Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_019912.1 Length=36932 Score E Sequences producing significant alignments: (Bits) Value seq2 351 2e-92 >seq2 Length=12201 Score = 351 bits (388), Expect = 2e-92 Identities = 432/588 (73%), Gaps = 3/588 (1%) Strand=Plus/Plus Query 2705 AAAGAAACATCCGAAATAAAAGAAGAGGCTGGCAAAATTTCTACTAAACTAGAAAAAGTA 2764 |||| ||| | ||||| |||| ||| ||||| ||||| || || || ||||| | || Sbjct 1270 AAAGTTACAACTGAAATTAAAGCAGAAGCTGGGAAAATCTCGACAAAGTTAGAACAGGTT 1329 Query 2765 GAAGCGCGCACGGTTGGTGTTGAAAATTGGCTGATTAATACAGGCCCAAACGAAAAACCA 2824 || || || || || || |||||||| ||||| || ||||||||||||||||||| ||| Sbjct 1330 GAGGCTCGTACTGTAGGCGTTGAAAACTGGCTAATCAATACAGGCCCAAACGAAAGACCT 1389 Query 2825 CAAACAATTGGTATGATCGGCGGTGCTCAAGTAAATAAAGCTAAATTCATCGTACAGCCT 2884 |||||||| || ||||| || || || | ||||||| || || | || |||||| Sbjct 1390 CAAACAATCGGGATGATTGGTGGCGCGGTGTTGAATAAAGTTACATCATTTGTTCAGCCT 1449 Query 2885 GGTGAATACATTGTATTAGAATGTTTGGATCATACTGACTCTTTCTATCAATTCCATTTA 2944 || |||||| | | | |||||| |||||||| ||| | || |||||||||||| || Sbjct 1450 GGCGAATACGTAGCGATTGAATGTCAAGATCATACAGACGCCTTTTATCAATTCCATCTA 1509 Query 2945 GATAACACAAAAATGGGTGACTTTGAAAAAGATAAAGATATGACTATATCTATTGATATG 3004 ||||| || || || || ||||||||||||| |||||||| || |||||| | || || Sbjct 1510 GATAATACTAAGATAGGAGACTTTGAAAAAGGGAAAGATATAACAATATCTTTAGACATT 1569 Query 3005 CAAAATGATTATCAAGTTGACTTTTTGTTATTTCAATTTATCAACGGTGTATGGAATGAG 3064 ||||||||| | | || ||| | ||||| |||| |||||||| |||| |||| Sbjct 1570 CAAAATGATGTGCTTTTAGATTTTATTTTATTCCAATACATCAACGGATCGTGGAGTGAG 1629 Query 3065 AATGTACAAAAAGGGATACCCGCATCAAGTGCATGGAAGCGTGAGTCATGGACGTTTAAA 3124 |||||||| | || || | || | ||| ||||||||||||||||||||| Sbjct 1630 TCAGTACAAAAGCCTGTGCCAGC-TAAA--GACTGGCGTCGTGAGTCATGGACGTTTAAA 1686 Query 3125 GTTGATCCGAAAGCCACAGGCTGGGGATTAAGAATAAGGTTTGCTAGAAATGCAAATTCT 3184 | ||| || || || |||||||| ||||| | ||||||||||||| | ||| Sbjct 1687 ATCGATGTTCGTGCTACTGGTTGGGGATTTAGAATTCGTTTTGCTAGAAATGAAGCATCT 1746 Query 3185 GTAGGTAAAAGATTGCGTATGAAAAAAGCAAAACTTGAAAAAGGATCAATACCTACAGAC 3244 ||| ||||| || ||| | || ||||| ||||| ||||| || || | || |||||| Sbjct 1747 AAAGGGAAAAGGTTTCGTTTCAAGAAAGCTAAACTAGAAAAGGGTTCTGTTCCAACAGAC 1806 Query 3245 TTTTCAAAGTCAACTTATGAATTAGAACAAAGTTTCAACGGCGTAAAA 3292 || |||||||| ||||||||||| |||||| | | || |||||| Sbjct 1807 TTCAGCAAGTCAACATATGAATTAGAGCAAAGTGTGGATGGTGTAAAA 1854 Score = 80.6 bits (88), Expect = 6e-11 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 4772 GTATACACGAAACAAGAAGCCGATGGAACATTTGCCAAAGAATCGCACGTAAAAACGTTA 4831 |||||||| | | | |||| ||||| |||||| ||||| || | |||| | | Sbjct 2245 GTATACACAATAGAGCAAGCAAATGGACAATTTGCAAAAGATTCTTATGTAAGAGATATG 2304 Query 4832 GAAGCTAAAATTCTAGTGAAC-GAAAGAAATATTAGTCTATCAGTAAAAGAGAATGATAT 4890 ||| | ||| ||| ||| |||| |||||||||| ||||||||||| ||| | Sbjct 2305 GAAACCCGTCTTC-AGTTAACTGAAAAGGGCGTTAGTCTATCTGTAAAAGAGAACGATGT 2363 Query 4891 TATTTCAAAGATCAACATGTCTAAAGAAACAATTTCGATTGAA-GCTAGACGAATTAATT 4949 ||| || | || ||| ||||||| ||| || ||||| || | ||||||| | Sbjct 2364 AATTGCAGCATTTAATATGAGCAAAGAAAACATTACG-TTGAATGCGAACAGAATTAACT 2422 Query 4950 TGATCGGTTTTGTTACGGCCCAACATATTAAAGGGTCTGTTTTAGAAGGTGT-ACGCATC 5008 | | ||||| |||| || | ||||||||||| ||||||||||| || |||| | Sbjct 2423 TAGTAGGTTTCATTACAGCAAATCATATTAAAGGAAAAGTTTTAGAAGGGGTAACGC-TT 2481 Query 5009 AAAACA 5014 |||||| Sbjct 2482 AAAACA 2487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117992948761116