Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq10156 295 2e-75 seq21559 223 1e-53 seq6213 210 6e-50 seq14731 163 8e-36 seq1192 149 2e-31 >seq10156 Length=9543 Score = 295 bits (326), Expect = 2e-75 Identities = 599/883 (68%), Gaps = 5/883 (1%) Strand=Plus/Plus Query 42382 TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTC 42441 ||| || | ||||||||||| ||||| | ||||| ||| ||| |||||||||| | | Sbjct 534 TTTGTTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATT 593 Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 | ||| ||||| || || || ||||| || || | ||||||| | | | || | Sbjct 594 TTTGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGG 653 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 || || || | || || || | || |||||||| | | |||| |||||| | || Sbjct 654 GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATAT 713 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTG 42621 |||||||| |||| | |||| | || | ||||| | | ||| | | |||| || Sbjct 714 AATGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATG 773 Query 42622 GGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTAC 42681 || || || ||||||||| | | | | || ||| || ||||| || |||| || Sbjct 774 GGTCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATAT 833 Query 42682 TCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCT 42741 || || ||| | || || || | ||| | ||| | |||| ||| |||| ||||| Sbjct 834 TCAGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGC 893 Query 42742 TTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAG 42801 ||||| |||| |||||| | || ||| |||||| |||||||| ||| | | ||||| Sbjct 894 TTTTCTAATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCAT 953 Query 42802 GCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGT 42861 ||| | || ||||| |||||||| || || || ||| | || || | ||||| || Sbjct 954 GCTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGT 1013 Query 42862 GGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTG-TGCGTGAAAC 42920 || || || || |||||||||||| |||| | || || ||| | | ||||| Sbjct 1014 GGCTCCTTATTTAGTGCTATGCATGGT-TCCTTGGTAACTTTTAGTTTGATAAGAGAAAC 1072 Query 42921 GACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAA 42980 || ||||| ||| ||| | | ||| |||||| ||||||| || ||||| || Sbjct 1073 CACAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAA 1132 Query 42981 CATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATA 43039 ||| | || || |||||||| ||||| | | ||||| | |||||| | |||| || | Sbjct 1133 TATTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGC-TAGTTTCAACA 1191 Query 43040 ATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTT 43099 | ||| ||||| || ||||| | || ||||||| || || |||||| ||| Sbjct 1192 ACTCTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGG 1250 Query 43100 CTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTG 43159 || | | | || || ||||| || ||| | || || || ||||| || |||| | | Sbjct 1251 CTTTAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAG 1310 Query 43160 TTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTG 43219 |||||| | | || | || ||||||||||||||| | ||||| | ||| ||| Sbjct 1311 TTGATAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTG 1370 Query 43220 GCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCT 43262 | | ||||| ||||| || | ||||| ||||| ||||| || Sbjct 1371 GTATGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq21559 Length=2991 Score = 223 bits (246), Expect = 1e-53 Identities = 501/749 (67%), Gaps = 3/749 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||| | ||| | || | ||| |||| || |||||| |||| |||||| Sbjct 1878 TGGGGTCGCTTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTT 1937 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||| || || | | | | | || ||| |||||||| |||||||| Sbjct 1938 GGTGTTTTGATAATCCCTACTTTATTGACCG-TAAATTTTGTATTTATTGTAGCTTTCAT 1996 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||| || |||| ||||| |||||||| |||| ||||||| | | ||| ||||| || || Sbjct 1997 TGCAGCGTCTCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTA 2056 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || | | |||| | | | || | | || | || | ||||| Sbjct 2057 CGGAAACAATATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTT 2116 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | |||| || ||| | || |||||||| |||||| | Sbjct 2117 TTACCCAATATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGA 2176 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||| | | ||| | | || |||| | || |||||||| Sbjct 2177 GCTAATTGTTCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACT 2236 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | | | || || ||| | || ||||| | |||| || | || ||||| || || Sbjct 2237 TAGTTTCAGTCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGC 2296 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||| | | ||| | |||| ||| |||| ||||| |||| ||||| ||||| Sbjct 2297 TGCTACTACTATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCC 2356 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | | || | | |||| |||||||| ||| | | ||||| ||| | | |||| || Sbjct 2357 TTTAGAAATCTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCT 2416 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGT-CGTTGTTCTCAG 42877 |||||| || || || ||| | | || || || ||||| | | | | || || | Sbjct 2417 TATGCACCCATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTG 2476 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||| | | | || ||| | | | | ||||| || ||||||||| Sbjct 2477 TTATGCATAATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTG 2536 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | | ||| |||||||||||||| || |||||||| ||||| || || |||| Sbjct 2537 TTAATGAAGATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATG 2596 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATAT 43026 |||| ||||| || | ||||| |||||| Sbjct 2597 GTTATTTTGGCCGATTGATCTTTCAATAT 2625 >seq6213 Length=1415 Score = 210 bits (232), Expect = 6e-50 Identities = 389/563 (69%), Gaps = 6/563 (1%) Strand=Plus/Plus Query 42712 TTCCTTG-TCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTC 42770 || |||| |||| ||| | ||||| | |||||| ||||| |||| | | || || || Sbjct 582 TTTCTTGATCTACCCAATCGGGCAGGAAACTTTTTT-GATGGTATGCTTTTAGGAATGTC 640 Query 42771 CGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTT 42830 ||||| |||||||| ||| | || ||||| | ||| || ||||| |||||||| || || Sbjct 641 TGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATT 700 Query 42831 CCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAG 42890 || ||| | || || || | ||||| || || || | ||| | |||||||||| Sbjct 701 TCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTT- 759 Query 42891 TCTTGTCACCTCTTCTCTTG-TGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCT 42949 ||||| | || || ||| | | ||||| || ||||| ||| ||| | || | Sbjct 760 TCTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 819 Query 42950 ACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGAC 43009 | |||||| ||||||| || | |||||| ||| | || || |||||||| ||||| | Sbjct 820 AATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCC 879 Query 43010 GGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCC 43068 | | ||||| ||||| | |||| || || ||| | ||| || ||||| | | Sbjct 880 GATTGATCTTTTCATATGA-TAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACA 938 Query 43069 GCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAAC 43128 | |||||| || | | ||||||||||| ||| | || | || |||||||| | ||| Sbjct 939 GATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAAC 998 Query 43129 TTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACT 43188 | || || ||||| || || | | ||||||| || | || || ||| Sbjct 999 CTAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACT 1058 Query 43189 TGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCA 43248 |||||||||||| | || || || |||||||| | || || ||||| || || ||||| Sbjct 1059 TGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 1118 Query 43249 CATAACTTCCCGCTTGATCTTGC 43271 ||||||||||| || || || || Sbjct 1119 CATAACTTCCCTCTAGACCTAGC 1141 >seq14731 Length=28268 Score = 163 bits (180), Expect = 8e-36 Identities = 232/324 (72%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 42946 GGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTT 43005 || |||| |||||||||||||| || |||||||| ||||| | || |||||||| ||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 43006 GGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCT 43064 || | | ||||| ||||||| | || | || || ||| ||||| | ||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGT-TAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTT 21020 Query 43065 TGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTT 43124 || |||||||| || | | ||||||||||| || | | | || |||||||| || Sbjct 21019 AGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTT 20960 Query 43125 TAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCC 43184 ||| | || | || ||||| || ||||| | |||||| ||| || || || Sbjct 20959 CAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAA 20900 Query 43185 TACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAA 43244 ||||||||| ||||| | || || || |||||||| | || || ||||| || || || Sbjct 20899 CACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 20840 Query 43245 TGCACATAACTTCCCGCTTGATCT 43268 ||| ||||||||||| || || || Sbjct 20839 TGCTCATAACTTCCCTCTAGACCT 20816 >seq1192 Length=17806 Score = 149 bits (164), Expect = 2e-31 Identities = 230/322 (71%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 42941 ATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTT 43000 || |||| |||| |||||||||||||| || |||||||||||||| || || ||||||| Sbjct 2328 ATGATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTT 2387 Query 43001 ACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTC 43059 | | ||| || | | | |||||| | |||| || || ||| ||||| || ||| Sbjct 2388 ATTCTGGCCGATTGA---TAAAATATG-TTAGTTTCAACAACTCTCGTTCTTTACATTTC 2443 Query 43060 TTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATG 43119 || | || |||| | || | | || ||||||||||| || | || | || |||||| Sbjct 2444 TTCTTAGCAGCTTTG-CCTATATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATG 2502 Query 43120 GCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG-- 43177 || || ||| | || | || ||||| || |||| | ||||||||| ||| || Sbjct 2503 GCTTTCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAAT--GAAGGTTGCA 2560 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || | ||||||||||||| | ||||| || |||||||| | | || | ||| | Sbjct 2561 TAATTAACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATG 2620 Query 43238 AGCGGAATGCACATAACTTCCC 43259 | || ||||| ||||||||||| Sbjct 2621 AACGTAATGCTCATAACTTCCC 2642 Score = 98.7 bits (108), Expect = 3e-16 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 42316 AACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACC 42375 ||| | |||||| |||| ||||||||||| ||||||| | | | | | || | | Sbjct 1809 AACTGCCTTTATATTGGATGGTTTGGTGTCTTGATGATCTCTACTTTATTGACCGC-AAC 1867 Query 42376 ACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGA 42434 |||| |||||| | ||||| |||| | |||||| |||| |||||||| |||| ||| Sbjct 1868 TTCTGTATTTATTATAGCTTTAATTGTAGTCCCTCCAATAGATATTGATGGTATTCATGA 1927 Query 42435 ACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGC 42482 |||||| ||| | ||||| || ||||| || || || || ||| |||| Sbjct 1928 ACCTGTTTCTAGATCTCTACTTTATGGAAATAATATTATTTCTAGTGC 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143450309636556