Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_019912.1
Length=36932
Score E
Sequences producing significant alignments: (Bits) Value
seq2 351 2e-92
>seq2
Length=12201
Score = 351 bits (388), Expect = 2e-92
Identities = 432/588 (73%), Gaps = 3/588 (1%)
Strand=Plus/Plus
Query 2705 AAAGAAACATCCGAAATAAAAGAAGAGGCTGGCAAAATTTCTACTAAACTAGAAAAAGTA 2764
|||| ||| | ||||| |||| ||| ||||| ||||| || || || ||||| | ||
Sbjct 1270 AAAGTTACAACTGAAATTAAAGCAGAAGCTGGGAAAATCTCGACAAAGTTAGAACAGGTT 1329
Query 2765 GAAGCGCGCACGGTTGGTGTTGAAAATTGGCTGATTAATACAGGCCCAAACGAAAAACCA 2824
|| || || || || || |||||||| ||||| || ||||||||||||||||||| |||
Sbjct 1330 GAGGCTCGTACTGTAGGCGTTGAAAACTGGCTAATCAATACAGGCCCAAACGAAAGACCT 1389
Query 2825 CAAACAATTGGTATGATCGGCGGTGCTCAAGTAAATAAAGCTAAATTCATCGTACAGCCT 2884
|||||||| || ||||| || || || | ||||||| || || | || ||||||
Sbjct 1390 CAAACAATCGGGATGATTGGTGGCGCGGTGTTGAATAAAGTTACATCATTTGTTCAGCCT 1449
Query 2885 GGTGAATACATTGTATTAGAATGTTTGGATCATACTGACTCTTTCTATCAATTCCATTTA 2944
|| |||||| | | | |||||| |||||||| ||| | || |||||||||||| ||
Sbjct 1450 GGCGAATACGTAGCGATTGAATGTCAAGATCATACAGACGCCTTTTATCAATTCCATCTA 1509
Query 2945 GATAACACAAAAATGGGTGACTTTGAAAAAGATAAAGATATGACTATATCTATTGATATG 3004
||||| || || || || ||||||||||||| |||||||| || |||||| | || ||
Sbjct 1510 GATAATACTAAGATAGGAGACTTTGAAAAAGGGAAAGATATAACAATATCTTTAGACATT 1569
Query 3005 CAAAATGATTATCAAGTTGACTTTTTGTTATTTCAATTTATCAACGGTGTATGGAATGAG 3064
||||||||| | | || ||| | ||||| |||| |||||||| |||| ||||
Sbjct 1570 CAAAATGATGTGCTTTTAGATTTTATTTTATTCCAATACATCAACGGATCGTGGAGTGAG 1629
Query 3065 AATGTACAAAAAGGGATACCCGCATCAAGTGCATGGAAGCGTGAGTCATGGACGTTTAAA 3124
|||||||| | || || | || | ||| |||||||||||||||||||||
Sbjct 1630 TCAGTACAAAAGCCTGTGCCAGC-TAAA--GACTGGCGTCGTGAGTCATGGACGTTTAAA 1686
Query 3125 GTTGATCCGAAAGCCACAGGCTGGGGATTAAGAATAAGGTTTGCTAGAAATGCAAATTCT 3184
| ||| || || || |||||||| ||||| | ||||||||||||| | |||
Sbjct 1687 ATCGATGTTCGTGCTACTGGTTGGGGATTTAGAATTCGTTTTGCTAGAAATGAAGCATCT 1746
Query 3185 GTAGGTAAAAGATTGCGTATGAAAAAAGCAAAACTTGAAAAAGGATCAATACCTACAGAC 3244
||| ||||| || ||| | || ||||| ||||| ||||| || || | || ||||||
Sbjct 1747 AAAGGGAAAAGGTTTCGTTTCAAGAAAGCTAAACTAGAAAAGGGTTCTGTTCCAACAGAC 1806
Query 3245 TTTTCAAAGTCAACTTATGAATTAGAACAAAGTTTCAACGGCGTAAAA 3292
|| |||||||| ||||||||||| |||||| | | || ||||||
Sbjct 1807 TTCAGCAAGTCAACATATGAATTAGAGCAAAGTGTGGATGGTGTAAAA 1854
Score = 80.6 bits (88), Expect = 6e-11
Identities = 170/246 (69%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 4772 GTATACACGAAACAAGAAGCCGATGGAACATTTGCCAAAGAATCGCACGTAAAAACGTTA 4831
|||||||| | | | |||| ||||| |||||| ||||| || | |||| | |
Sbjct 2245 GTATACACAATAGAGCAAGCAAATGGACAATTTGCAAAAGATTCTTATGTAAGAGATATG 2304
Query 4832 GAAGCTAAAATTCTAGTGAAC-GAAAGAAATATTAGTCTATCAGTAAAAGAGAATGATAT 4890
||| | ||| ||| ||| |||| |||||||||| ||||||||||| ||| |
Sbjct 2305 GAAACCCGTCTTC-AGTTAACTGAAAAGGGCGTTAGTCTATCTGTAAAAGAGAACGATGT 2363
Query 4891 TATTTCAAAGATCAACATGTCTAAAGAAACAATTTCGATTGAA-GCTAGACGAATTAATT 4949
||| || | || ||| ||||||| ||| || ||||| || | ||||||| |
Sbjct 2364 AATTGCAGCATTTAATATGAGCAAAGAAAACATTACG-TTGAATGCGAACAGAATTAACT 2422
Query 4950 TGATCGGTTTTGTTACGGCCCAACATATTAAAGGGTCTGTTTTAGAAGGTGT-ACGCATC 5008
| | ||||| |||| || | ||||||||||| ||||||||||| || |||| |
Sbjct 2423 TAGTAGGTTTCATTACAGCAAATCATATTAAAGGAAAAGTTTTAGAAGGGGTAACGC-TT 2481
Query 5009 AAAACA 5014
||||||
Sbjct 2482 AAAACA 2487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117992948761116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |