Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5564 89.7 4e-13 >seq5564 Length=26244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || || |||||||| ||| || ||| || Sbjct 5345 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAAACCATCACCCTGGAGGTGGAGAACTCG 5404 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || | || |||||| ||||||||||| | || ||| || Sbjct 5405 GACACGATTGACAATGTGAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCAGACCAG 5464 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || || ||| |||||||| || | || || |||||| Sbjct 5465 CAGAGGCTAATCTTTGCAGGGAAGCAACTGGAAGATGGACGCACACTTGCTGACTATAAC 5524 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || || ||||||||| Sbjct 5525 ATTCAAAAGGAGTCCACTCTGCAC 5548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425153879897463