Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq36798 107 1e-18 seq247 107 1e-18 seq14506 104 2e-17 seq5564 100 2e-16 seq45547 89.7 4e-13 seq756 87.8 1e-12 seq26443 84.2 2e-11 seq25669 84.2 2e-11 >seq36798 Length=236 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| |||||||| || | ||| | ||| | || || Sbjct 221 ACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTCA 162 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| | || ||||| | |||| || |||||||| | Sbjct 161 AGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTGA 102 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | | || || |||||| |||| || ||||| || Sbjct 101 ATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTTC 42 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 41 CCTGTCAGAGTTTTCACGAAAATCTGCAT 13 >seq247 Length=47399 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| ||||| |||||||| || | ||| | ||| | || || Sbjct 32990 ACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTCA 33049 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| | || ||||| | |||| || |||||||| | Sbjct 33050 AGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTGA 33109 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | | || || |||||| |||| || ||||| || Sbjct 33110 ATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTTC 33169 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 33170 CCTGTCAGAGTTTTCACGAAAATCTGCAT 33198 >seq14506 Length=85774 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| || || | ||||| || || ||| ||| || || || || || |||| Sbjct 52631 CCGCCCCTGAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCC 52690 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | |||||| || ||||| ||||| || |||||||| | |||| Sbjct 52691 AGGGTCCTCCCATCCTCGAGCTGCTTTCCTGCAAAGATCAGCCGTTGTTGATCTGGGGGA 52750 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || ||| ||| Sbjct 52751 ATGCCCTCCTTGTCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCGGAACTCTCAACC 52810 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || ||||| |||| |||||| ||||| || ||||| Sbjct 52811 TCCAAGGTAATGGTCTTTCCAGTCAGAGTTTTCACAAAGATTTGCAT 52857 >seq5564 Length=26244 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||||| || || ||| ||| || || || || || |||| Sbjct 4660 GCCACCCCTGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 4601 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || |||| | || || | |||||| || ||||| |||| | ||| ||||||| || Sbjct 4600 CAGGGTTCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGG 4541 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||||||| ||| ||| | | | || || ||| || Sbjct 4540 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCGATCGTGTCAGAGCTCTCAAC 4481 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || ||||| ||||| || || ||||| |||||||| Sbjct 4480 CTCAAGTGTGATTGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 4433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| ||||| | |||||||| || || ||| || ||||| || || || | Sbjct 4887 CCACCCCTGAGCCGAAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCTGCC 4828 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||| | || || | |||||| || ||||| |||| | ||| ||||||| |||| Sbjct 4827 AAGGTTCTCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGGGGA 4768 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||| ||| | | | || || ||| ||| Sbjct 4767 ATTCCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCAATCGTGTCGGAGCTCTCAACC 4708 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || ||||| || | || || ||||| |||||||| Sbjct 4707 TCAAGTGTAATTGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 4661 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| || || |||||| || || ||||| || | | | | | Sbjct 5334 AGACGCAGGACCAAATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCTGCCAAAGTCCTC 5275 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| |||| | ||| ||||||| ||||| |||||| Sbjct 5274 CCATCCTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGGAATACCCTCC 5215 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | ||||| ||| ||||||| ||| Sbjct 5214 TTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCGACCTCCAAAGTA 5155 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || || ||||| Sbjct 5154 ATGGTCTTCCCAGTCAGTGTCTTCACGAAGATTTGCAT 5117 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| |||||||| || || |||| || | || | || |||| ||| Sbjct 5547 TGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCAAGTGTGCGTCCATCTTCCAGTTGC 5488 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || | ||| || || | || | ||||| ||||| || || Sbjct 5487 TTCCCTGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTA 5428 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | || || ||||||||||| || || |||||||| ||| Sbjct 5427 GCTTTCACATTGTCAATCGTGTCCGAGTTCTCCACCTCCAGGGTGATGGTTTTTCCTGTC 5368 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || |||||||||||||| Sbjct 5367 AAAGTCTTCACAAAAATCTGCAT 5345 >seq45547 Length=474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || || || || ||||||||| ||| | | | || || Sbjct 230 ACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAACAAGAGTCCTGCCATCTTCA 289 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||||||||| | || || |||| || || ||||||||||| | Sbjct 290 AGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGAGGGACCCCCTCCTTGTCCTGA 349 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || |||| || | | | | | | || || ||||| |||| || || || ||| Sbjct 350 ATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCCACTTCCAGAGTGATAGTCTTT 409 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||||||| || ||||| Sbjct 410 CCAGTGAAAGTCTTTACAAAGATTTGCAT 438 >seq756 Length=57245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| || || | ||| | || | || ||||||||||| || ||||| Sbjct 50501 CTCCTTCTGGATATTATAGTCCGCAAGAGTACGTCCATCTTCCAACTGCTTCCCTGCAAA 50560 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || |||||| || | || | ||||||||||| ||| || ||| || Sbjct 50561 AATCAATCTCTGTTGGTCTGGCGGGATACCCTCCTTGTCTTGAATTTTAGCTTTCACGTT 50620 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || || ||||| || ||||| || || || Sbjct 50621 GTCAATTGTGTCCGAGCTCTCCACCTCCAAGGTTATTGTTTTCCCAGTCAATGTCTTCAC 50680 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 50681 AAATATCTGCATC 50693 >seq26443 Length=10536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | |||| ||| || || ||| || || || |||||||| | Sbjct 9277 CCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCC 9336 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || |||| |||| |||||| ||||| || ||||| | ||| || |||| ||| Sbjct 9337 AAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 9396 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCCAC 48718 | || |||||||| ||||| ||| || | | | | || | || |||||| Sbjct 9397 ATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTC-GCTGCTCTCCAC 9455 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| |||| || || ||||| |||||||| Sbjct 9456 CTCCAAAGTGATTGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 9503 >seq25669 Length=30460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| |||| || || || ||| ||||||||||||||||| | || | | Sbjct 8992 AGCCGCAGGACCAGGTGGAGTGTCGACTCCTTTTGAATATTGTAATCCGCAAGCGTCCTT 8933 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || | ||| || |||| |||| |||||| Sbjct 8932 CCATCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCC 8873 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || || | | | | || || ||| || |||| || Sbjct 8872 TTATCCTGGATCTTGGCCTTGACGTTATCGATCGTATCAGAACTCTCGACTTCCAGAGTT 8813 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||||||| || | || || ||||| ||||||||| Sbjct 8812 ATCGTTTTTCCGGTGAGCGTCTTGACAAAGATCTGCATC 8774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380712908361231