Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 259 1e-64
seq6213 215 2e-51
seq21559 179 1e-40
seq14731 158 4e-34
seq1192 132 1e-26
>seq10156
Length=9543
Score = 259 bits (286), Expect = 1e-64
Identities = 585/872 (67%), Gaps = 8/872 (1%)
Strand=Plus/Plus
Query 25904 GCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 25963
|| ||||| ||| | || | |||||||| ||| || ||||| | ||| || ||
Sbjct 543 GCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTGGATCT 602
Query 25964 TTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGA 26023
|| | |||||||||||||| || | || || | | | | ||| || || ||
Sbjct 603 CTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAGGT 662
Query 26024 CTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGA 26083
| || |||||||| || |||||||| | | || || ||| |||| ||||||||
Sbjct 663 TTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCGGT 722
Query 26084 CCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAG 26143
|| | | | || ||| | | ||||| ||| | || ||||| || || | ||
Sbjct 723 CCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 782
Query 26144 TGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCA 26203
|||||||| || ||| | || ||| || ||||| || |||||||| |||||||
Sbjct 783 TGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCACCT 842
Query 26204 CTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGAT 26263
| | || ||| | || | |||||| | || || | || ||||| || ||| | ||
Sbjct 843 ATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAAT 902
Query 26264 GGAATGCCTCTTGGTATCTCT-GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACA 26322
|| |||||| | || || ||| |||||||| ||||||||| | ||||||| || | ||
Sbjct 903 GGTATGCCTTTAGGAAT-TCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGCA 961
Query 26323 TAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCT 26382
|| || || ||||||||||| || ||| || || | | || ||| |||| | |
Sbjct 962 CAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGCTCCTT 1021
Query 26383 TTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTT--ATTGCAGAAACGACAGAG 26440
|| ||||||||| || ||||| |||| | | || || |||||| |||||
Sbjct 1022 ATTTAGTGCTATGCATGGTTCCTTGGTAACTT--TTAGTTTGATAAGAGAAACCACAGAA 1079
Query 26441 GAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTC 26500
| | || ||| | | || || || |||| ||||| || || |||||| |
Sbjct 1080 AATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTATA 1139
Query 26501 GCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGT 26560
||||| || || || ||||| ||| || |||| ||||| ||||| || ||| |||
Sbjct 1140 GCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCGT 1199
Query 26561 TCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGT 26620
||| | |||||||| | || |||||||| || || || ||| | | || | ||
Sbjct 1200 TCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTAAGT 1258
Query 26621 ATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTT 26680
|| |||||||||| || |||||||| || || ||||| || || | ||||| ||| |
Sbjct 1259 ATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATAGT 1318
Query 26681 AATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAA 26740
| || ||||| || ||||||||| | | || || | |||| | || | ||
Sbjct 1319 GAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGGAG 1378
Query 26741 GTTATGCACGAGCGTAATGCTCATAACTTTCC 26772
|||||||| || | |||||||||||| |||||
Sbjct 1379 GTTATGCATGAACATAATGCTCATAA-TTTCC 1409
>seq6213
Length=1415
Score = 215 bits (238), Expect = 2e-51
Identities = 389/563 (69%), Gaps = 7/563 (1%)
Strand=Plus/Plus
Query 26225 TTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCT 26284
||||| | || || |||| || | | |||| |||||| |||| | | || || |||
Sbjct 583 TTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGTCT 641
Query 26285 GGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTC 26344
|||||||| ||||||||| |||||||||||| || || || || || |||||||||||
Sbjct 642 GGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTT 701
Query 26345 CATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGT 26404
|| ||| || || ||| | || ||||| || | || ||| || |||||| ||
Sbjct 702 CACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTC 761
Query 26405 TTGGTTACTTCCTCACTT--ATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCT 26462
||||| |||| | | || || ||||| ||||| | | || ||| | || |
Sbjct 762 TTGGTAACTT--TTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 819
Query 26463 ATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 26522
| || || |||| ||||| | ||||||||| | ||||| || || || |||||
Sbjct 820 AATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCC 879
Query 26523 GATTAAT-TTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581
|||| || |||||| |||| ||||| || ||| |||| | | |||||||| | |
Sbjct 880 GATTGATCTTTTCA-TATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACA 938
Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641
|||||| || | | || ||| | || ||| | ||||| |||| ||||| | |||
Sbjct 939 GATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAAC 998
Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701
||||| || ||||| || | | ||||| ||| | || |||| ||
Sbjct 999 CTAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACT 1058
Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761
||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||||
Sbjct 1059 TGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 1118
Query 26762 CATAACTTTCCACTTGACTTAGC 26784
|||||||| || || ||| ||||
Sbjct 1119 CATAACTTCCCTCTAGACCTAGC 1141
>seq21559
Length=2991
Score = 179 bits (198), Expect = 1e-40
Identities = 492/745 (66%), Gaps = 13/745 (2%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|||||| ||||| | || | ||||| || || || ||| | |||||||| || || |
Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946
Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919
|| || |||| ||| | | | | | | ||| ||||| | || ||||| |||||
Sbjct 1947 ATAAT-CCCTACTTTATTGACCGTAAATTT-TGTATTTATTGTAGCTTTCATTGCAGCGT 2004
Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979
| || |||||||| ||||| || | ||| || ||| || || || | ||||||||||
Sbjct 2005 CTCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACA 2064
Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039
|||| || | || | | | ||| | || | || | ||||||||||| |
Sbjct 2065 ATATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAA 2124
Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099
| |||||||| | | | || || ||| |||| |||||||| || ||| | || |||
Sbjct 2125 TATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTG 2184
Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159
| | |||| || | || ||||| ||| || | |||||||||| || ||
Sbjct 2185 TTCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCA 2244
Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219
| || || ||| | || ||||| | |||||||| |||| || | | || |||
Sbjct 2245 GTCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTA 2304
Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279
| | |||||| | || || | || ||||| || ||| |||||| |||||| | | |
Sbjct 2305 CTATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAA 2364
Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339
||| ||||||| ||||||||| | |||||||||| | | | || || |||||||
Sbjct 2365 TCTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACC 2424
Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC---TTTTCGCTGCTATGC 26396
|||| || ||| | || ||||| || ||| | ||||| | || || |||||
Sbjct 2425 CATTTCACATGTTAGACGTAGCTGGAGTATTC--AGCAGCTCCTTTATTTAGTGTTATGC 2482
Query 26397 ACGGAAGT--TTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAA 26454
| || | |||| ||||| | || ||||| ||||| | | || ||
Sbjct 2483 A--TAATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAA 2540
Query 26455 TTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTA 26514
| | | || || || ||||| ||||| || ||||||||||| ||||| || || ||
Sbjct 2541 TGAAGATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTA 2600
Query 26515 CTTTGGGAGATTAATTTTTCAGTAT 26539
||||| |||| || ||||| |||
Sbjct 2601 TTTTGGCCGATTGATCTTTCAATAT 2625
Score = 132 bits (146), Expect = 1e-26
Identities = 213/306 (70%), Gaps = 9/306 (3%)
Strand=Plus/Plus
Query 26488 ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTT 26547
|||||||||||| ||||| || || || ||||| |||| || ||||| ||||| |||||
Sbjct 2622 ATATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTTCAATATGCTAGTTT 2681
Query 26548 TAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCT 26607
|| ||| |||||| | |||||||| | | ||||||| || | || || ||| |
Sbjct 2682 CAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGGTT 2741
Query 26608 GACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTC 26667
|| || | ||||| |||| || || || || ||||| | | ||||| || || |
Sbjct 2742 CACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAATA 2801
Query 26668 AGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGAT-GTATTA--------AA 26718
||||| ||| | | || ||||| || ||||||||| ||||| ||
Sbjct 2802 TGTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATTAACTGGGTTAA 2861
Query 26719 CCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778
| | | |||| | || | || |||||||| || ||||||||||||||||| || || |
Sbjct 2862 CTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGG 2921
Query 26779 CTTAGC 26784
| ||||
Sbjct 2922 CCTAGC 2927
>seq14731
Length=28268
Score = 158 bits (174), Expect = 4e-34
Identities = 224/315 (71%), Gaps = 0/315 (0%)
Strand=Plus/Minus
Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527
|| || ||||| ||||| || ||||||||||| | ||| || || || ||||| |||
Sbjct 21129 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTTGGCCAATTG 21070
Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587
|| ||||| |||| ||| | || ||| |||||| | | |||||| | || |||||
Sbjct 21069 ATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTAGCAGCTTGG 21010
Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647
|| || | | || ||| | || || | | ||| |||| ||||| || ||||||||
Sbjct 21009 CCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTCAACCTAAAC 20950
Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCT 26707
| || ||||| || || || ||||| ||| | | || |||| || ||||||
Sbjct 20949 AGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAACACTTGGGCT 20890
Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767
|| | | ||||| |||||||| || | ||||||||||| || |||||||||||||||
Sbjct 20889 TATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 20830
Query 26768 TTTCCACTTGACTTA 26782
|| || || ||| ||
Sbjct 20829 TTCCCTCTAGACCTA 20815
>seq1192
Length=17806
Score = 132 bits (146), Expect = 1e-26
Identities = 229/331 (69%), Gaps = 4/331 (1%)
Strand=Plus/Plus
Query 26454 ATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGT 26513
|| |||| || | || || ||||| ||||| || ||||| ||||| ||||| || || |
Sbjct 2328 ATGATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTT 2387
Query 26514 ACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCT 26573
| | ||| |||| || | |||| ||||| || ||| |||||| | |||||||
Sbjct 2388 ATTCTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCT 2444
Query 26574 TTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGG 26633
| | || ||| ||| | | || || ||| | || || | ||||| |||| ||||
Sbjct 2445 TCTTAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGG 2503
Query 26634 CATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAA 26693
| || |||||||| | || ||||| || | || ||||| ||| | | || ||||
Sbjct 2504 CTTTCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAA 2563
Query 26694 TACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGC 26753
| | ||||||||| | | || || |||||||| || | |||||| ||| || |
Sbjct 2564 TTAACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAAC 2623
Query 26754 GTAATGCTCATAACTTTCCACTTGACTTAGC 26784
|||||||||||||||| || | ||| ||||
Sbjct 2624 GTAATGCTCATAACTTCCCTCCAGACCTAGC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146642074228728
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