Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11108 113 5e-20 seq25823 111 2e-19 seq26787 102 1e-16 seq13309 93.3 5e-14 seq2295 91.5 2e-13 seq23783 89.7 6e-13 seq19144 89.7 6e-13 seq28111 87.8 2e-12 >seq11108 Length=39206 Score = 113 bits (124), Expect = 5e-20 Identities = 229/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || || |||||| || ||||| | ||||||||| Sbjct 4998 CCGGGGACTGGGAAGACCCTTCTGGCTAAAGCCATTGCTGGTGAGGCTGGCGTCCCATTC 4939 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || | |||| | | | ||||| ||||||||||||||||| ||||| | || Sbjct 4938 TTTTCAATA-TCTGGCTCCGAATTTGTCGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGT 4880 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||||| ||||| ||| || || || || || || || || ||||||| || Sbjct 4879 ACGCGACCTCTTCAAAAAGGCGAAAGAGAACGCTCCGTGCATAGTGTTTGTTGATGAAAT 4820 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 ||||||||| || | |||| | | ||||| | || ||||||||||||||| || Sbjct 4819 TGATGCGGTTGGAAGGCAAAGAGGAGCTGGCATTGGCGGAGGAAATGACGAGAGAGAGCA 4760 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATTGT 175610 || | || || || | || |||||||| || || || | | ||||| |||||| Sbjct 4759 GACCCTGAACCAGCTTTTAACTGAGATGGACGGTTTCGAGGGTAACACTGGCGTCATTGT 4700 Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || |||| || ||||| | | || |||||||| Sbjct 4699 GG---TTGCAGCAACTAACAGAGCAGACATCCTTGA 4667 >seq25823 Length=50596 Score = 111 bits (122), Expect = 2e-19 Identities = 231/339 (68%), Gaps = 14/339 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| || || |||||| || ||||| | || |||||| Sbjct 44162 CCGGGGACTGGGAAGACCCTTCTGGCTAAAGCCATTGCTGGTGAGGCTGGCGTTCCATTC 44221 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | || | |||| | | | ||||| ||||||||||||||||| ||||| | || Sbjct 44222 TTTTCAATA-TCTGGCTCCGAATTTGTCGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGT 44280 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||||| ||||| ||| || || || || || || || || ||||||| || Sbjct 44281 ACGCGACCTCTTCAAAAAGGCGAAAGAGAACGCTCCGTGCATAGTGTTTGTTGATGAAAT 44340 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||||| || | |||| | | ||||| |||| || ||||||||||||||| Sbjct 44341 TGATGCGGTTGGAAGGCAAAGAGGAGCTGGCATTGGT---GGAGGAAATGACGAGAGAGA 44397 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CAT 175607 || || | || || || | || |||||||| || || || | | ||||| ||| Sbjct 44398 GCAGACCCTGAACCAGCTTTTAACTGAGATGGACGGTTTCGAGGGTAACACTGGCGTCAT 44457 Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||||| |||| || ||||| | | || |||||||| Sbjct 44458 TGTGG---TTGCAGCAACTAACAGAGCAGACATCCTTGA 44493 >seq26787 Length=21907 Score = 102 bits (112), Expect = 1e-16 Identities = 142/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCGCCGAG 65079 |||||||||| | ||||| |||||||| | ||| | | | ||||| || ||| Sbjct 16504 GAAGAAGGCGCAGTGGGCGTTGAAATGGATCGAC-----GGCGGGGAGTCCTTTGCTGAG 16450 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | ||||| || || || || || |||||||||||||| |||||| | ||| Sbjct 16449 CGGCTGATAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATT 16390 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| |||||||||| || | ||||| || || |||||| || || || || || Sbjct 16389 TTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCG 16330 Query 65200 CGAGATGAGGGTCTCCAC 65217 ||||| || ||||| ||| Sbjct 16329 CGAGACGAAGGTCTGCAC 16312 >seq13309 Length=30306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCGCCGAG 65079 |||||||||| | ||||| |||||||| | ||| | | | | ||| |||||| Sbjct 6164 GAAGAAGGCGCAGTGGGCGTTGAAATGGATCGAC-----GGCGGGGAGTGCTTTGCCGAG 6218 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 | || ||||||| || || || || || |||||||||||||| |||||| | ||| Sbjct 6219 AGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATT 6278 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| |||||||||| || | ||||| || | |||||| || || || || || Sbjct 6279 TTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGATCTCG 6338 Query 65200 CGAGATGAGGGTCTCCAC 65217 ||||| || || || ||| Sbjct 6339 CGAGACGAAGGCCTGCAC 6356 >seq2295 Length=9791 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 || |||| ||||| || ||| ||||| |||| ||||| |||| | || || | || | Sbjct 8039 CGTGACTTTGATTATGATTATTTTGGATTCAAGACCCTGGAGAGGTCATACCTATTAAAG 7980 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || || ||||| | ||| |||| | | || || Sbjct 7979 G-TCCAAGGAAAGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTTCTGTTGGAAT 7921 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| ||||||||||| | | | |||||| || ||||| ||| | ||| Sbjct 7920 CCACAAGGATGACATTGATTCGGCTATTAAAACATACCACTTCATGTCTCAACGATGGTT 7861 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| || | || ||||| ||||||||||| ||||||||||| ||| Sbjct 7860 TACTCATGCTTCTCCCACCCTTTTCAATGCTGGAACACCAAGACCACAG 7812 >seq23783 Length=11624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 246/374 (66%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 175222 GAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCC 175281 || ||| | ||| |||| ||||| |||||| | || || | ||| | || ||| Sbjct 5734 GAGCTTCAGGAGGTTGTTGATTTCCTCAAGAATCCGGATAAGTATACGGCTCTGGGAGCC 5675 Query 175282 AAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCC 175341 ||||| || ||| || || | || || || ||||| ||||| || || || Sbjct 5674 AAGATTCCGAAAGGATGTCTGCTGGTCGGGCCTCCGGGGACGGGTAAGACGCTTCTGGCG 5615 Query 175342 CGAGCCATCGCGGGTGAATCAA-ATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGT 175400 |||| |||| || || | | |||| ||| || ||| | || | | ||||| Sbjct 5614 AGAGCGGTCGCCGGAGAGGCGGGAACTCCC-TTCTTCTCTTGCGCGGCTTCGGAGTTTGT 5556 Query 175401 GGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA 175460 |||| ||||||| || || || || ||||| || ||| | ||||| | || | Sbjct 5555 GGAGCTGTTTGTGGGAGTTGGGGCTTCTAGGGTCCGGGATTTGTTTGAGAAGGCT----A 5500 Query 175461 AAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCA 175516 || ||| || || ||||| |||||||||||||||||||| || || | ||| | Sbjct 5499 AATCCAAGGCTCCTTGCATTGTGTTCATTGATGAGATTGATGCTGTAGGGAGGCAGAGAG 5440 Query 175517 GCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCG 175576 | |||||| | | |||||| || || ||||| || |||||||| || | || | Sbjct 5439 GAGCTGGTCTTGGTGGTGGAAATGATGAAAGGGAACAGACTATTAATCAGCTGTTGACTG 5380 Query 175577 AGATGGATGGCTTT 175590 | |||||||| ||| Sbjct 5379 AAATGGATGGATTT 5366 >seq19144 Length=21831 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186 ||||||| ||||| || ||| ||||| | || ||||| |||| | || || | | | Sbjct 17707 CGGGACTTTGATTATGATTATTTTGGATTTAAGACCCTAGAGAGGTCATACCTGTTGAAG 17766 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | | |||| || || ||||| | ||| |||| | |||| || Sbjct 17767 G-TCCAGGGAAAGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTTCTGTCGGGAT 17825 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| ||||||||||| | | | |||||| || ||||| ||| | ||| Sbjct 17826 CCACAAGGATGACATTGATTCAGCTATTAAAACATACCACTTCATGTCACAACGATGGTT 17885 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | ||| || | || ||||| || |||||||| |||||||||||||| Sbjct 17886 TACTCATGCTTCTCCCACCCTTTTTAATGCTGGAACACCAAGACCGCA 17933 >seq28111 Length=56930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992 |||| |||| |||| || || ||||| | |||||||| ||||| ||| |||||| | Sbjct 3902 AGGACTCTTGCAACAGAAAAAGCAACCAGCAAAATTTGGGGACAATAAAGTCCTCAAACC 3961 Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052 | ||||| |||||| | || ||| || | | |||||| |||||||||||| | |||| Sbjct 3962 TGTGCACTGAAATTATTGAATACTCAAGTCCGACTGAGACAGCTGTTTGCAATCTAGCAT 4021 Query 76053 CAATCGCCCTTCC 76065 | || || || || Sbjct 4022 CGATAGCACTGCC 4034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596208697763360