Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq10156 259 1e-64 seq6213 215 2e-51 seq21559 179 1e-40 seq14731 158 4e-34 seq1192 132 1e-26 >seq10156 Length=9543 Score = 259 bits (286), Expect = 1e-64 Identities = 585/872 (67%), Gaps = 8/872 (1%) Strand=Plus/Plus Query 25904 GCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 25963 || ||||| ||| | || | |||||||| ||| || ||||| | ||| || || Sbjct 543 GCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTGGATCT 602 Query 25964 TTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGA 26023 || | |||||||||||||| || | || || | | | | ||| || || || Sbjct 603 CTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAGGT 662 Query 26024 CTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGA 26083 | || |||||||| || |||||||| | | || || ||| |||| |||||||| Sbjct 663 TTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCGGT 722 Query 26084 CCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAG 26143 || | | | || ||| | | ||||| ||| | || ||||| || || | || Sbjct 723 CCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 782 Query 26144 TGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCA 26203 |||||||| || ||| | || ||| || ||||| || |||||||| ||||||| Sbjct 783 TGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCACCT 842 Query 26204 CTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGAT 26263 | | || ||| | || | |||||| | || || | || ||||| || ||| | || Sbjct 843 ATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAAT 902 Query 26264 GGAATGCCTCTTGGTATCTCT-GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACA 26322 || |||||| | || || ||| |||||||| ||||||||| | ||||||| || | || Sbjct 903 GGTATGCCTTTAGGAAT-TCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGCA 961 Query 26323 TAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCT 26382 || || || ||||||||||| || ||| || || | | || ||| |||| | | Sbjct 962 CAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGCTCCTT 1021 Query 26383 TTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTT--ATTGCAGAAACGACAGAG 26440 || ||||||||| || ||||| |||| | | || || |||||| ||||| Sbjct 1022 ATTTAGTGCTATGCATGGTTCCTTGGTAACTT--TTAGTTTGATAAGAGAAACCACAGAA 1079 Query 26441 GAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTC 26500 | | || ||| | | || || || |||| ||||| || || |||||| | Sbjct 1080 AATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTATA 1139 Query 26501 GCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGT 26560 ||||| || || || ||||| ||| || |||| ||||| ||||| || ||| ||| Sbjct 1140 GCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCGT 1199 Query 26561 TCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGT 26620 ||| | |||||||| | || |||||||| || || || ||| | | || | || Sbjct 1200 TCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTAAGT 1258 Query 26621 ATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTT 26680 || |||||||||| || |||||||| || || ||||| || || | ||||| ||| | Sbjct 1259 ATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATAGT 1318 Query 26681 AATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAA 26740 | || ||||| || ||||||||| | | || || | |||| | || | || Sbjct 1319 GAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGGAG 1378 Query 26741 GTTATGCACGAGCGTAATGCTCATAACTTTCC 26772 |||||||| || | |||||||||||| ||||| Sbjct 1379 GTTATGCATGAACATAATGCTCATAA-TTTCC 1409 >seq6213 Length=1415 Score = 215 bits (238), Expect = 2e-51 Identities = 389/563 (69%), Gaps = 7/563 (1%) Strand=Plus/Plus Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284 ||||| | || || |||| || | | |||| |||||| |||| | | || || ||| Sbjct 583 TTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGTCT 641 Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTC 26344 |||||||| ||||||||| |||||||||||| || || || || || ||||||||||| Sbjct 642 GGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTT 701 Query 26345 CATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGT 26404 || ||| || || ||| | || ||||| || | || ||| || |||||| || Sbjct 702 CACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTC 761 Query 26405 TTGGTTACTTCCTCACTT--ATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCT 26462 ||||| |||| | | || || ||||| ||||| | | || ||| | || | Sbjct 762 TTGGTAACTT--TTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 819 Query 26463 ATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 26522 | || || |||| ||||| | ||||||||| | ||||| || || || ||||| Sbjct 820 AATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCC 879 Query 26523 GATTAAT-TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || |||||| |||| ||||| || ||| |||| | | |||||||| | | Sbjct 880 GATTGATCTTTTCA-TATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACA 938 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||| || | | || ||| | || ||| | ||||| |||| ||||| | ||| Sbjct 939 GATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAAC 998 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||| || ||||| || | | ||||| ||| | || |||| || Sbjct 999 CTAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACT 1058 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 1059 TGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 1118 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 |||||||| || || ||| |||| Sbjct 1119 CATAACTTCCCTCTAGACCTAGC 1141 >seq21559 Length=2991 Score = 179 bits (198), Expect = 1e-40 Identities = 492/745 (66%), Gaps = 13/745 (2%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| ||||| | || | ||||| || || || ||| | |||||||| || || | Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 || || |||| ||| | | | | | | ||| ||||| | || ||||| ||||| Sbjct 1947 ATAAT-CCCTACTTTATTGACCGTAAATTT-TGTATTTATTGTAGCTTTCATTGCAGCGT 2004 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || | ||| || ||| || || || | |||||||||| Sbjct 2005 CTCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACA 2064 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || | || | | | ||| | || | || | ||||||||||| | Sbjct 2065 ATATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAA 2124 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | | || || ||| |||| |||||||| || ||| | || ||| Sbjct 2125 TATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTG 2184 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | |||| || | || ||||| ||| || | |||||||||| || || Sbjct 2185 TTCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCA 2244 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| | || ||||| | |||||||| |||| || | | || ||| Sbjct 2245 GTCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTA 2304 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | | |||||| | || || | || ||||| || ||| |||||| |||||| | | | Sbjct 2305 CTATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAA 2364 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 ||| ||||||| ||||||||| | |||||||||| | | | || || ||||||| Sbjct 2365 TCTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACC 2424 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC---TTTTCGCTGCTATGC 26396 |||| || ||| | || ||||| || ||| | ||||| | || || ||||| Sbjct 2425 CATTTCACATGTTAGACGTAGCTGGAGTATTC--AGCAGCTCCTTTATTTAGTGTTATGC 2482 Query 26397 ACGGAAGT--TTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAA 26454 | || | |||| ||||| | || ||||| ||||| | | || || Sbjct 2483 A--TAATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAA 2540 Query 26455 TTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTA 26514 | | | || || || ||||| ||||| || ||||||||||| ||||| || || || Sbjct 2541 TGAAGATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTA 2600 Query 26515 CTTTGGGAGATTAATTTTTCAGTAT 26539 ||||| |||| || ||||| ||| Sbjct 2601 TTTTGGCCGATTGATCTTTCAATAT 2625 Score = 132 bits (146), Expect = 1e-26 Identities = 213/306 (70%), Gaps = 9/306 (3%) Strand=Plus/Plus Query 26488 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTT 26547 |||||||||||| ||||| || || || ||||| |||| || ||||| ||||| ||||| Sbjct 2622 ATATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTTCAATATGCTAGTTT 2681 Query 26548 TAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCT 26607 || ||| |||||| | |||||||| | | ||||||| || | || || ||| | Sbjct 2682 CAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGGTT 2741 Query 26608 GACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTC 26667 || || | ||||| |||| || || || || ||||| | | ||||| || || | Sbjct 2742 CACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAATA 2801 Query 26668 AGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGAT-GTATTA--------AA 26718 ||||| ||| | | || ||||| || ||||||||| ||||| || Sbjct 2802 TGTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATTAACTGGGTTAA 2861 Query 26719 CCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 | | | |||| | || | || |||||||| || ||||||||||||||||| || || | Sbjct 2862 CTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGG 2921 Query 26779 CTTAGC 26784 | |||| Sbjct 2922 CCTAGC 2927 >seq14731 Length=28268 Score = 158 bits (174), Expect = 4e-34 Identities = 224/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 || || ||||| ||||| || ||||||||||| | ||| || || || ||||| ||| Sbjct 21129 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTTGGCCAATTG 21070 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587 || ||||| |||| ||| | || ||| |||||| | | |||||| | || ||||| Sbjct 21069 ATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTAGCAGCTTGG 21010 Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647 || || | | || ||| | || || | | ||| |||| ||||| || |||||||| Sbjct 21009 CCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTCAACCTAAAC 20950 Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCT 26707 | || ||||| || || || ||||| ||| | | || |||| || |||||| Sbjct 20949 AGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAACACTTGGGCT 20890 Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767 || | | ||||| |||||||| || | ||||||||||| || ||||||||||||||| Sbjct 20889 TATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 20830 Query 26768 TTTCCACTTGACTTA 26782 || || || ||| || Sbjct 20829 TTCCCTCTAGACCTA 20815 >seq1192 Length=17806 Score = 132 bits (146), Expect = 1e-26 Identities = 229/331 (69%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 26454 ATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGT 26513 || |||| || | || || ||||| ||||| || ||||| ||||| ||||| || || | Sbjct 2328 ATGATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTT 2387 Query 26514 ACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCT 26573 | | ||| |||| || | |||| ||||| || ||| |||||| | ||||||| Sbjct 2388 ATTCTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCT 2444 Query 26574 TTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGG 26633 | | || ||| ||| | | || || ||| | || || | ||||| |||| |||| Sbjct 2445 TCTTAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGG 2503 Query 26634 CATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAA 26693 | || |||||||| | || ||||| || | || ||||| ||| | | || |||| Sbjct 2504 CTTTCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAA 2563 Query 26694 TACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGC 26753 | | ||||||||| | | || || |||||||| || | |||||| ||| || | Sbjct 2564 TTAACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAAC 2623 Query 26754 GTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||||||||||| || | ||| |||| Sbjct 2624 GTAATGCTCATAACTTCCCTCCAGACCTAGC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146642074228728