Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq10156 293 3e-74 seq6213 266 4e-66 seq21559 201 1e-46 seq14731 161 1e-34 seq1192 134 2e-26 seq6906 82.4 9e-11 >seq10156 Length=9543 Score = 293 bits (324), Expect = 3e-74 Identities = 594/873 (68%), Gaps = 9/873 (1%) Strand=Plus/Minus Query 7903 GGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTTTAAT 7962 ||||| || || ||||| |||||||||||| |||||||| ||||| | | | ||||| Sbjct 1410 GGGAAATTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCC-GATTAAT 1352 Query 7963 ACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGTT 8021 | ||| |||| || ||| || ||| | | |||||| || |||| || ||||| Sbjct 1351 AATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAAGTT 1292 Query 8022 AAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATAC 8081 |||||||| ||||| || |||||||||| ||||| | || | | ||||| || | Sbjct 1291 GAATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGCCATGA-CCAAATACCTCT 1233 Query 8082 AACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACT 8140 || || | || || | |||||| || | | | | |||||| |||| | ||||| Sbjct 1232 TACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTA-GCATATC 1174 Query 8141 GGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTT 8200 | ||||| ||| ||||| || ||||||||||| | |||||| || || ||||| |||| Sbjct 1173 GAAAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCTCTT 1114 Query 8201 GACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAG 8260 ||| || ||| | | || ||| || | ||| || || ||||| || | | | Sbjct 1113 AACCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAACTAA 1054 Query 8261 ATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCT--GCTAC 8318 | || || || ||||| ||||||||||| || | || |||| || |||| | |||| Sbjct 1053 AAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGA--ATACTTAATCTAC 996 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 || ||| || || || |||||||| ||||| |||| || ||||||| | ||| || Sbjct 995 GCCGAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAAA 936 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||| || ||||| ||| |||| |||||| |||| ||| || || ||||||| ||| Sbjct 935 GTTGAAAGTACCGAGAATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGG 876 Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498 || | |||||| | || | |||||| | | || || |||||| | | ||||| Sbjct 875 GTAGATTAAGAAACCAGCAATAGCAGCTGCAATAGGTGCTGAATATGCAATAATAATCCA 816 Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558 || |||||| | | | | | ||||||| | |||||||||| || | || Sbjct 815 AGGGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACC 756 Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618 || | ||||| | | || | || | | ||||| || ||||| ||||| ||||| | Sbjct 755 AAGTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAAT 696 Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678 | | |||||||| || || || ||||| || || ||||| |||| ||| | Sbjct 695 AGATGTTGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCCCCAGAAGTAAGAATAAT 636 Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACC 8738 |||||| | || || |||||||| || | | || || || | ||||||||||| | Sbjct 635 GGCACCAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAAGTTCACGAATATC 576 Query 8739 GTCGATATCGACAGGTGGAGCAGCAATAAATGC 8771 | ||||| || | || | ||||| || || Sbjct 575 ATTAATATCTACTGAAGGGGTTGCAATGAAAGC 543 >seq6213 Length=1415 Score = 266 bits (294), Expect = 4e-66 Identities = 575/853 (67%), Gaps = 49/853 (6%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 1141 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1082 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | ||| ||||| ||| |||| || ||| | ||| | |||||| || | Sbjct 1081 GCCCGGTTAATAATA--TCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTACAG 1024 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTA 8068 || || ||||| || ||| ||||| | ||||| |||| |||||| | ||| || | Sbjct 1023 TTTTATTGAAGTTGAACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACGTGA 964 Query 8069 ACCAAACACATACAACTGGG-AATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT- 8126 |||||| ||||| || || ||| | | | |||||| || | || | | |||||| Sbjct 963 ACCAAATACATATCACAGGCCAATCT-GTTAAGAAGAAATGTAAACAACGAGGGTTGTTG 905 Query 8127 AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATA 8186 |||| || |||| ||||| |||| ||||| || ||||||||||| | ||||||||| Sbjct 904 AAACTAT-CATATGAAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTATA 846 Query 8187 GGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTC 8246 | ||||| |||| ||| || ||||| | || ||| || | ||| || || || Sbjct 845 ATTTTCTTCCTCTTAACCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 786 Query 8247 TCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAA 8306 || || | | | | || || || |||| |||||| ||||||| || || || ||||| Sbjct 785 CCTTATCAAACTAAAAGTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGAA 726 Query 8307 CATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAA 8366 | | ||||| ||| ||| || || || |||||||| ||||| ||||| ||||||| Sbjct 725 TACTCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGAA 666 Query 8367 TACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACC 8426 ||||| ||| ||||| || |||||||| || |||| | |||| |||||| | || | | Sbjct 665 TACGATCATAAAGTTGAAAGTACCAGACATTCCTAAAAGCATACCATCA-AAAAAGTTTC 607 Query 8427 CTGACCAAATGGATATACTAAGAA--CA------CTGC---------------------G 8457 ||| || | ||| || | ||||| || || | | Sbjct 606 CTGCCCGATTGGGTAGATCAAGAAATCAAAAAAGCTTCCTAGCCGATTGGGTAGACCAAG 547 Query 8458 AAAGCAGC------AGAT---ACTGGAGCACTATATGCTACACAGATCCATGGTCTCATA 8508 ||| |||| |||| || ||||| |||||| ||| | ||| || | |||| Sbjct 546 AAAACAGCAATAATAGATGCCACGGGAGCTGAATATGCAACAGCAACCCAAGGACGCATA 487 Query 8509 CCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAG 8568 ||| || | | ||||||| | |||||||||| || | |||| | ||| Sbjct 486 CCTCGATGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAG 427 Query 8569 TGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTA-ATGTGGCAGC 8627 || | | || | || ||| ||||| || ||||| ||||| ||||| | || | || || Sbjct 426 TGTACAACAATGAGCTCATAAGGACCACCATTATATAACCATTCATCAACATAT-GCTGC 368 Query 8628 TTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGA 8687 |||||| || || | ||||| || | ||||| | |||| |||| | |||||||| Sbjct 367 TTCCCATATTGGGTGAAAGTGCAAACATATAGCCGTAGAAGTAGGAATAATGGCACCAGA 308 Query 8688 GATGATGTTGTTT 8700 || || || ||| Sbjct 307 AATAATATTATTT 295 >seq21559 Length=2991 Score = 201 bits (222), Expect = 1e-46 Identities = 491/740 (66%), Gaps = 3/740 (0%) Strand=Plus/Minus Query 8136 ATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTC 8195 ||| || ||||| |||| ||||| || ||||||||||| ||||||||||| || ||||| Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566 Query 8196 TTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAG 8255 |||||||| || ||| | | || ||| || | ||| || || || || || | Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506 Query 8256 AGAAGATGTAACTAAAGAACCGTGCATAGCACTGAA-GAGTGATCCACCGAACATACCTG 8314 | ||| || | || ||| |||||| |||| || | || | | ||| | || | Sbjct 2505 ACTAGAAGTTCCCAAGGAATTATGCATAACACTAAATAAAGGAGCTGCTGAATACTCCAG 2446 Query 8315 CTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374 |||| || ||| || || || |||||||| |||| | || |||||||||| | || Sbjct 2445 CTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGAATCA 2386 Query 8375 TGAAGTTAAACGTACCAGAA-ATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCA 8433 | ||||| || ||| ||||| || ||| |||||| |||||| | || || |||||| Sbjct 2385 TAAAGTTGAAAGTA-CAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGACCA 2327 Query 8434 AATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAG 8493 | ||| || | |||||| | | |||||| | || ||||| |||||| | | Sbjct 2326 ATTGGGTAGATTAAGAAAATAGTAGTAGCAGCTGCAACAGGAGCTGGATATGCAATAGTA 2267 Query 8494 ATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAA 8553 ||||| || | |||||| | | | | | ||||||| | |||||| || || Sbjct 2266 ATCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAAGCT 2207 Query 8554 ATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCA 8613 | |||| | |||| | | || | || ||| || || || ||||| ||||| ||| Sbjct 2206 ACACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAGTCA 2147 Query 8614 TCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGA 8673 || | | || |||||||| || || || || || || || |||| | ||| || Sbjct 2146 TCAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATATGA 2087 Query 8674 ACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGA 8733 | | ||| | | || || |||||||| || | | || || || ||||||| || Sbjct 2086 ATAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCATGA 2027 Query 8734 ATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCA 8793 ||||| || ||||| || || | || ||||| || || || ||||| | | | Sbjct 2026 ATACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACAAAATTTACG 1967 Query 8794 GCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTA 8853 | || || ||| || || | ||| |||||||| || | |||||| | |||| || Sbjct 1966 GTCAATAAAGTAGGGATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGTCAGTG 1907 Query 8854 CTTGTAACCCACTCGCAAAA 8873 | || | ||||| ||||| Sbjct 1906 CAGGTTATCCACTAACAAAA 1887 >seq14731 Length=28268 Score = 161 bits (178), Expect = 1e-34 Identities = 237/329 (72%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 7893 TAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGC 7952 || ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| || Sbjct 20815 TAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGC 20874 Query 7953 TCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 | ||| ||||| | | |||| || ||| | ||| | | |||||| || ||| Sbjct 20875 CCGGTTAATAATA--TAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTACAGAT 20932 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 || || ||||| || | ||| ||||| || ||||| |||| |||| | | || || ||| Sbjct 20933 TGATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCGTGAAC 20992 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAA--GTGAAGACTTCTACTGTTGTT-A 8127 |||| || || || || | | || | |||||| || |||| | | |||||| | Sbjct 20993 CAAATACTTATTACAGGCCAAGCTGCTAAGAAGAAACGTAAAGA--ACGAGAGTTGTTGA 21050 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 || | |||| || ||||| ||| ||||| || ||||||||| | ||||||||||| Sbjct 21051 GACTA-ACATATTGAAAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTATAA 21109 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACC 8216 || ||||| |||||||| || | ||||| Sbjct 21110 GTTTCTTCCTCTTGACCGAATCTGTAACC 21138 >seq1192 Length=17806 Score = 134 bits (148), Expect = 2e-26 Identities = 232/330 (70%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| |||||||| || ||||| | ||||||| |||||| || ||| | ||| Sbjct 2654 GCTAGGTCTGGAGGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTTA 2595 Query 7951 GCTCTGTTTAATACG-TCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || | | |||||| ||| |||| | ||| || ||| | | |||||| || || Sbjct 2594 GCCC-GATTAATAATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGA 2536 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 || || ||||| || | ||| ||||| || ||||| |||| |||||| | || || || Sbjct 2535 TTAATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAA 2476 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AA 8128 ||||| || || | || || | || | |||||| || | | | | |||||| || Sbjct 2475 CCAAATACCTATATA-GGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAA 2417 Query 8129 ACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGG 8188 || | |||| | | | |||| ||| | || ||||||||||| ||||| ||||| | Sbjct 2416 ACTAA-CATATTTTA---TCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAG 2361 Query 8189 TCTCTTCTTCTTGACCAAACTTATAACCAT 8218 | ||||| |||||||| || | ||||||| Sbjct 2360 TTTCTTCCTCTTGACCGAATATGTAACCAT 2331 >seq6906 Length=33569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/154 (73%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| || || |||||||| |||||||||||||| || | | |||| |||| ||| Sbjct 25368 AGAAGTTACCAAAGAACCATGCATAGCACTGAATAGGAAGTCCCCGA--ATAC--TCTAA 25423 Query 8319 CCCTGCC--ATATGGAAA--GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACA 8374 | |||| | ||| ||| || | ||||| ||||| |||| ||||||||||| | | Sbjct 25424 CTATGCCTAACATGCAAAATGGGTACATAATGATGTTGTGCTAAGCTTGGAATACAATGA 25483 Query 8375 TGAAGTTAAACGTACCAGAAATACCTAGAGGCAT 8408 | | | |||| |||||||| || |||| |||||| Sbjct 25484 TAAGGATAAAAGTACCAGAGATTCCTAAAGGCAT 25517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615489826342840