Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq10156 259 1e-64 seq6213 215 2e-51 seq21559 179 1e-40 seq14731 158 4e-34 seq1192 132 1e-26 >seq10156 Length=9543 Score = 259 bits (286), Expect = 1e-64 Identities = 585/872 (67%), Gaps = 8/872 (1%) Strand=Plus/Minus Query 25889 GGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAAT 25948 ||||| |||||||||||| | || |||||||| || | || | |||| | || || | Sbjct 1409 GGAAA-TTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCCGATTAATA 1351 Query 25949 ACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTA 26008 | ||||||||| || ||||| || | | ||| ||||| | || || ||||| Sbjct 1350 ATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAAGTTG 1291 Query 26009 AAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACA 26068 || || |||||||| || |||||||||| |||| | || | | ||| || || Sbjct 1290 AATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGCCATGA-CCAAATACCTCTT 1232 Query 26069 ACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGA 26128 || |||||||| || | |||||||| | |||||| ||| || ||||| ||||| || Sbjct 1231 ACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATCGA 1172 Query 26129 AAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGC 26188 || || ||| ||||| || || || ||||| | |||||| || || ||||| |||| Sbjct 1171 AAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCTCTTAA 1112 Query 26189 CCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAAT--AAGTGAGG 26246 || || || | | ||| || | | ||||| |||||| || || | | Sbjct 1111 CCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAACTAA-- 1054 Query 26247 AAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACAC 26306 |||| ||||| || ||||||||| || | | |||| ||| || | | || | Sbjct 1053 AAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGAATACTTAATCTACGC 994 Query 26307 CAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGT 26366 | ||| || ||||||||||| || || || || | || ||||||| | |||||||| Sbjct 993 CGAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAAAGT 934 Query 26367 TAAAAGTACC-AGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 | |||||||| ||| || || | |||||| |||| | ||| || ||||| || | || Sbjct 933 TGAAAGTACCGAGA-ATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGG 875 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | |||||| | || | ||| || | | ||||||| |||||||| || ||||| Sbjct 874 TAGATTAAGAAACCAGCAATAGCAGCTGCAATAGGTGCTGAATATGCAATAATAATCCAA 815 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCT 26545 || ||| || | ||| || |||||||||| | || || ||||| || Sbjct 814 GGGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 755 Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGT 26605 | ||| ||||| | | ||| || | | | || |||||||| |||| ||| || || | Sbjct 754 AGTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAATA 695 Query 26606 GTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACT 26665 | |||||||| || |||||||| || | || || || ||| | | | | Sbjct 694 GATGTTGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCCCCAGAAGTAAGAATAATG 635 Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725 || || | || |||||||||||||| | || || || ||| | ||||| || || Sbjct 634 GCACCAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAAGTTCACGAATATCA 575 Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGC 26757 | |||||||| | || | ||| ||||| || Sbjct 574 TTAATATCTACTGAAGGGGTTGCAATGAAAGC 543 >seq6213 Length=1415 Score = 215 bits (238), Expect = 2e-51 Identities = 389/563 (69%), Gaps = 7/563 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 1141 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1082 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| || |||| || | ||| ||||| | Sbjct 1081 GCCCGGTTAATAATATCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTACAGTT 1022 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 | || ||||| || |||||||| | ||||| |||| ||||| | ||| || | | Sbjct 1021 TTATTGAAGTTGAACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACGTGAAC 962 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || | | || |||||| | | |||||||| | | |||| ||| || ||| Sbjct 961 CAAATACATATCACAGGCCAATCTGTTAAGAAGAAATGTAAACAACGAGGGTTGTTGAAA 902 Query 26117 CTCGCATACTGAAAA-ATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 || |||| |||||| || |||| ||||| || || || ||||| | ||||||||| | Sbjct 901 CTATCATA-TGAAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTATAATT 843 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| |||| || || || || | ||| || | | ||||| ||||| Sbjct 842 TTCTTCCTCTTAACCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 783 Query 26236 AAT--AAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 || || | | |||| ||||| || |||||| || ||| || | || ||||| Sbjct 782 TATCAAACTAA--AAGTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGAAT 725 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || | ||| || || ||| || ||||||||||| || || || || || |||||||| Sbjct 724 ACTCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGAAT 665 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 |||| ||||||||| ||||||||||| || || | | |||| |||||| |||| | | Sbjct 664 ACGATCATAAAGTTGAAAGTACCAGACATTCCTAAAAGCATACCATCA-AAAAAGTTTCC 606 Query 26414 TGTCCGAAAGGATAAACTAAGAA 26436 || |||| || || | ||||| Sbjct 605 TGCCCGATTGGGTAGATCAAGAA 583 >seq21559 Length=2991 Score = 179 bits (198), Expect = 1e-40 Identities = 492/745 (66%), Gaps = 13/745 (2%) Strand=Plus/Minus Query 26122 ATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTC 26181 ||| ||||| || |||| ||||| || || || ||||| ||||||||||| || ||||| Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566 Query 26182 ATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAG 26241 ||||| || || || | | ||| || | | ||||| ||||| || | Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506 Query 26242 TGAGGAAGTAACCAA--ACTTCCGTGCATAGCAGCGAAAA---GAGCTCCACCGAAAACC 26296 ||||| |||| | || |||||| || || | ||||| | ||| || Sbjct 2505 ACTAGAAGTTCCCAAGGAATTA--TGCATAACACTAAATAAAGGAGCTGCT--GAATACT 2450 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || | ||| || ||||||||||| || || | | | |||||||||| Sbjct 2449 CCAGCTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGA 2390 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| ||||||| |||| | | |||||| |||||| ||| || ||||| Sbjct 2389 ATCATAAAGTTGAAAGTACAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGA 2330 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | |||||| | | ||| || | | || |||| |||||||| | Sbjct 2329 CCAATTGGGTAGATTAAGAAAATAGTAGTAGCAGCTGCAACAGGAGCTGGATATGCAATA 2270 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || ||| || |||||||||| | || ||| Sbjct 2269 GTAATCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAA 2210 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | || |||| | | ||| || | ||| || |||||||| |||| ||| Sbjct 2209 GCTACACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAG 2150 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | |||||||| || ||||||||||| | || | || | ||| Sbjct 2149 TCATCAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATA 2090 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 | | | || | || |||||||||||||| | || || || ||| || ||| Sbjct 2089 TGAATAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCA 2030 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 | || ||||| |||||||| || | ||||| ||||| || | ||||| ||| | | Sbjct 2029 TGAATACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACA-AAATT 1971 Query 26776 GGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | | | | ||| |||| || || | || || |||||||| | ||| || || || | Sbjct 1970 TACGGTCAATAAAGTAGGG-ATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGT 1912 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| | || | ||||| |||||| Sbjct 1911 CAGTGCAGGTTATCCACTAACAAAA 1887 Score = 132 bits (146), Expect = 1e-26 Identities = 213/306 (70%), Gaps = 9/306 (3%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| | | || || ||||||||||||||||| || |||||||| || | || | |||| Sbjct 2927 GCTAGGCCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACCTCCATACCAAAGTTA 2868 Query 25937 GCTCGGTT--------TAATAC-ATCAGCCCATGTAGGTATTATCTTTCCATTAACATCT 25987 | | ||| ||||| ||||||||| || ||||| || | | ||| Sbjct 2867 ACCCAGTTAACCCAGTTAATAATATCAGCCCAAGTGTTAATTATGCCACCTTCACTATCA 2808 Query 25988 ACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATA 26047 ||||| | || || ||||| | | ||||| || || || || |||| ||||| | | Sbjct 2807 ACTACATATTGATTGAAGTTGCACTCGTTTAGATTGAAAGCTATAGTGCTAATACCTAAA 2748 Query 26048 GATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTG 26107 | || | ||| || || | || ||||||| | | |||||||| | |||||| | Sbjct 2747 GCCGTGAACCAGATACCTATTACAAGCCAAGTTTCTATGAAGAAATGTAAAGAACGAGAG 2688 Query 26108 TTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATA 26167 || || ||||| ||||| ||||| || |||| ||||| || || || ||||| |||||| Sbjct 2687 TTGTTGAAACTAGCATATTGAAATATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 2628 Query 26168 TTATAT 26173 |||||| Sbjct 2627 TTATAT 2622 >seq14731 Length=28268 Score = 158 bits (174), Expect = 4e-34 Identities = 224/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 25879 TAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGC 25938 || ||| || || ||||||||||||||||| || ||||||||||| | || |||||||| Sbjct 20815 TAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGC 20874 Query 25939 TCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTG 25998 ||||| | | || |||||| || |||| || | | ||| ||||| || || Sbjct 20875 CCGGTTAATAATATAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTACAGATTG 20934 Query 25999 GTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCA 26058 || ||||| || | |||||||| || ||||| |||| ||| | | || || | ||| Sbjct 20935 ATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCGTGAACCA 20994 Query 26059 TATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACT 26118 || | | || ||||||| || | |||||| | | |||||| ||| || | ||| Sbjct 20995 AATACTTATTACAGGCCAAGCTGCTAAGAAGAAACGTAAAGAACGAGAGTTGTTGAGACT 21054 Query 26119 CGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTC 26178 |||| ||||| || ||| ||||| || || || ||| | ||||||||||| || || Sbjct 21055 AACATATTGAAAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTATAAGTTTC 21114 Query 26179 TTCATCTTGCCCAAA 26193 ||| ||||| || || Sbjct 21115 TTCCTCTTGACCGAA 21129 >seq1192 Length=17806 Score = 132 bits (146), Expect = 1e-26 Identities = 229/331 (69%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| | || ||||||||||||||||| || ||| |||||| | || |||||| Sbjct 2654 GCTAGGTCTGGAGGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTTA 2595 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| | ||||| || | | ||| ||||| || Sbjct 2594 GCCCGATTAATAATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGAT 2535 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 | || ||||| || | |||||||| || ||||| |||| ||||| | || || | | Sbjct 2534 TAATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAAC 2475 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || | | ||| ||| || | |||||||| | |||||| ||| || ||| Sbjct 2474 CAAATACCTA-TATAGGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 2416 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || |||| | || |||| ||| | || || || ||||| ||||| ||||| || Sbjct 2415 CTAACATATT---TTATCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAGTT 2359 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAAT 26207 ||||| ||||| || || | || |||| || Sbjct 2358 TCTTCCTCTTGACCGAATATGTAACCATCAT 2328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147627107790240