = 198/289 (69%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 490 ACGACCTTCATCTAACATACGGTGAGGGCAATACTTGCCATTACGCTCTTGGTGAGTTTT 549 ||| ||||| |||||||||| ||||| |||||||| ||| | | ||| || || Sbjct 5641 ACGTCCTTCTGCTAACATACGATGAGGACAATACTTTCCACTCCATGATTGATGTGTGCG 5582 Query 550 AACTTTAGAAATCGGGATATCGAATCGAACCATTAAGTCAGAGATATGCTCAATAGC--- 606 ||||||| ||| || |||| | | | ||| | ||| || | | ||||| Sbjct 5581 AACTTTACTAATTGGAATATTGTACTGTTTCATGAGCCCAGC--TACGA-CGATAGCTGC 5525 Query 607 ATTTAACTCCGCTTTACGGTAACGCTCTCCTCCACTCATAGAGTAACAGATTTCTACACC 666 ||| |||||||||| || || ||||| ||||| | ||||||||||||||| || || Sbjct 5524 ATTATCCTCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCC 5465 Query 667 AATAGAATGACGGTTACCTCGACCATTACCATCACCCGCGTGCCAAGCATTTCGGTCAAA 726 |||||| | ||| || || ||| ||||||||| |||||||| || || || || Sbjct 5464 AATAGATTTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAA 5405 Query 727 TGGGATTACTTGTTGAACTTCAAAGTCATCGACAGCCGTATGGAAAGAT 775 || || ||||| | |||| || || || || |||| || ||| Sbjct 5404 AGGAATACCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGAT 5356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501638743670840