Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq10156 277 5e-70 seq6213 210 6e-50 seq14731 187 7e-43 seq21559 165 2e-36 seq1192 145 2e-30 >seq10156 Length=9543 Score = 277 bits (306), Expect = 5e-70 Identities = 513/751 (68%), Gaps = 5/751 (1%) Strand=Plus/Plus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| |||||||| |||||||| | | ||||||||||| | || || |||||||| Sbjct 666 CACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCGGTCCT 725 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | | || | || | ||||| | |||| || | ||||||||| || |||||| Sbjct 726 TCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 785 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 |||||||| | | | || ||| || ||||| || |||| || || || ||| | Sbjct 786 GAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCACCTATT 845 Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCT 41698 || ||||| | ||||| ||| | | || || |||| || || |||||| ||| | Sbjct 846 GCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAATGGT 905 Query 41699 ATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAAT 41758 ||||| || || || ||| || ||||||| ||| | | ||||| ||| ||||||| Sbjct 906 ATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTTAGCACAAC 965 Query 41759 ATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTC 41818 || |||||||| || ||||||||| | || || | ||||| |||| || || Sbjct 966 ATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGCTCCTTATTT 1025 Query 41819 TCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTT 41878 ||||||||| ||| | |||| || | | || | || || || ||| | | Sbjct 1026 AGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCACAGAAAATGAA 1085 Query 41879 TCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCT 41938 || || | | |||| || ||| |||||||||| ||||| |||||| | |||||| Sbjct 1086 TCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTATAGCTGCT 1145 Query 41939 CACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTT 41998 || || |||||||| | | ||||| | ||||||||| || || || || ||| | | Sbjct 1146 CATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCGTTCTTTA 1205 Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGT-- 42056 |||||||| | || | |||||||| ||||||||||| | |||| || | Sbjct 1206 CATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGT---CATGGCTTTAAGTATTA 1262 Query 42057 CTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATG 42116 || |||||||||||| | || || |||||||| || |||| | | | | | ||| | Sbjct 1263 GCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGATAGTGAAG 1322 Query 42117 GACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGA 42176 | | | || ||||| |||||||| ||| |||| || | ||| |||| | ||||| | Sbjct 1323 GTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATGGAGGTTA 1382 Query 42177 TGCATGAGCGGAACGCACACAACTTCCCGCT 42207 ||||||| | || || || || ||||| || Sbjct 1383 TGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 210 bits (232), Expect = 6e-50 Identities = 518/795 (65%), Gaps = 37/795 (5%) Strand=Plus/Plus Query 41459 CACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCA 41518 ||||| ||||||| |||||||| || ||||||||||| | || || || ||||| Sbjct 347 CACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCT 406 Query 41519 TTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGG 41578 | | |||| || | ||||| | |||| || | ||||||||| || |||||| Sbjct 407 TATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 466 Query 41579 GAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTC 41638 |||||||| | | | ||| ||| | || ||| | |||||| || || ||||| || Sbjct 467 GAACTTAGTTTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTG 526 Query 41639 GCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGG--GCTCT---------- 41686 || || | |||||| ||| | || || || | || ||| ||| | Sbjct 527 GCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCT 586 Query 41687 -------------------------TTTTCTGATGCTATGCCCTTGGGGATATCCGGCAC 41721 |||| ||||| ||||| || || || || || || Sbjct 587 TGATCTACCCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTAC 646 Query 41722 CTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACAT 41781 ||||||| ||| | || ||||| | ||||||||| || |||||||| || |||||||| Sbjct 647 TTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACAT 706 Query 41782 GCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGT 41841 | | || || || | ||||| || || | ||| || |||||| ||| | |||| Sbjct 707 GTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGT 766 Query 41842 CACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTT 41901 || | | || | || || || ||| | | || || | ||||| || Sbjct 767 AACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATT 826 Query 41902 TGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTAT 41961 ||| |||||||||| | ||| |||||| | |||||||| || |||||||| || | || Sbjct 827 CGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGAT 886 Query 41962 CTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCC 42021 ||| ||||| ||| || || || | ||| || | |||||||| | | | ||||| Sbjct 887 CTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCC 946 Query 42022 TGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGG 42081 ||| || |||||||||| | | | || | || ||||||| |||| | || Sbjct 947 TGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAA 1006 Query 42082 TTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGA 42141 |||||||| || || || | | | | | || || || ||||| |||||||| Sbjct 1007 GTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCTGA 1066 Query 42142 CATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTT 42201 ||| ||||||| || |||||||| | || || |||||||| || || || || ||||| Sbjct 1067 TATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 1126 Query 42202 CCCGCTTGACCTTGC 42216 ||| || ||||| || Sbjct 1127 CCCTCTAGACCTAGC 1141 >seq14731 Length=28268 Score = 187 bits (206), Expect = 7e-43 Identities = 235/323 (73%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||||||||| ||||| |||||||| | |||||| || |||||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || | | ||||| ||||||| ||| | || || || ||| | | | |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 || || |||||||| || |||||||||| | || | | | || ||||||||| Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 ||| | || | |||||||| || |||||| | | | | | | || | || || ||| Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 || |||||| | ||| ||||||| || |||||||| | || || |||||||| || || Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 42191 GCACACAACTTCCCGCTTGACCT 42213 || || |||||||| || ||||| Sbjct 20838 GCTCATAACTTCCCTCTAGACCT 20816 >seq21559 Length=2991 Score = 165 bits (182), Expect = 2e-36 Identities = 483/740 (65%), Gaps = 3/740 (0%) Strand=Plus/Plus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 ||||||| ||| | |||| ||| | || || |||||| | |||||||| || || | Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946 Query 41294 ATGATTCCGTGCCTCCTTGCCGCTACAACTTGT-TTTATTATCGCCTTTGTTGGCGCACC 41352 || || || | | | ||| | || | |||| |||||| | || || ||| || | Sbjct 1947 ATAATCCC-TACTTTATTGACCGTAAATTTTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || | ||||| | ||| || || | || || ||||| Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || | ||| | ||| | | | || | || | || || |||||||| Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 |||||||| || | ||||||| ||| | || || ||||| || | | || | || Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | |||| | |||| || | || ||||| | |||||||||||||| | | Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| | |||| || | |||||||| || ||||| ||| | Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 | | ||| | | || || |||| || || |||| ||||| |||||| || | || Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 | | | || ||||||| ||| | | ||||| ||| || | | || |||||||| || Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATT-TGGTGGGAGTTTGTTCTCTGCTATGCACG 41831 ||||||||| | | || || || ||||| | | ||| || || |||||| Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485 Query 41832 GTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATG 41891 | | ||| || || | || | || || || ||| | | || || | | Sbjct 2486 ATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAG 2545 Query 41892 GTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTG 41951 |||| || |||||||||||||| ||||| |||||||| |||||||| || ||||||| Sbjct 2546 ATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 2605 Query 41952 GTCGGCTTATCTTCCAATAT 41971 | || | ||||| |||||| Sbjct 2606 GCCGATTGATCTTTCAATAT 2625 Score = 107 bits (118), Expect = 6e-19 Identities = 206/305 (68%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 41921 TACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTT 41980 || |||||||| |||||||| || |||||||| || | || || ||||||||||| || Sbjct 2623 TATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATATTTCAATATGCTAGTTTC 2682 Query 41981 AATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTT 42040 || || || ||| | | |||||||| | | | |||| ||| ||||||| ||||| Sbjct 2683 AACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGGTTC 2742 Query 42041 GCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCT 42100 | || | || | || || |||||||| | || | | |||||| || |||| | Sbjct 2743 ACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAATAT 2802 Query 42101 CTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATT---------CTTAAC 42151 | | | | ||| || | || ||||| |||||||| ||| ||||| Sbjct 2803 GTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATTAACTGGGTTAAC 2862 Query 42152 CGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 | | ||| |||| | ||||| |||||||| || || || || |||||||| || | | Sbjct 2863 TGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGGC 2922 Query 42212 CTTGC 42216 || || Sbjct 2923 CTAGC 2927 >seq1192 Length=17806 Score = 145 bits (160), Expect = 2e-30 Identities = 230/328 (70%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 41889 ATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATT 41948 ||||||||| || |||||||||||||| ||||| || ||||| |||||||| || |||| Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 41949 TTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTC 42008 ||| || | || |||||| ||| || || || || ||| | | |||||||| Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 42009 TTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTT 42068 | || || | |||| | ||||||||||||| | | | || | || ||||||| Sbjct 2448 TAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 42069 TCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCA 42128 ||||| | || | |||||||| || ||||| | | | | ||| || | || | Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566 Query 42129 ACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGA 42188 ||| |||||||| ||| |||| || || |||||||| | | || | |||||| || | Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626 Query 42189 ACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || |||||||| | ||||| || Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGC 2654 Score = 86.0 bits (94), Expect = 2e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| || |||||||||||||| | || || || ||| | || ||||| ||| Sbjct 2050 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 2109 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTC 41659 ||| || || |||||||| || ||||| |||||||| ||| Sbjct 2110 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146130368482488