Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq26787 158 2e-33 seq13309 138 2e-27 >seq26787 Length=21907 Score = 158 bits (174), Expect = 2e-33 Identities = 385/571 (67%), Gaps = 17/571 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| ||| || ||| |||||| ||||| ||| | ||||| Sbjct 16848 ATCTGGGAGATGTACAAGAAAGCTGAAGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTC 16789 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | ||||| | | |||| |||| || | ||||||| || || ||| | || Sbjct 16788 TCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCAC 16729 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || || || ||||||||| || || || Sbjct 16728 GTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCAGGTTT 16669 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||| || ||| | |||| | ||| |||||||| |||||||| || || || Sbjct 16668 ATGAAGGAGGTCCAGGTAGCCGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCGATTGA 16610 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG- 25771 || | ||||| ||| |||| || || ||| | ||| ||||| | || ||| Sbjct 16609 GAACATTCACTCCGAGATGTA---CAGCCTCCTGCTCGAGACCTACATCA-AGGATTCGA 16554 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 || | | || || || | || |||||| || || || || || |||||||| Sbjct 16553 AAGAAAAAAGCCGCCTTTTCCGCGCAATCGAGACGATTCCTTGCGTCGCGAAGAAGGCGC 16494 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| |||| |||||| || || | | | |||| ||||||||| |||| | Sbjct 16493 AGTGGGCGTTGAAATGGATCGACGGC---GGGGAGTCCTTTGCTGAGCGGCTGATAGCGT 16437 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAA 25949 | | |||| || || || ||||| ||| ||| | | ||| | || |||||||| || Sbjct 16436 TCGCCTGC-GTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGC-TCAATTTTCTGGCTGAA 16379 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || ||| ||||| || ||| ||| ||||||||||| ||| | ||||| || Sbjct 16378 GAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGAGACGAAGG 16319 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| ||| | ||||| ||||| |||| ||| Sbjct 16318 TCTGCACTGTGATTTCGCCTGTTTGCTGTAC 16288 >seq13309 Length=30306 Score = 138 bits (152), Expect = 2e-27 Identities = 384/573 (67%), Gaps = 21/573 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || | ||| |||||| ||||| ||| | ||||| Sbjct 5820 ATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTC 5879 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | ||||| | | |||| |||| || | ||||||| || || ||| | || Sbjct 5880 TCTCAGGACGTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCAC 5939 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || || || || || || || |||||||| || || ||| Sbjct 5940 GTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCCTTGAGAATCTCGCCGGCAGGTTC 5999 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | | ||| || ||| | |||| | ||| |||||||| |||||||| || || || Sbjct 6000 ATGAAGGAGGTCCAGGTGGCCGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCGATTGA 6058 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG- 25771 || | ||||| ||| |||| || || ||| | ||| ||||| | || ||| Sbjct 6059 GAACATTCACTCCGAGATGTA---CAGCCTCCTGCTCGAGACCTACATCA-AGGATTCGA 6114 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGGCG 25830 || | | || ||||| |||| ||||| ||| || || || | || ||||||| Sbjct 6115 AAGAAAAAAGCCGTCTGTTCCGTGCAATCGA-CACGATTCCTTGCGTGGCGAAGAAGGCG 6173 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | |||||| |||| |||||| || || ||| || |||| |||| ||||| | || Sbjct 6174 CAGTGGGCGTTGAAATGGATCGACGGCGGGGAGTGC----TTTGCCGAGAGGCTGATTGC 6229 Query 25890 CTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTC 25947 || | |||| || || || ||||| ||| ||| | | ||| | || |||||||| Sbjct 6230 GTTCGCCTGC-GTTGAAGGGATCTTCTTCTCCGGAAGCTTCTGC-TCGATTTTCTGGCTG 6287 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || ||| ||||| || || ||| || |||||||| ||| | ||||| Sbjct 6288 AAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGATCTCGCGAGACGAA 6347 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || || ||| | ||||| |||||| |||| ||| Sbjct 6348 GGCCTGCACTGTGATTTCGCCTGCTTGCTGTAC 6380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928282883727680