Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq13309 179 7e-40 seq26787 178 2e-39 >seq13309 Length=30306 Score = 179 bits (198), Expect = 7e-40 Identities = 384/568 (68%), Gaps = 13/568 (2%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| |||||| || || | ||||| ||||||||| || ||| ||| |||| ||| Sbjct 6379 TACAGCAAGCAGGCGAAATCACAGTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAG 6320 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | |||||||| | ||| | || || ||||||||||| | ||| || Sbjct 6319 AAGGTCAATCCAGGCATCAACCCGCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCG 6260 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| || || || |||||||| | |||||||| | |||| | | | Sbjct 6259 GAGAAGAAGATCCCTTCAACGCAGGCGAACGCAATCAGCCTCTCGGC-AAAGCAC--TCC 6203 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | | |||||| | |||||| | ||||||||| | ||| || ||||| || Sbjct 6202 CCGCCGTCGATCCATTTCAACGCCCACTGCGCCTTCTTCGCCACGCAAGGAATCGTGTCG 6143 Query 48362 ATGGCCCGGAAGAG----CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAG 48417 || || ||||| || ||| || | || | ||| | ||||| |||||| Sbjct 6142 ATTGCACGGAACAGACGGCTTTTTTCTTTC----GAATCCTTGATGTAGGTCTCGAGCAG 6087 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 ||||||||| ||||| | ||||| || ||||||||||| ||||||||||| | Sbjct 6086 GAGGCTGTACATCTCGGAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACG 6027 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536 ||||| |||||| || || | ||| || || || ||||||||| ||| || | Sbjct 6026 CGCCTCGGCCACCTGGACCTCCTTCATGAACCT-GCCGGCGAGATTCTCAAGGACGATGC 5968 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || || |||||||| ||||| || | | ||| |||||||||| | || | Sbjct 5967 CGTCGGATGCGGCGAAGAAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTA 5908 Query 48597 GAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 || | |||| | ||||| | || || || || || | ||||||||||| | Sbjct 5907 AGGCGTCCCAGTGGCGAACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGG 5848 Query 48657 CGAGTGCTTTTTTGTACATGCCCCATAT 48684 | ||||| |||||||| |||| || Sbjct 5847 CCTCGGCTTTCTTGTACATCTCCCAGAT 5820 >seq26787 Length=21907 Score = 178 bits (196), Expect = 2e-39 Identities = 435/653 (67%), Gaps = 16/653 (2%) Strand=Plus/Plus Query 48037 GAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGA 48096 || ||||||| |||| || | ||| || || | |||||| ||| ||||| ||| Sbjct 16207 GACAAACTCCCTCTCGATATCCACCGCATCGCGGACAATCCCCTTCACGCGCTCCTCGCT 16266 Query 48097 GGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTC 48156 ||| || | || | | | || |||| ||||| || || | ||||| ||||| Sbjct 16267 GGGCTTCATCTTCAT---CATCCCGTACAGCAAACAGGCGAAATCACAGTGCAGACCTTC 16323 Query 48157 GTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 ||| || ||| ||| ||||||||||| || |||||||| | ||| | || || || Sbjct 16324 GTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCCTCGCTTCTTCAG 16383 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 ||||||||||| ||| || ||||||||||| || || || |||||||| | Sbjct 16384 CCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAGGCGAACGCTAT 16443 Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTT 48336 |||| ||| | |||| | | | | | |||||| | |||||| | ||||| Sbjct 16444 CAGCCGCTCAGC-AAAG--GACTCCCCGCCGTCGATCCATTTCAACGCCCACTGCGCCTT 16500 Query 48337 CTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA----GCTTCTTGCACTCACCTG 48392 |||| || ||| || |||||||| || || ||||| | |||| || | || | Sbjct 16501 CTTCGCGACGCAAGGAATCGTCTCGATTGCGCGGAAAAGGCGGCTTTTTTCTTTC----G 16556 Query 48393 CGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAG 48452 ||| | ||||| |||||| ||||||||| ||||| | ||||| || | Sbjct 16557 AATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATGTTCTCAATCG 16616 Query 48453 CGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCT 48512 |||||||||| ||||||||||| | ||||| ||||| || || | | || | Sbjct 16617 CGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGGACCTC-CTTCATAAACCTG 16675 Query 48513 CCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTA 48571 || || |||||||| ||| || || || || || || |||||||| ||||| || | Sbjct 16676 CCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGCGTG 16735 Query 48572 AGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 | ||| |||||||||| | || | || | |||| | ||||| | || || Sbjct 16736 ATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTCCCAGTGGCGAACGTCCTGAGAGAGATCT 16795 Query 48632 ACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || || | ||||||||||| || ||||| |||||||| |||| || Sbjct 16796 ACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCTTTCTTGTACATCTCCCAGAT 16848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930969257588480