Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_019502.1 Length=44401 Score E Sequences producing significant alignments: (Bits) Value seq2 2845 0.0 seq1 307 3e-79 seq3 93.3 1e-14 >seq2 Length=12201 Score = 2845 bits (3154), Expect = 0.0 Identities = 1737/1838 (95%), Gaps = 4/1838 (0%) Strand=Plus/Plus Query 34928 GAGTTCACCCAGAAAACAACTGAAATTACAA-AAAGTGTGGATGGAATTAAAGAAACAAT 34986 || |||| | || |||| |||| ||| | ||||||||||||| | ||| || | Sbjct 1804 GACTTCAGCAAGTCAACATATGAA-TTAGAGCAAAGTGTGGATGGTGTAAAATCTACTGT 1862 Query 34987 TACAAAAGTGGAAAATAATCAAAATGGGTTTGATAAACGTGTTGCTACTGTAGAAAAAGA 35046 || || ||| | |||| ||| || |||||||| ||||||||||||||||||||||| Sbjct 1863 AACTAAGGTGCAGGATAACCAAGCCGGATTTGATAAGCGTGTTGCTACTGTAGAAAAAGA 1922 Query 35047 TGCAACTACTATTAAACAAAATGTCTCTTTCATACAAAATACGCAGACAGAACAAGGAAG 35106 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1923 TGCAACTACCATTAAACAAAATGTCTCTTTCATACAAAATACGCAGACAGAACAAGGAAG 1982 Query 35107 ACAATTACAAGAGGCGAAAGCTGGATGGGAAAATACTGCGAAAGCACTTCAAGGTAAAGT 35166 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1983 ACAATTACAAGAGGCGAAAGCTGGATGGGAAAATACTGCGAAAGCACTGCAAGGTAAAGT 2042 Query 35167 TGAGCTTAAACAAGTAGAGGATTATGTTGCGGGATTTAAGATTCCAGAGTTGAAGCAAAC 35226 ||| ||||| |||||||| ||||||||||| || |||||||| || ||||||||||||| Sbjct 2043 TGAACTTAAGCAAGTAGAAGATTATGTTGCTGGGTTTAAGATACCTGAGTTGAAGCAAAT 2102 Query 35227 AGTTGATAAAAATAAACAAGATTTGTTGGGCGAATTAGCTAACAAACTTGCAACGGAACA 35286 |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| Sbjct 2103 AGTTGATAAAAATAAACAAGATTTGTTGGGAGAACTAGCTAATAAACTTGCAACGGAACA 2162 Query 35287 ATTTAATCAGAAAATGACTATGATCGACAACCGTTTCACTATAAATGAAGAGGGTATCAA 35346 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2163 ATTTAATCAGAAAATGACTATGATCGACAACCGTTTCACTATCAATGAAGAGGGTATCAA 2222 Query 35347 TGCCGCAGCAAAAAAGAAAGAAGTATACACAATAGAGCAAGCAAATGGGCAATTTGCCAC 35406 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2223 TGCCGCAGCAAAAAAGAAAGAAGTATACACAATAGAGCAAGCAAATGGACAATTTGCAAA 2282 Query 35407 ATCATCTTATGTAAGAGATATGGAAACCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCT 35466 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2283 AGATTCTTATGTAAGAGATATGGAAACCCGTCTTCAGTTAACTGAAAAGGGCGTTAGTCT 2342 Query 35467 ATCTGTAAAAGAAAATGATGTAATCGCAGCATTCAATATGAGTAAAGAAAACATTACCTT 35526 |||||||||||| || |||||||| |||||||| |||||||| |||||||||||||| || Sbjct 2343 ATCTGTAAAAGAGAACGATGTAATTGCAGCATTTAATATGAGCAAAGAAAACATTACGTT 2402 Query 35527 GAATGCGAACAGGATTAACTTAGTAGGTTTTATAACAGCAAATCATATTAAAGGAAAAGT 35586 |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 2403 GAATGCGAACAGAATTAACTTAGTAGGTTTCATTACAGCAAATCATATTAAAGGAAAAGT 2462 Query 35587 TTTAGAAGGAGTAACACTTAAAACGAGTGGAAACAGATTTGTTGAAATAAATAAACAAGA 35646 ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2463 TTTAGAAGGGGTAACGCTTAAAACAAGTGGAAACAGATTTGTTGAAATAAATAAGCAAGA 2522 Query 35647 CATGAAGATTTTCGATTTAGATAAGCCACGTGGTTATATAGGATTTATGGAGACAAATGA 35706 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| Sbjct 2523 CATGAAGATTTTCGATTTAGATAAGCCACGTGGCTATATAGGATTTATGGAAACAGATGA 2582 Query 35707 TGGAAGTATTCAACCTTCATTAGTCCTTGGTTCTGATAATAGAAAATACGCTGGTACAGG 35766 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2583 TGGAAGTATTCAACCTTCATTAGTCCTTGGTTCTGATAATAGAAAATACGCTGGTACAGG 2642 Query 35767 ATCATTTTATATTTATCAAGTCATGCCGCGAATTAATGGAGTCGATCAACCTTCTAAAGC 35826 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2643 ATCATTTTATATTTATCAAGTCATGCCGCGAATTAATGGAGTTGATCAACCTTCTAAAGC 2702 Query 35827 GTATGCAAAATTTGGGGTTTCTAAAGGAGAAAATGCAGAAGGAACTAATATTTGGTCAAA 35886 ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2703 ATATGCGAAATTTGGGATTTCTAAAGGAGAAAATGCAGAAGGAACTAATATTTGGTCAAA 2762 Query 35887 TTATATTCAAATGCAGAATGACGGTGGACATCTGAGTGTATATTCAGATGGACAATTTCG 35946 |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct 2763 CTATATTCAAATGCATAATGACGGTGGACATCTGAGCGTATATTCTGATGGACAATTTCG 2822 Query 35947 TTTTCAAAACTTGAATGATATTATCTTTGAATCTGAAGGATGGGCTCCAGGATATGGTTA 36006 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2823 TTTTCAAAACTTGAATAATATTATTTTTGAATCTGAAGGATGGGCTCCAGGATATGGTTA 2882 Query 36007 CTTCTCTGTAACTACAACTGAACCACATATTTTTACAAATAACGCGGGGCAGTTTACTTT 36066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2883 CTTCTCTGTAACTACAACTGAACCACATATTTTTACAAATAACGCGGGGCAGTTTACTTT 2942 Query 36067 CAAAAGAAAAGGCAGTGACTATAAAATACATTTCGTAAACGGCGCCACCGATCATGATTT 36126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2943 CAAAAGAAAAGGCAGTGACTATAAAATACATTTCGTAAACGGCGCCACCGATCATGATTT 3002 Query 36127 AATTATGGGTAATGCAATGATAAGGTCAAGTTTTGTACAAGGTTATAACAATGGCTTGCA 36186 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3003 AATTATGGGTAATGCAATGATAAGGTCAAGTTTTGTACAAGGTTATAACAATGGCCTGCA 3062 Query 36187 GATTAAAGATATGATGGGTAAGGGATGGAAAGATATAGAATTAAGAACATTACGAGCGCA 36246 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 3063 GATTAAAGATATGATGGGTAAGGGATGGAAAGATATGGAATTAAGAACATTACGAGCGCA 3122 Query 36247 AGAGAATATTAGCGCTACAGGGCGTATGTGGGCGCAAGAATTTATCCCTAATTCTTCTCG 36306 ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3123 AGAAAATATATCTGCTACAGGACGTATGTGGGCGCAAGAATTTATCCCTAATTCTTCTCG 3182 Query 36307 TAAGCTTAAAACGGACATAGAAGACCTTCCATTCTCTGCTTTAGATAAAATCAACTCTGT 36366 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3183 TACGCTTAAAACGGACATAGAAGACCTTCCATTCTCTGCTTTAGATAAAATCAACTCTGT 3242 Query 36367 AAACATCAAACAGTATCACTTTATAAGAGATGTTGAACGCTTCGAGTCAGGGGAGTCTAT 36426 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3243 AAACATCAAACAGTATCACTTTATAAGAGATGTTGAACGCTTCGAGTCAGGGGAATCTAT 3302 Query 36427 TACACTTCCAATTAATTACGGTATGATTGCGGAGGACTCTGACGATGTATTCACCACACC 36486 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3303 TACACTACCAATTAATTACGGTATGATTGCGGAGGACTCTGACGATGTATTCACCACACC 3362 Query 36487 ACAGAAAGACGCTGTAACACTTTATAGCTCGGTTGCAATTTCTATTCAATCAATACAAGA 36546 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 3363 ACAAAAAGACGCTGTAACACTTTATAGCTCGGTTGCAATTTCTATTCAAGCAATACAAGA 3422 Query 36547 AGTTGACTTTAAAGTTAAAAATCTTCAATTTGACCACGGTATGTTGAAGCAGGAAGTTGA 36606 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 3423 AGTTGACTTTAAAGTTAAAAATCTTCAATTTGACCACGGTATGTGGAAGCAGGAAGTTGA 3482 Query 36607 CACTCTTAAAGAACAACTTGAAGCAGAAAAACTTGAGAAAGTTTCAATGAAAGCTGAAAT 36666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3483 CACTCTTAAAGAACAACTTGAAGCAGAAAAACTTGAGAAAGTTTCAATGAAAGCTGAAAT 3542 Query 36667 TTATGAATTAAAGTTATTAGTACAACAATTAATAAATGAGGAACCAAAGCAGCCATAAGC 36726 | ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 3543 TGATGAATTAAAGGTATTAGTACAACAATTAATAAATGAGAAACCAGAGCAGCCATAAGC 3602 Query 36727 TG-TTTTTATTTTGCACAAAATAGGGCTTTTGTATAAA 36763 || |||||||||||| |||| || ||| |||| ||||| Sbjct 3603 TGTTTTTTATTTTGCGCAAAGTACGGC-TTTGAATAAA 3639 Score = 457 bits (506), Expect = 3e-124 Identities = 404/503 (80%), Gaps = 1/503 (0%) Strand=Plus/Plus Query 37555 AAAGGGAGATGTTCAATAATGGAAATTAGAAAAAATT-AGTTGACCCAAGTAAATATGGT 37613 ||| ||||||||| |||||||||||| |||||||||| |||||| |||| ||||||||| Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245 Query 37614 ACAAAGTGTCCTTATACAATGAATCCAAAATTTATCACAGTTCACAATACGTATAATGAT 37673 || ||||| |||||||||||||||||| |||| || || || |||||||| ||||| ||| Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305 Query 37674 GCGCCAGCTGAGAATGAAATTGCTTATATGATACGAAATAATAATGAGGTGTCATTCCAC 37733 || |||| | || ||| | ||||||||||| || ||| |||| | || || || || Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365 Query 37734 ATTGCAGTAGACGATAAAGAAGCTGTACAAGGCTTACCTTTAGAAAGGAATGCATGGGCT 37793 ||||| |||||||||||||||||||||||||| | |||||||| | || || ||| | Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425 Query 37794 TGTGGAGATGGGAATGGTTCAGGAAACAGAAAGTCGATTAGTGTGGAGATTTGTTATTCT 37853 || || ||||| ||| ||||| | || || ||| | || || || ||||| ||| Sbjct 5426 TGCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCT 5485 Query 37854 TTAAGCGGCGGGGATAGGTATTATAAAGCAGAAAATAATGCAGCTATTGTTGTAGCGCAA 37913 |||| || || ||| | ||||||||||| || ||||||||||||| || ||||| Sbjct 5486 CTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGGG 5545 Query 37914 ATCATGAAACAATACAACATTCCAATAAGTAAAGTTCGCACACACCAATCGTGGAGTGGA 37973 |||||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 5546 CTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGA 5605 Query 37974 AAATACTGCCCGCATCGTATGTTAGCGGAAGGGCGTTGGAATTCTTTTATAGAAAGGGTG 38033 || || || || |||||||||||||| ||||| ||||||||| |||||| ||||| || Sbjct 5606 AAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGGAATAGTTTTATTGAAAGAGTC 5665 Query 38034 CAAAACGCATATAACGGTGGTGG 38056 ||||| |||||||||||||| || Sbjct 5666 CAAAATGCATATAACGGTGGAGG 5688 Score = 390 bits (432), Expect = 3e-104 Identities = 291/341 (85%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 33806 CGAATTCTTAGTAAATTCGGTGAAAAACAAGAAATGCTGGATCAGCTAGATAAATTGGTG 33865 ||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||| Sbjct 1 CGAATCCTTAGTAAATTCGGTGAGAAACAAGAAATACTGGATCAGTTAGATAAATTAGTG 60 Query 33866 AAAGAAGCGAATGAAACAGCAAGTAACGCTAAGAAAGAATCAGAAGCCGCGAAAACACTT 33925 ||||| || ||||||||||| ||| | |||||||||||||| ||||| ||||||||| | Sbjct 61 AAAGATGCAAATGAAACAGCTAGTGATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTG 120 Query 33926 GCCGAAAAGGTACAAGAGAATATTAAAAATAATACTGTTGAAATTATAGAAGCTAAGAAT 33985 || ||||| |||||||||||| |||||||||| || || || || || ||||| |||||| Sbjct 121 GCTGAAAAAGTACAAGAGAATCTTAAAAATAACACGGTAGACATCATTGAAGCAAAGAAT 180 Query 33986 TCGCCAACAACAGGGCTTAAACCTAATAAAACGCTTTGGCGTGATATTAGTAACGGAAAG 34045 | || ||||||||||||| |||| |||| || ||||||||||||||||| || |||||| Sbjct 181 CCACCGACAACAGGGCTTAGACCTTATAAGACACTTTGGCGTGATATTAGCAATGGAAAG 240 Query 34046 CCCGGCATTTTAAAAATATGGACAGGTACAGTTTGGGAATCGGTTGTACCAGATGTTGAA 34105 || || ||||| |||||||||||||| ||| |||||||||||| ||||| |||||||| Sbjct 241 CCTGGTATTTTGAAAATATGGACAGGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGAT 300 Query 34106 TCAGTTAAGAAAGAAACACTTGAACAGGCTAATAAAAATAT 34146 ||||||||||||||||| | ||||||| | ||| |||| Sbjct 301 TCAGTTAAGAAAGAAACGTTGGAACAGGTGACAAAAGATAT 341 Score = 149 bits (164), Expect = 2e-31 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38062 CAGGTTCTACAAAACCATCTAACAATGGTGTAGGTGTTATTACAATTACAGCGGATGTCT 38121 ||| | || | ||||| || || |||| | ||||| | || |||||||| ||||| | Sbjct 5928 CAGCTCCTTCTAAACCTTCAAATGATGGCATTGGTGTAGTAACTATTACAGCTGATGTAT 5987 Query 38122 TACGCGTTCGTACAGGACCAGGAACAAATTATGGCATTGTAAAGAATGTGTATCGAGGGG 38181 |||| |||||||| || |||||||| || ||||| | ||||| |||||||| | | | | Sbjct 5988 TACGTGTTCGTACTGGTCCAGGAACTAACTATGGTGTCGTAAAAAATGTGTACCAAAGTG 6047 Query 38182 AACGCTATCAATCTTGGGGCATTCAAAATGGCTGGTACAACGTTGGTGGAAATCAATGGG 38241 || | |||||||||||||| | | | || ||||| || ||||| || | ||||||| Sbjct 6048 AAAGATATCAATCTTGGGGATATAGAGACGGTTGGTATAATGTTGGCGGCGACCAATGGG 6107 Query 38242 TTTCTGGGGAGTATGTGAGGTTTGA 38266 ||||||| || ||||||| |||||| Sbjct 6108 TTTCTGGTGAATATGTGAAGTTTGA 6132 >seq1 Length=9149 Score = 307 bits (340), Expect = 3e-79 Identities = 250/303 (83%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 11645 TAAAGGAGAATGAAAAATGAATACAATCACTATTAAATTTGGCCAAGGTACAGAAGCTTG 11704 |||||| |||| ||||||||||||||| | |||||||||||| |||||||||| |||||| Sbjct 8009 TAAAGGGGAATAAAAAATGAATACAATTATTATTAAATTTGGACAAGGTACAGCAGCTTG 8068 Query 11705 GAAGGATATGCAAGAAGTTGTTAAGGTACTACATGGTAAAGGATATATCGCTCAGCCTTA 11764 ||||||||||||||| ||| || || |||| | ||||| ||| | | | || || Sbjct 8069 GAAGGATATGCAAGATATTGCGAAAGTGTTACAAGAGAAAGGGTATTCTGTTGAACCGTA 8128 Query 11765 TGAGGACATTGGAACAGTTAAATTAACTAAGGAAATCAATGACGAGTTAGTAGATAAGAA 11824 ||| || |||||||| || ||| |||||||| ||||||||||||| |||||||||||||| Sbjct 8129 TGAAGAAATTGGAACTGTAAAACTAACTAAGAAAATCAATGACGAATTAGTAGATAAGAA 8188 Query 11825 AAGGCAATTCAATTGTGATCTTTGTTTTCAAAACAAGATTATTGAGGAGAAATCAATTTA 11884 || |||||| ||||||||| |||| ||| ||| ||| |||||| || || || ||||| Sbjct 8189 AAAGCAATTTAATTGTGATATTTGCTTTTTAAATAAGGATATTGAAGAAAAGTCTATTTA 8248 Query 11885 TCAATTCGATGAAGATGGTGACATTGTAGCATGTGTAGAATGTGAGAAAAAGGCATTTGA 11944 |||||||||| | ||||||||||||||| ||| |||| ||||||||| | |||||||| Sbjct 8249 TCAATTCGATAAGTCTGGTGACATTGTAGCGTGTATAGATTGTGAGAAACAAGCATTTGA 8308 Query 11945 ACA 11947 ||| Sbjct 8309 ACA 8311 >seq3 Length=4151 Score = 93.3 bits (102), Expect = 1e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 17665 ATGGCTAATAACAAATTAATTATTGAAGTAACTGCGGATACAACTGAAGCATTAGAAGGG 17724 ||||||||||||||||||| ||| | | || ||||| || ||||| ||| || Sbjct 2097 ATGGCTAATAACAAATTAAAGATTAACATTGATGTCGATACGACAGAAGCGTTAAAACAA 2156 Query 17725 ATTAAGGAAGTAACAGAAGCTGCTAATGAATGTGCATCTGCATTAGAGGATTTGGATAA 17783 || ||||||||||| |||||||| |||||||||| ||||||||||| ||||| || Sbjct 2157 ATGAAGGAAGTAACTGAAGCTGCCAATGAATGTGTTGCTGCATTAGAGAGATTGGAGAA 2215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141880012627782