Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq10156 277 5e-70 seq6213 210 6e-50 seq14731 187 7e-43 seq21559 165 2e-36 seq1192 145 2e-30 >seq10156 Length=9543 Score = 277 bits (306), Expect = 5e-70 Identities = 513/751 (68%), Gaps = 5/751 (1%) Strand=Plus/Minus Query 21480 AGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACGGTTA 21539 || ||||| || || || || | |||||||| ||||| | |||| ||| | || ||| Sbjct 1413 AGAGGGAAATTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCCGATTA 1354 Query 21540 AGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTTAAAG 21599 | ||| |||||||| ||||| || | | || ||| | | | | | |||| || ||| Sbjct 1353 ATAATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAAG 1294 Query 21600 TTGAAACCATTCAAGTTGAAAGCCATGGTAG--ACACGCCAAGCGCAGCAAACCAAATAC 21657 ||||| || || | |||||||||||| || | || |||| | ||||||||| Sbjct 1293 TTGAATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGCCATG---ACCAAATAC 1237 Query 21658 CTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCAT 21717 || |||||||| | || | |||||||| | | ||| || || || || ||||||| Sbjct 1236 CTCTTACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCAT 1177 Query 21718 ATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCT 21777 || | ||||| | | |||||||| || |||||||| | |||||| ||||| ||||||| Sbjct 1176 ATCGAAAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCT 1117 Query 21778 CTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTG 21837 ||| ||| || |||| | | || || | | ||| || || || | || | Sbjct 1116 CTTAACCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAAC 1057 Query 21838 ACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCA 21897 | || |||| | ||| ||||||||| || || |||| ||||| | | Sbjct 1056 TAAAAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGAATACTTAATCTA 997 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGT 21957 | || | ||||||||| || |||||||| || ||||||| ||| ||||| | | ||| Sbjct 996 CGCCGAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAA 937 Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 ||||||| || ||| || || || |||||| ||| |||||| || || |||| | Sbjct 936 AGTTGAAAGTACCGAGAATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTG 877 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 | || | | ||| ||||| | ||||| || | ||| || || || |||| || |||| Sbjct 876 GGTAGATTAAGAAACCAGCAATAGCAGCTGCAATAGGTGCTGAATATGCAATAATAATCC 817 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGC 22137 | || ||| || | | | |||||||||||||| || ||||||||| | || | Sbjct 816 AAGGGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACAC 757 Query 22138 CAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 ||| | ||||| | || | || | | |||||||| || || | ||||||||||| Sbjct 756 CAAGTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAA 697 Query 22198 GTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 | | |||||||| |||||||| ||||| Sbjct 696 TAGATGTTGCTTCCCATATTGGGTAAAAGTG 666 >seq6213 Length=1415 Score = 210 bits (232), Expect = 6e-50 Identities = 518/795 (65%), Gaps = 37/795 (5%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 1141 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1082 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| |||||||| ||||| || || || | | | | | || | Sbjct 1081 GCCCGGTTAATAATATCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTACAGTT 1022 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 | || |||||||| || | |||| ||||||| || | || | | | ||| Sbjct 1021 TTATTGAAGTTGAACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACGTGAAC 962 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||| || |||||||| | | | |||||||| | || ||| | || || || Sbjct 961 CAAATACATATCACAGGCCAATCTGTTAAGAAGAAATGTAAACAACGAGGGTTGTTGAAA 902 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||| ||||| ||||| | || |||||||| || |||||||| | |||||| ||| | Sbjct 901 CTATCATATGAAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTATAATTT 842 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 |||||||||| ||| || ||||| | || || | | ||| || || || | Sbjct 841 TCTTCCTCTTAACCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTT 782 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | | || |||| | ||| |||||| || ||| | || || ||||| Sbjct 781 ATCAAACTAAAAGTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGAATACT 722 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 | || || || | ||||||||| || |||||||| || ||||||||| | ||||| || Sbjct 721 CTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGAATACG 662 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA---------- 22000 | ||| ||||||| || || || || || || ||||| ||||| |||| Sbjct 661 ATCATAAAGTTGAAAGTACCAGACATTCCTAAAAGCATACCATCAAAAAAGTTTCCTGCC 602 Query 22001 -------------------------AGAGC--CCTGTCCAAACGGATAAACAAGGAACAC 22033 | ||| ||| || | || || || | ||| || Sbjct 601 CGATTGGGTAGATCAAGAAATCAAAAAAGCTTCCTAGCCGATTGGGTAGACCAAGAAAAC 542 Query 22034 AGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAG 22093 |||| | || || || ||||| || || |||||| | ||| || | ||| ||| | Sbjct 541 AGCAATAATAGATGCCACGGGAGCTGAATATGCAACAGCAACCCAAGGACGCATACCTCG 482 Query 22094 TCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAA 22153 | | |||||||||||||| || ||||||||| | || |||| | ||||| | Sbjct 481 ATGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAGTGTAC 422 Query 22154 TACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCA 22213 || |||| | | ||||| || || || | ||||||||||| || |||||||| Sbjct 421 AACAATGAGCTCATAAGGACCACCATTATATAACCATTCATCAACATATGCTGCTTCCCA 362 Query 22214 AATTGGGTAGAAGTG 22228 ||||||| ||||| Sbjct 361 TATTGGGTGAAAGTG 347 >seq14731 Length=28268 Score = 187 bits (206), Expect = 7e-43 Identities = 235/323 (73%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533 ||||| || |||||||| || || || || |||||||| || || | |||||||| || Sbjct 20816 AGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCC 20875 Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGG 21593 ||||||| ||| | |||||| ||||| || || | || | | | | | | |||||| Sbjct 20876 CGGTTAATAATATAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTACAGATTGA 20935 Query 21594 TTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAA 21653 || |||||||| | || | |||||||||||| || | | | || | |||||| Sbjct 20936 TTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCGTGAACCAA 20995 Query 21654 ATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTA 21713 |||| || |||||||| || || | |||||| | | | ||| || || || | ||| Sbjct 20996 ATACTTATTACAGGCCAAGCTGCTAAGAAGAAACGTAAAGAACGAGAGTTGTTGAGACTA 21055 Query 21714 GCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCT 21773 ||||||| ||||| | | |||||||| || |||||| | |||||||| ||||| ||| Sbjct 21056 ACATATTGAAAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTATAAGTTTCT 21115 Query 21774 TCCTCTTGACCAAACTTGTAACC 21796 ||||||||||| || ||||||| Sbjct 21116 TCCTCTTGACCGAATCTGTAACC 21138 >seq21559 Length=2991 Score = 165 bits (182), Expect = 2e-36 Identities = 483/740 (65%), Gaps = 3/740 (0%) Strand=Plus/Minus Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||| ||||| | || |||||||| || |||||||| |||||||| ||||| ||||| Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||||||||| || |||| | | || || | | ||| || || || | || | Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCA-AATACGCCGG 21894 || || ||| | | |||||| || || ||| | | ||||| || | Sbjct 2505 ACTAGAAGTTCCCAAGGAATTATGCATAACACTAAATAAAGGAGCTGCTGAATACTCCAG 2446 Query 21895 CCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCA 21954 | || | | ||||||||| || |||||||| || | | || ||| ||||| | | || Sbjct 2445 CTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGAATCA 2386 Query 21955 TGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAA 22014 | ||||||| || | | | || | || |||||| ||||| |||| || || |||| Sbjct 2385 TAAAGTTGAAAGTACAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGACCAA 2326 Query 22015 ACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGA 22074 || || | | ||| | || ||| ||||| || |||||||| | || |||| | | Sbjct 2325 TTGGGTAGATTAAGAAAATAGTAGTAGCAGCTGCAACAGGAGCTGGATATGCAATAGTAA 2266 Query 22075 TCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGA 22134 |||| || | ||| || || | | |||||||||||||| | ||||| || | | Sbjct 2265 TCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAAGCTA 2206 Query 22135 CGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCAT 22194 | |||| | |||| | || | || | | || ||||| || || | ||| |||| Sbjct 2205 CACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAGTCAT 2146 Query 22195 CAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAA 22254 ||| | || |||||||| |||||||| || || | || | || | | | ||| Sbjct 2145 CAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATATGAA 2086 Query 22255 CGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGA 22314 | ||| | || || ||||| || || | || || ||| | ||||| | | Sbjct 2085 TAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCATGAA 2026 Query 22315 TTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA-ACAAGTTGTAGCG 22373 | ||||| || || || || | || ||| || || | |||||| |||| | || | Sbjct 2025 TACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACAAAATTTACGG 1966 Query 22374 GCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGTA 22433 ||| | | | || || || | || || |||||||| | |||||| || || | ||| Sbjct 1965 TCAATAAAGTA-GGGATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGTCAGTG 1907 Query 22434 GAGGTGACCCAGGAACAAAA 22453 |||| | ||| ||||||| Sbjct 1906 CAGGTTATCCACTAACAAAA 1887 Score = 107 bits (118), Expect = 6e-19 Identities = 206/305 (68%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||| | || |||||||| || || || || |||||||| ||||| | |||| ||| Sbjct 2927 GCTAGGCCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACCTCCATACCAAAGTTA 2868 Query 21531 GCACGGTTAAG---------AATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 | | ||||| ||| |||||||| ||||| || | || ||| | | Sbjct 2867 ACCCAGTTAACCCAGTTAATAATATCAGCCCAAGTGTTAATTATGCCACCTTCACTATCA 2808 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | | |||| || |||||| | | || | |||||||| || || | || | Sbjct 2807 ACTACATATTGATTGAAGTTGCACTCGTTTAGATTGAAAGCTATAGTGCTAATACCTAAA 2748 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 || | ||||| ||||||| ||| |||| | | | |||||||| | | ||| || Sbjct 2747 GCCGTGAACCAGATACCTATTACAAGCCAAGTTTCTATGAAGAAATGTAAAGAACGAGAG 2688 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||||||||||| || || | || |||||||| || |||||||| |||||| Sbjct 2687 TTGTTGAAACTAGCATATTGAAATATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 2628 Query 21762 TTGTA 21766 || || Sbjct 2627 TTATA 2623 >seq1192 Length=17806 Score = 145 bits (160), Expect = 2e-30 Identities = 230/328 (70%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| | |||||||| || || || || |||||| | || | | |||||||| Sbjct 2654 GCTAGGTCTGGAGGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTTA 2595 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || || |||| ||| |||||||| |||| || | || ||| | | | | |||| Sbjct 2594 GCCCGATTAATAATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGAT 2535 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 | || |||||||| | || | |||||||||||| || | || | | | ||| Sbjct 2534 TAATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAAC 2475 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 |||||||||| | |||| | || || | |||||||| | | ||| || || || || Sbjct 2474 CAAATACCTA-TATAGGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 2416 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||| |||||| || | || ||| |||| || |||||||| ||||| || ||||| Sbjct 2415 CTAACATATT---TTATCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAGTT 2359 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCAT 21798 |||||||||||||| || ||||||||| Sbjct 2358 TCTTCCTCTTGACCGAATATGTAACCAT 2331 Score = 86.0 bits (94), Expect = 2e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 22028 GAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCAT 22087 ||| |||||||| ||||| || |||||||| || || |||||| ||||| || | ||| Sbjct 2149 GAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCAT 2090 Query 22088 CCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 || || || | |||||||||||||| || ||||||||| Sbjct 2089 ACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 2050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146123972160660