Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq36798 107 1e-18
seq247 107 1e-18
seq14506 104 2e-17
seq5564 100 2e-16
seq45547 89.7 4e-13
seq756 87.8 1e-12
seq26443 84.2 2e-11
seq25669 84.2 2e-11
>seq36798
Length=236
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || || ||| ||||| |||||||| || | ||| | ||| | || ||
Sbjct 221 ACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTCA 162
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||| ||||| | || ||||| | |||| || |||||||| |
Sbjct 161 AGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTGA 102
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|||||| || ||| | | | | || || |||||| |||| || ||||| ||
Sbjct 101 ATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTTC 42
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| |||||| || |||||||||||
Sbjct 41 CCTGTCAGAGTTTTCACGAAAATCTGCAT 13
>seq247
Length=47399
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || || ||| ||||| |||||||| || | ||| | ||| | || ||
Sbjct 32990 ACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTCCGCAAGAGTCCGACCATCTTCA 33049
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||| ||||| | || ||||| | |||| || |||||||| |
Sbjct 33050 AGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCCTTCCTTGTCTTGA 33109
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|||||| || ||| | | | | || || |||||| |||| || ||||| ||
Sbjct 33110 ATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAAAGTGATCGTCTTC 33169
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| |||||| || |||||||||||
Sbjct 33170 CCTGTCAGAGTTTTCACGAAAATCTGCAT 33198
>seq14506
Length=85774
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|||||||| || || | ||||| || || ||| ||| || || || || || ||||
Sbjct 52631 CCGCCCCTGAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCC 52690
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | | | || || | |||||| || ||||| ||||| || |||||||| | ||||
Sbjct 52691 AGGGTCCTCCCATCCTCGAGCTGCTTTCCTGCAAAGATCAGCCGTTGTTGATCTGGGGGA 52750
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| ||||| || ||| | | | || || ||| |||
Sbjct 52751 ATGCCCTCCTTGTCTTGTATCTTGGCCTTGACATTGTCGATTGTGTCGGAACTCTCAACC 52810
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || ||||| |||| |||||| ||||| || |||||
Sbjct 52811 TCCAAGGTAATGGTCTTTCCAGTCAGAGTTTTCACAAAGATTTGCAT 52857
>seq5564
Length=26244
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | ||||| || || ||| ||| || || || || || ||||
Sbjct 4660 GCCACCCCTGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 4601
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| |||| | || || | |||||| || ||||| |||| | ||| ||||||| ||
Sbjct 4600 CAGGGTTCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGG 4541
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| ||||||||||| ||||||| ||| ||| | | | || || ||| ||
Sbjct 4540 AATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCGATCGTGTCAGAGCTCTCAAC 4481
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | || || || ||||| ||||| || || ||||| ||||||||
Sbjct 4480 CTCAAGTGTGATTGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 4433
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| ||||| | |||||||| || || ||| || ||||| || || || |
Sbjct 4887 CCACCCCTGAGCCGAAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCTGCC 4828
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| ||| | || || | |||||| || ||||| |||| | ||| ||||||| ||||
Sbjct 4827 AAGGTTCTCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGGGGA 4768
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| |||||| ||| ||| | | | || || ||| |||
Sbjct 4767 ATTCCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCAATCGTGTCGGAGCTCTCAACC 4708
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| || ||||| || | || || ||||| ||||||||
Sbjct 4707 TCAAGTGTAATTGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 4661
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||||| || || |||||| || || ||||| || | | | | |
Sbjct 5334 AGACGCAGGACCAAATGGAGGGTTGACTCTTTCTGGATGTTGTAGTCTGCCAAAGTCCTC 5275
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || ||||| |||| | ||| ||||||| ||||| ||||||
Sbjct 5274 CCATCCTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGGAATACCCTCC 5215
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||||| || ||| | | | ||||| ||| ||||||| |||
Sbjct 5214 TTGTCTTGAATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCGACCTCCAAAGTA 5155
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| || || || || || |||||
Sbjct 5154 ATGGTCTTCCCAGTCAGTGTCTTCACGAAGATTTGCAT 5117
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| |||||||| || || |||| || | || | || |||| |||
Sbjct 5547 TGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCAAGTGTGCGTCCATCTTCCAGTTGC 5488
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| || ||||| || || | ||| || || | || | ||||| ||||| || ||
Sbjct 5487 TTCCCTGCAAAGATTAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATTTTA 5428
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | || || ||||||||||| || || |||||||| |||
Sbjct 5427 GCTTTCACATTGTCAATCGTGTCCGAGTTCTCCACCTCCAGGGTGATGGTTTTTCCTGTC 5368
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
||||| || ||||||||||||||
Sbjct 5367 AAAGTCTTCACAAAAATCTGCAT 5345
>seq45547
Length=474
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || ||| || || || || ||||||||| ||| | | | || ||
Sbjct 230 ACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAACAAGAGTCCTGCCATCTTCA 289
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||||||||| | || || |||| || || ||||||||||| |
Sbjct 290 AGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGAGGGACCCCCTCCTTGTCCTGA 349
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| |||| || | | | | | | || || ||||| |||| || || || |||
Sbjct 350 ATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCCACTTCCAGAGTGATAGTCTTT 409
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| |||||||| || |||||
Sbjct 410 CCAGTGAAAGTCTTTACAAAGATTTGCAT 438
>seq756
Length=57245
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || ||||| || || | ||| | || | || ||||||||||| || |||||
Sbjct 50501 CTCCTTCTGGATATTATAGTCCGCAAGAGTACGTCCATCTTCCAACTGCTTCCCTGCAAA 50560
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| || |||||| || | || | ||||||||||| ||| || ||| ||
Sbjct 50561 AATCAATCTCTGTTGGTCTGGCGGGATACCCTCCTTGTCTTGAATTTTAGCTTTCACGTT 50620
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || ||||||||||| || || ||||| || ||||| || || ||
Sbjct 50621 GTCAATTGTGTCCGAGCTCTCCACCTCCAAGGTTATTGTTTTCCCAGTCAATGTCTTCAC 50680
Query 48755 AAAAATCTGCATC 48767
||| |||||||||
Sbjct 50681 AAATATCTGCATC 50693
>seq26443
Length=10536
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| |||| | |||| ||| || || ||| || || || |||||||| |
Sbjct 9277 CCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGCC 9336
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || |||| |||| |||||| ||||| || ||||| | ||| || |||| |||
Sbjct 9337 AAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 9396
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGC-CTCCAC 48718
| || |||||||| ||||| ||| || | | | | || | || ||||||
Sbjct 9397 ATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTC-GCTGCTCTCCAC 9455
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || ||||| |||| || || ||||| ||||||||
Sbjct 9456 CTCCAAAGTGATTGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 9503
>seq25669
Length=30460
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
||||||| |||| || || || ||| ||||||||||||||||| | || | |
Sbjct 8992 AGCCGCAGGACCAGGTGGAGTGTCGACTCCTTTTGAATATTGTAATCCGCAAGCGTCCTT 8933
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || || || | ||| || |||| |||| ||||||
Sbjct 8932 CCATCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCC 8873
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
|| || ||||| || || | | | | || || ||| || |||| ||
Sbjct 8872 TTATCCTGGATCTTGGCCTTGACGTTATCGATCGTATCAGAACTCTCGACTTCCAGAGTT 8813
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||||||||||| || | || || ||||| |||||||||
Sbjct 8812 ATCGTTTTTCCGGTGAGCGTCTTGACAAAGATCTGCATC 8774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380712908361231
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