Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 293 3e-74
seq6213 266 4e-66
seq21559 201 1e-46
seq14731 161 1e-34
seq1192 134 2e-26
seq6906 82.4 9e-11
>seq10156
Length=9543
Score = 293 bits (324), Expect = 3e-74
Identities = 594/873 (68%), Gaps = 9/873 (1%)
Strand=Plus/Minus
Query 7903 GGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAAT 7962
||||| || || ||||| |||||||||||| |||||||| ||||| | | | |||||
Sbjct 1410 GGGAAATTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCC-GATTAAT 1352
Query 7963 ACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTT 8021
| ||| |||| || ||| || ||| | | |||||| || |||| || |||||
Sbjct 1351 AATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAAGTT 1292
Query 8022 AAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATAC 8081
|||||||| ||||| || |||||||||| ||||| | || | | ||||| || |
Sbjct 1291 GAATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGCCATGA-CCAAATACCTCT 1233
Query 8082 AACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACT 8140
|| || | || || | |||||| || | | | | |||||| |||| | |||||
Sbjct 1232 TACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTA-GCATATC 1174
Query 8141 GGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTT 8200
| ||||| ||| ||||| || ||||||||||| | |||||| || || ||||| ||||
Sbjct 1173 GAAAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCTCTT 1114
Query 8201 GACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAG 8260
||| || ||| | | || ||| || | ||| || || ||||| || | | |
Sbjct 1113 AACCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAACTAA 1054
Query 8261 ATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCT--GCTAC 8318
| || || || ||||| ||||||||||| || | || |||| || |||| | ||||
Sbjct 1053 AAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGA--ATACTTAATCTAC 996
Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378
|| ||| || || || |||||||| ||||| |||| || ||||||| | ||| ||
Sbjct 995 GCCGAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAAA 936
Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438
||| || ||||| ||| |||| |||||| |||| ||| || || ||||||| |||
Sbjct 935 GTTGAAAGTACCGAGAATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGG 876
Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498
|| | |||||| | || | |||||| | | || || |||||| | | |||||
Sbjct 875 GTAGATTAAGAAACCAGCAATAGCAGCTGCAATAGGTGCTGAATATGCAATAATAATCCA 816
Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558
|| |||||| | | | | | ||||||| | |||||||||| || | ||
Sbjct 815 AGGGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 756
Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618
|| | ||||| | | || | || | | ||||| || ||||| ||||| ||||| |
Sbjct 755 AAGTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAAT 696
Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678
| | |||||||| || || || ||||| || || ||||| |||| ||| |
Sbjct 695 AGATGTTGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCCCCAGAAGTAAGAATAAT 636
Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACC 8738
|||||| | || || |||||||| || | | || || || | ||||||||||| |
Sbjct 635 GGCACCAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAAGTTCACGAATATC 576
Query 8739 GTCGATATCGACAGGTGGAGCAGCAATAAATGC 8771
| ||||| || | || | ||||| || ||
Sbjct 575 ATTAATATCTACTGAAGGGGTTGCAATGAAAGC 543
>seq6213
Length=1415
Score = 266 bits (294), Expect = 4e-66
Identities = 575/853 (67%), Gaps = 49/853 (6%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | |||
Sbjct 1141 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1082
Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008
|| | ||| ||||| ||| |||| || ||| | ||| | |||||| || |
Sbjct 1081 GCCCGGTTAATAATA--TCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTACAG 1024
Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068
|| || ||||| || ||| ||||| | ||||| |||| |||||| | ||| || |
Sbjct 1023 TTTTATTGAAGTTGAACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACGTGA 964
Query 8069 ACCAAACACATACAACTGGG-AATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT- 8126
|||||| ||||| || || ||| | | | |||||| || | || | | ||||||
Sbjct 963 ACCAAATACATATCACAGGCCAATCT-GTTAAGAAGAAATGTAAACAACGAGGGTTGTTG 905
Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186
|||| || |||| ||||| |||| ||||| || ||||||||||| | |||||||||
Sbjct 904 AAACTAT-CATATGAAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTATA 846
Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTC 8246
| ||||| |||| ||| || ||||| | || ||| || | ||| || || ||
Sbjct 845 ATTTTCTTCCTCTTAACCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 786
Query 8247 TCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306
|| || | | | | || || || |||| |||||| ||||||| || || || |||||
Sbjct 785 CCTTATCAAACTAAAAGTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGAA 726
Query 8307 CATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAA 8366
| | ||||| ||| ||| || || || |||||||| ||||| ||||| |||||||
Sbjct 725 TACTCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGAA 666
Query 8367 TACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACC 8426
||||| ||| ||||| || |||||||| || |||| | |||| |||||| | || | |
Sbjct 665 TACGATCATAAAGTTGAAAGTACCAGACATTCCTAAAAGCATACCATCA-AAAAAGTTTC 607
Query 8427 CTGACCAAATGGATATACTAAGAA--CA------CTGC---------------------G 8457
||| || | ||| || | ||||| || || | |
Sbjct 606 CTGCCCGATTGGGTAGATCAAGAAATCAAAAAAGCTTCCTAGCCGATTGGGTAGACCAAG 547
Query 8458 AAAGCAGC------AGAT---ACTGGAGCACTATATGCTACACAGATCCATGGTCTCATA 8508
||| |||| |||| || ||||| |||||| ||| | ||| || | ||||
Sbjct 546 AAAACAGCAATAATAGATGCCACGGGAGCTGAATATGCAACAGCAACCCAAGGACGCATA 487
Query 8509 CCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAG 8568
||| || | | ||||||| | |||||||||| || | |||| | |||
Sbjct 486 CCTCGATGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAG 427
Query 8569 TGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTA-ATGTGGCAGC 8627
|| | | || | || ||| ||||| || ||||| ||||| ||||| | || | || ||
Sbjct 426 TGTACAACAATGAGCTCATAAGGACCACCATTATATAACCATTCATCAACATAT-GCTGC 368
Query 8628 TTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGA 8687
|||||| || || | ||||| || | ||||| | |||| |||| | ||||||||
Sbjct 367 TTCCCATATTGGGTGAAAGTGCAAACATATAGCCGTAGAAGTAGGAATAATGGCACCAGA 308
Query 8688 GATGATGTTGTTT 8700
|| || || |||
Sbjct 307 AATAATATTATTT 295
>seq21559
Length=2991
Score = 201 bits (222), Expect = 1e-46
Identities = 491/740 (66%), Gaps = 3/740 (0%)
Strand=Plus/Minus
Query 8136 ATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTC 8195
||| || ||||| |||| ||||| || ||||||||||| ||||||||||| || |||||
Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566
Query 8196 TTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAG 8255
|||||||| || ||| | | || ||| || | ||| || || || || || |
Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506
Query 8256 AGAAGATGTAACTAAAGAACCGTGCATAGCACTGAA-GAGTGATCCACCGAACATACCTG 8314
| ||| || | || ||| |||||| |||| || | || | | ||| | || |
Sbjct 2505 ACTAGAAGTTCCCAAGGAATTATGCATAACACTAAATAAAGGAGCTGCTGAATACTCCAG 2446
Query 8315 CTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374
|||| || ||| || || || |||||||| |||| | || |||||||||| | ||
Sbjct 2445 CTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGAATCA 2386
Query 8375 TGAAGTTAAACGTACCAGAA-ATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433
| ||||| || ||| ||||| || ||| |||||| |||||| | || || ||||||
Sbjct 2385 TAAAGTTGAAAGTA-CAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGACCA 2327
Query 8434 AATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAG 8493
| ||| || | |||||| | | |||||| | || ||||| |||||| | |
Sbjct 2326 ATTGGGTAGATTAAGAAAATAGTAGTAGCAGCTGCAACAGGAGCTGGATATGCAATAGTA 2267
Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553
||||| || | |||||| | | | | | ||||||| | |||||| || ||
Sbjct 2266 ATCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAAGCT 2207
Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613
| |||| | |||| | | || | || ||| || || || ||||| ||||| |||
Sbjct 2206 ACACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAGTCA 2147
Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673
|| | | || |||||||| || || || || || || || |||| | ||| ||
Sbjct 2146 TCAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATATGA 2087
Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733
| | ||| | | || || |||||||| || | | || || || ||||||| ||
Sbjct 2086 ATAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCATGA 2027
Query 8734 ATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCA 8793
||||| || ||||| || || | || ||||| || || || ||||| | | |
Sbjct 2026 ATACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACAAAATTTACG 1967
Query 8794 GCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTA 8853
| || || ||| || || | ||| |||||||| || | |||||| | |||| ||
Sbjct 1966 GTCAATAAAGTAGGGATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGTCAGTG 1907
Query 8854 CTTGTAACCCACTCGCAAAA 8873
| || | ||||| |||||
Sbjct 1906 CAGGTTATCCACTAACAAAA 1887
>seq14731
Length=28268
Score = 161 bits (178), Expect = 1e-34
Identities = 237/329 (72%), Gaps = 10/329 (3%)
Strand=Plus/Plus
Query 7893 TAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGC 7952
|| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| ||
Sbjct 20815 TAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGC 20874
Query 7953 TCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
| ||| ||||| | | |||| || ||| | ||| | | |||||| || |||
Sbjct 20875 CCGGTTAATAATA--TAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTACAGAT 20932
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
|| || ||||| || | ||| ||||| || ||||| |||| |||| | | || || |||
Sbjct 20933 TGATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCGTGAAC 20992
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAA--GTGAAGACTTCTACTGTTGTT-A 8127
|||| || || || || | | || | |||||| || |||| | | |||||| |
Sbjct 20993 CAAATACTTATTACAGGCCAAGCTGCTAAGAAGAAACGTAAAGA--ACGAGAGTTGTTGA 21050
Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187
|| | |||| || ||||| ||| ||||| || ||||||||| | |||||||||||
Sbjct 21051 GACTA-ACATATTGAAAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTATAA 21109
Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACC 8216
|| ||||| |||||||| || | |||||
Sbjct 21110 GTTTCTTCCTCTTGACCGAATCTGTAACC 21138
>seq1192
Length=17806
Score = 134 bits (148), Expect = 2e-26
Identities = 232/330 (70%), Gaps = 8/330 (2%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| |||| |||||||| || ||||| | ||||||| |||||| || ||| | |||
Sbjct 2654 GCTAGGTCTGGAGGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTTA 2595
Query 7951 GCTCTGTTTAATACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009
|| | | |||||| ||| |||| | ||| || ||| | | |||||| || ||
Sbjct 2594 GCCC-GATTAATAATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGA 2536
Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069
|| || ||||| || | ||| ||||| || ||||| |||| |||||| | || || ||
Sbjct 2535 TTAATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAA 2476
Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128
||||| || || | || || | || | |||||| || | | | | |||||| ||
Sbjct 2475 CCAAATACCTATATA-GGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAA 2417
Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188
|| | |||| | | | |||| ||| | || ||||||||||| ||||| ||||| |
Sbjct 2416 ACTAA-CATATTTTA---TCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAG 2361
Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCAT 8218
| ||||| |||||||| || | |||||||
Sbjct 2360 TTTCTTCCTCTTGACCGAATATGTAACCAT 2331
>seq6906
Length=33569
Score = 82.4 bits (90), Expect = 9e-11
Identities = 113/154 (73%), Gaps = 8/154 (5%)
Strand=Plus/Plus
Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318
||| || || |||||||| |||||||||||||| || | | |||| |||| |||
Sbjct 25368 AGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGAAGTCCCCGA--ATAC--TCTAA 25423
Query 8319 CCCTGCC--ATATGGAAA--GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374
| |||| | ||| ||| || | ||||| ||||| |||| ||||||||||| | |
Sbjct 25424 CTATGCCTAACATGCAAAATGGGTACATAATGATGTTGTGCTAAGCTTGGAATACAATGA 25483
Query 8375 TGAAGTTAAACGTACCAGAAATACCTAGAGGCAT 8408
| | | |||| |||||||| || |||| ||||||
Sbjct 25484 TAAGGATAAAAGTACCAGAGATTCCTAAAGGCAT 25517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615489826342840
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