Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 259 1e-64
seq6213 215 2e-51
seq21559 179 1e-40
seq14731 158 4e-34
seq1192 132 1e-26
>seq10156
Length=9543
Score = 259 bits (286), Expect = 1e-64
Identities = 585/872 (67%), Gaps = 8/872 (1%)
Strand=Plus/Minus
Query 25889 GGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGGTTTAAT 25948
||||| |||||||||||| | || |||||||| || | || | |||| | || || |
Sbjct 1409 GGAAA-TTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCCGATTAATA 1351
Query 25949 ACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTGGTTAAAGTTA 26008
| ||||||||| || ||||| || | | ||| ||||| | || || |||||
Sbjct 1350 ATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAAGTTG 1291
Query 26009 AAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACA 26068
|| || |||||||| || |||||||||| |||| | || | | ||| || ||
Sbjct 1290 AATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGCCATGA-CCAAATACCTCTT 1232
Query 26069 ACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGA 26128
|| |||||||| || | |||||||| | |||||| ||| || ||||| ||||| ||
Sbjct 1231 ACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATCGA 1172
Query 26129 AAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGC 26188
|| || ||| ||||| || || || ||||| | |||||| || || ||||| ||||
Sbjct 1171 AAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCTCTTAA 1112
Query 26189 CCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAAT--AAGTGAGG 26246
|| || || | | ||| || | | ||||| |||||| || || | |
Sbjct 1111 CCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAACTAA-- 1054
Query 26247 AAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACAC 26306
|||| ||||| || ||||||||| || | | |||| ||| || | | || |
Sbjct 1053 AAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGAATACTTAATCTACGC 994
Query 26307 CAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGT 26366
| ||| || ||||||||||| || || || || | || ||||||| | ||||||||
Sbjct 993 CGAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAAAGT 934
Query 26367 TAAAAGTACC-AGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425
| |||||||| ||| || || | |||||| |||| | ||| || ||||| || | ||
Sbjct 933 TGAAAGTACCGAGA-ATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGGG 875
Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485
|| | |||||| | || | ||| || | | ||||||| |||||||| || |||||
Sbjct 874 TAGATTAAGAAACCAGCAATAGCAGCTGCAATAGGTGCTGAATATGCAATAATAATCCAA 815
Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCT 26545
|| ||| || | ||| || |||||||||| | || || ||||| ||
Sbjct 814 GGGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCA 755
Query 26546 ATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGT 26605
| ||| ||||| | | ||| || | | | || |||||||| |||| ||| || || |
Sbjct 754 AGTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAATA 695
Query 26606 GTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACT 26665
| |||||||| || |||||||| || | || || || ||| | | | |
Sbjct 694 GATGTTGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCCCCAGAAGTAAGAATAATG 635
Query 26666 GCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCA 26725
|| || | || |||||||||||||| | || || || ||| | ||||| || ||
Sbjct 634 GCACCAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAAGTTCACGAATATCA 575
Query 26726 TCTATATCTACAGGCGGTGCTGCGATGAAGGC 26757
| |||||||| | || | ||| ||||| ||
Sbjct 574 TTAATATCTACTGAAGGGGTTGCAATGAAAGC 543
>seq6213
Length=1415
Score = 215 bits (238), Expect = 2e-51
Identities = 389/563 (69%), Gaps = 7/563 (1%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || ||||||||||| | || ||||||
Sbjct 1141 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1082
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| || |||| || | ||| ||||| |
Sbjct 1081 GCCCGGTTAATAATATCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTACAGTT 1022
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
| || ||||| || |||||||| | ||||| |||| ||||| | ||| || | |
Sbjct 1021 TTATTGAAGTTGAACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACGTGAAC 962
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116
|| || | | || |||||| | | |||||||| | | |||| ||| || |||
Sbjct 961 CAAATACATATCACAGGCCAATCTGTTAAGAAGAAATGTAAACAACGAGGGTTGTTGAAA 902
Query 26117 CTCGCATACTGAAAA-ATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
|| |||| |||||| || |||| ||||| || || || ||||| | ||||||||| |
Sbjct 901 CTATCATA-TGAAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTATAATT 843
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
||||| |||| || || || || | ||| || | | ||||| |||||
Sbjct 842 TTCTTCCTCTTAACCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 783
Query 26236 AAT--AAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293
|| || | | |||| ||||| || |||||| || ||| || | || |||||
Sbjct 782 TATCAAACTAA--AAGTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGAAT 725
Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353
|| | ||| || || ||| || ||||||||||| || || || || || ||||||||
Sbjct 724 ACTCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGAAT 665
Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413
|||| ||||||||| ||||||||||| || || | | |||| |||||| |||| | |
Sbjct 664 ACGATCATAAAGTTGAAAGTACCAGACATTCCTAAAAGCATACCATCA-AAAAAGTTTCC 606
Query 26414 TGTCCGAAAGGATAAACTAAGAA 26436
|| |||| || || | |||||
Sbjct 605 TGCCCGATTGGGTAGATCAAGAA 583
>seq21559
Length=2991
Score = 179 bits (198), Expect = 1e-40
Identities = 492/745 (66%), Gaps = 13/745 (2%)
Strand=Plus/Minus
Query 26122 ATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTC 26181
||| ||||| || |||| ||||| || || || ||||| ||||||||||| || |||||
Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566
Query 26182 ATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAG 26241
||||| || || || | | ||| || | | ||||| ||||| || |
Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506
Query 26242 TGAGGAAGTAACCAA--ACTTCCGTGCATAGCAGCGAAAA---GAGCTCCACCGAAAACC 26296
||||| |||| | || |||||| || || | ||||| | ||| ||
Sbjct 2505 ACTAGAAGTTCCCAAGGAATTA--TGCATAACACTAAATAAAGGAGCTGCT--GAATACT 2450
Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356
||||| || | ||| || ||||||||||| || || | | | ||||||||||
Sbjct 2449 CCAGCTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGA 2390
Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416
| ||||||||| ||||||| |||| | | |||||| |||||| ||| || |||||
Sbjct 2389 ATCATAAAGTTGAAAGTACAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGA 2330
Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476
|| | || || | |||||| | | ||| || | | || |||| |||||||| |
Sbjct 2329 CCAATTGGGTAGATTAAGAAAATAGTAGTAGCAGCTGCAACAGGAGCTGGATATGCAATA 2270
Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536
||||| || | ||| || || ||| || |||||||||| | || |||
Sbjct 2269 GTAATCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAA 2210
Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596
||||| || | || |||| | | ||| || | ||| || |||||||| |||| |||
Sbjct 2209 GCTACACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAG 2150
Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656
|| || | | | |||||||| || ||||||||||| | || | || | |||
Sbjct 2149 TCATCAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATA 2090
Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716
| | | || | || |||||||||||||| | || || || ||| || |||
Sbjct 2089 TGAATAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCA 2030
Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775
| || ||||| |||||||| || | ||||| ||||| || | ||||| ||| | |
Sbjct 2029 TGAATACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACA-AAATT 1971
Query 26776 GGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834
| | | | ||| |||| || || | || || |||||||| | ||| || || || |
Sbjct 1970 TACGGTCAATAAAGTAGGG-ATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGT 1912
Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859
|||| | || | ||||| ||||||
Sbjct 1911 CAGTGCAGGTTATCCACTAACAAAA 1887
Score = 132 bits (146), Expect = 1e-26
Identities = 213/306 (70%), Gaps = 9/306 (3%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| | | || || ||||||||||||||||| || |||||||| || | || | ||||
Sbjct 2927 GCTAGGCCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACCTCCATACCAAAGTTA 2868
Query 25937 GCTCGGTT--------TAATAC-ATCAGCCCATGTAGGTATTATCTTTCCATTAACATCT 25987
| | ||| ||||| ||||||||| || ||||| || | | |||
Sbjct 2867 ACCCAGTTAACCCAGTTAATAATATCAGCCCAAGTGTTAATTATGCCACCTTCACTATCA 2808
Query 25988 ACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATA 26047
||||| | || || ||||| | | ||||| || || || || |||| ||||| | |
Sbjct 2807 ACTACATATTGATTGAAGTTGCACTCGTTTAGATTGAAAGCTATAGTGCTAATACCTAAA 2748
Query 26048 GATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTG 26107
| || | ||| || || | || ||||||| | | |||||||| | |||||| |
Sbjct 2747 GCCGTGAACCAGATACCTATTACAAGCCAAGTTTCTATGAAGAAATGTAAAGAACGAGAG 2688
Query 26108 TTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATA 26167
|| || ||||| ||||| ||||| || |||| ||||| || || || ||||| ||||||
Sbjct 2687 TTGTTGAAACTAGCATATTGAAATATCAATCGGCCAAAATAACCATGAGCAGCTACAATA 2628
Query 26168 TTATAT 26173
||||||
Sbjct 2627 TTATAT 2622
>seq14731
Length=28268
Score = 158 bits (174), Expect = 4e-34
Identities = 224/315 (71%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 25879 TAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGC 25938
|| ||| || || ||||||||||||||||| || ||||||||||| | || ||||||||
Sbjct 20815 TAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGC 20874
Query 25939 TCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACTG 25998
||||| | | || |||||| || |||| || | | ||| ||||| || ||
Sbjct 20875 CCGGTTAATAATATAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTACAGATTG 20934
Query 25999 GTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCA 26058
|| ||||| || | |||||||| || ||||| |||| ||| | | || || | |||
Sbjct 20935 ATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCGTGAACCA 20994
Query 26059 TATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACT 26118
|| | | || ||||||| || | |||||| | | |||||| ||| || | |||
Sbjct 20995 AATACTTATTACAGGCCAAGCTGCTAAGAAGAAACGTAAAGAACGAGAGTTGTTGAGACT 21054
Query 26119 CGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTC 26178
|||| ||||| || ||| ||||| || || || ||| | ||||||||||| || ||
Sbjct 21055 AACATATTGAAAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTATAAGTTTC 21114
Query 26179 TTCATCTTGCCCAAA 26193
||| ||||| || ||
Sbjct 21115 TTCCTCTTGACCGAA 21129
>seq1192
Length=17806
Score = 132 bits (146), Expect = 1e-26
Identities = 229/331 (69%), Gaps = 4/331 (1%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| | || ||||||||||||||||| || ||| |||||| | || ||||||
Sbjct 2654 GCTAGGTCTGGAGGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTTA 2595
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| || || | | ||||||||| | ||||| || | | ||| ||||| ||
Sbjct 2594 GCCCGATTAATAATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGAT 2535
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
| || ||||| || | |||||||| || ||||| |||| ||||| | || || | |
Sbjct 2534 TAATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAAC 2475
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116
|| || || | | ||| ||| || | |||||||| | |||||| ||| || |||
Sbjct 2474 CAAATACCTA-TATAGGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAA 2416
Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176
|| |||| | || |||| ||| | || || || ||||| ||||| ||||| ||
Sbjct 2415 CTAACATATT---TTATCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAGTT 2359
Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAAT 26207
||||| ||||| || || | || |||| ||
Sbjct 2358 TCTTCCTCTTGACCGAATATGTAACCATCAT 2328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147627107790240
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