Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq11108 113 5e-20
seq25823 111 2e-19
seq26787 102 1e-16
seq13309 93.3 5e-14
seq2295 91.5 2e-13
seq23783 89.7 6e-13
seq19144 89.7 6e-13
seq28111 87.8 2e-12
>seq11108
Length=39206
Score = 113 bits (124), Expect = 5e-20
Identities = 229/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || || |||||||| || || |||||| || ||||| | |||||||||
Sbjct 4998 CCGGGGACTGGGAAGACCCTTCTGGCTAAAGCCATTGCTGGTGAGGCTGGCGTCCCATTC 4939
Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
| || | |||| | | | ||||| ||||||||||||||||| ||||| | ||
Sbjct 4938 TTTTCAATA-TCTGGCTCCGAATTTGTCGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGT 4880
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
||||| ||||| ||| || || || || || || || || ||||||| ||
Sbjct 4879 ACGCGACCTCTTCAAAAAGGCGAAAGAGAACGCTCCGTGCATAGTGTTTGTTGATGAAAT 4820
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553
||||||||| || | |||| | | ||||| | || ||||||||||||||| ||
Sbjct 4819 TGATGCGGTTGGAAGGCAAAGAGGAGCTGGCATTGGCGGAGGAAATGACGAGAGAGAGCA 4760
Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATTGT 175610
|| | || || || | || |||||||| || || || | | ||||| ||||||
Sbjct 4759 GACCCTGAACCAGCTTTTAACTGAGATGGACGGTTTCGAGGGTAACACTGGCGTCATTGT 4700
Query 175611 GGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
|| |||| || ||||| | | || ||||||||
Sbjct 4699 GG---TTGCAGCAACTAACAGAGCAGACATCCTTGA 4667
>seq25823
Length=50596
Score = 111 bits (122), Expect = 2e-19
Identities = 231/339 (68%), Gaps = 14/339 (4%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || || |||||||| || || |||||| || ||||| | || ||||||
Sbjct 44162 CCGGGGACTGGGAAGACCCTTCTGGCTAAAGCCATTGCTGGTGAGGCTGGCGTTCCATTC 44221
Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
| || | |||| | | | ||||| ||||||||||||||||| ||||| | ||
Sbjct 44222 TTTTCAATA-TCTGGCTCCGAATTTGTCGAGATGTTTGTTGGTGTCGGTGCTTCTCGAGT 44280
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
||||| ||||| ||| || || || || || || || || ||||||| ||
Sbjct 44281 ACGCGACCTCTTCAAAAAGGCGAAAGAGAACGCTCCGTGCATAGTGTTTGTTGATGAAAT 44340
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGA 175550
||||||||| || | |||| | | ||||| |||| || |||||||||||||||
Sbjct 44341 TGATGCGGTTGGAAGGCAAAGAGGAGCTGGCATTGGT---GGAGGAAATGACGAGAGAGA 44397
Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CAT 175607
|| || | || || || | || |||||||| || || || | | ||||| |||
Sbjct 44398 GCAGACCCTGAACCAGCTTTTAACTGAGATGGACGGTTTCGAGGGTAACACTGGCGTCAT 44457
Query 175608 TGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
||||| |||| || ||||| | | || ||||||||
Sbjct 44458 TGTGG---TTGCAGCAACTAACAGAGCAGACATCCTTGA 44493
>seq26787
Length=21907
Score = 102 bits (112), Expect = 1e-16
Identities = 142/198 (72%), Gaps = 7/198 (4%)
Strand=Plus/Minus
Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCGCCGAG 65079
|||||||||| | ||||| |||||||| | ||| | | | ||||| || |||
Sbjct 16504 GAAGAAGGCGCAGTGGGCGTTGAAATGGATCGAC-----GGCGGGGAGTCCTTTGCTGAG 16450
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
|| || | ||||| || || || || || |||||||||||||| |||||| | |||
Sbjct 16449 CGGCTGATAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATT 16390
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| ||| |||||||||| || | ||||| || || |||||| || || || || ||
Sbjct 16389 TTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCG 16330
Query 65200 CGAGATGAGGGTCTCCAC 65217
||||| || ||||| |||
Sbjct 16329 CGAGACGAAGGTCTGCAC 16312
>seq13309
Length=30306
Score = 93.3 bits (102), Expect = 5e-14
Identities = 140/198 (71%), Gaps = 7/198 (4%)
Strand=Plus/Plus
Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCGCCGAG 65079
|||||||||| | ||||| |||||||| | ||| | | | | ||| ||||||
Sbjct 6164 GAAGAAGGCGCAGTGGGCGTTGAAATGGATCGAC-----GGCGGGGAGTGCTTTGCCGAG 6218
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
| || ||||||| || || || || || |||||||||||||| |||||| | |||
Sbjct 6219 AGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCGATT 6278
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| ||| |||||||||| || | ||||| || | |||||| || || || || ||
Sbjct 6279 TTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGCTGATCTCG 6338
Query 65200 CGAGATGAGGGTCTCCAC 65217
||||| || || || |||
Sbjct 6339 CGAGACGAAGGCCTGCAC 6356
>seq2295
Length=9791
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
|| |||| ||||| || ||| ||||| |||| ||||| |||| | || || | || |
Sbjct 8039 CGTGACTTTGATTATGATTATTTTGGATTCAAGACCCTGGAGAGGTCATACCTATTAAAG 7980
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | | |||| || || ||||| | ||| |||| | | || ||
Sbjct 7979 G-TCCAAGGAAAGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTTCTGTTGGAAT 7921
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|||| ||| ||||||||||| | | | |||||| || ||||| ||| | |||
Sbjct 7920 CCACAAGGATGACATTGATTCGGCTATTAAAACATACCACTTCATGTCTCAACGATGGTT 7861
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355
| ||| || | || ||||| ||||||||||| ||||||||||| |||
Sbjct 7860 TACTCATGCTTCTCCCACCCTTTTCAATGCTGGAACACCAAGACCACAG 7812
>seq23783
Length=11624
Score = 89.7 bits (98), Expect = 6e-13
Identities = 246/374 (66%), Gaps = 10/374 (3%)
Strand=Plus/Minus
Query 175222 GAACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCC 175281
|| ||| | ||| |||| ||||| |||||| | || || | ||| | || |||
Sbjct 5734 GAGCTTCAGGAGGTTGTTGATTTCCTCAAGAATCCGGATAAGTATACGGCTCTGGGAGCC 5675
Query 175282 AAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCC 175341
||||| || ||| || || | || || || ||||| ||||| || || ||
Sbjct 5674 AAGATTCCGAAAGGATGTCTGCTGGTCGGGCCTCCGGGGACGGGTAAGACGCTTCTGGCG 5615
Query 175342 CGAGCCATCGCGGGTGAATCAA-ATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGT 175400
|||| |||| || || | | |||| ||| || ||| | || | | |||||
Sbjct 5614 AGAGCGGTCGCCGGAGAGGCGGGAACTCCC-TTCTTCTCTTGCGCGGCTTCGGAGTTTGT 5556
Query 175401 GGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA 175460
|||| ||||||| || || || || ||||| || ||| | ||||| | || |
Sbjct 5555 GGAGCTGTTTGTGGGAGTTGGGGCTTCTAGGGTCCGGGATTTGTTTGAGAAGGCT----A 5500
Query 175461 AAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCA 175516
|| ||| || || ||||| |||||||||||||||||||| || || | ||| |
Sbjct 5499 AATCCAAGGCTCCTTGCATTGTGTTCATTGATGAGATTGATGCTGTAGGGAGGCAGAGAG 5440
Query 175517 GCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCG 175576
| |||||| | | |||||| || || ||||| || |||||||| || | || |
Sbjct 5439 GAGCTGGTCTTGGTGGTGGAAATGATGAAAGGGAACAGACTATTAATCAGCTGTTGACTG 5380
Query 175577 AGATGGATGGCTTT 175590
| |||||||| |||
Sbjct 5379 AAATGGATGGATTT 5366
>seq19144
Length=21831
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 75186
||||||| ||||| || ||| ||||| | || ||||| |||| | || || | | |
Sbjct 17707 CGGGACTTTGATTATGATTATTTTGGATTTAAGACCCTAGAGAGGTCATACCTGTTGAAG 17766
Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246
| || | || | | | |||| || || ||||| | ||| |||| | |||| ||
Sbjct 17767 G-TCCAGGGAAAGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTTCTGTCGGGAT 17825
Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306
|||| ||| ||||||||||| | | | |||||| || ||||| ||| | |||
Sbjct 17826 CCACAAGGATGACATTGATTCAGCTATTAAAACATACCACTTCATGTCACAACGATGGTT 17885
Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354
| ||| || | || ||||| || |||||||| ||||||||||||||
Sbjct 17886 TACTCATGCTTCTCCCACCCTTTTTAATGCTGGAACACCAAGACCGCA 17933
>seq28111
Length=56930
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75933 AGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATC 75992
|||| |||| |||| || || ||||| | |||||||| ||||| ||| |||||| |
Sbjct 3902 AGGACTCTTGCAACAGAAAAAGCAACCAGCAAAATTTGGGGACAATAAAGTCCTCAAACC 3961
Query 75993 TTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCAT 76052
| ||||| |||||| | || ||| || | | |||||| |||||||||||| | ||||
Sbjct 3962 TGTGCACTGAAATTATTGAATACTCAAGTCCGACTGAGACAGCTGTTTGCAATCTAGCAT 4021
Query 76053 CAATCGCCCTTCC 76065
| || || || ||
Sbjct 4022 CGATAGCACTGCC 4034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596208697763360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |