Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq10156 316 2e-81 seq6213 295 8e-75 seq21559 232 8e-56 seq14731 181 1e-40 seq1192 140 4e-28 seq6906 86.0 7e-12 >seq10156 Length=9543 Score = 316 bits (350), Expect = 2e-81 Identities = 609/891 (68%), Gaps = 14/891 (2%) Strand=Plus/Plus Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || |||||||| | ||| | ||||| ||| ||| ||||||||||| | ||| ||| Sbjct 543 GCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTGGATCT 602 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 || | || || ||||| || || | |||||| || | | || ||| || || ||| Sbjct 603 CTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTATAGGT 662 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | ||||| || || || ||||||||| || || ||||||| ||||| || ||||| ||| Sbjct 663 TTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATGGCGGT 722 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 155310 |||| | || | || | ||||| | | || | | ||| |||||| || Sbjct 723 CCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 782 Query 155311 TGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 155370 ||||||||| || | || | || |||| |||||||| | ||||||| || ||||| Sbjct 783 TGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAGCACCT 842 Query 155371 GTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGAT 155430 | | ||||| | |||| ||| | | || || | |||||||| || ||| || Sbjct 843 ATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAAT 902 Query 155431 GCGATGCCTCTTGGTA-TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACA 155489 | |||||| | || | |||| |||||||| |||| |||| | | ||||| || | || Sbjct 903 GGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATGCTTAGCA 961 Query 155490 CAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCT 155549 ||| |||||||||||||| || |||||| | || |||| || ||| |||| || | Sbjct 962 CAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGCTCCTT 1021 Query 155550 TTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCA 155609 || ||||||||| ||||| ||||| || | | | || | ||||| || || | Sbjct 1022 ATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCACAGAAAA 1081 Query 155610 AGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGC 155669 || ||| || | | |||| ||||| |||| ||||||||||| || ||| | || Sbjct 1082 TGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATTATAGC 1141 Query 155670 TGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAG 155729 ||||||||| || || || | | ||||| | ||||| ||||||||||| | Sbjct 1142 TGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCTCGTTC 1201 Query 155730 TCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGT 155789 | | || |||||| | || | |||||||| | || ||| | | ||| | || | Sbjct 1202 TTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTC-ATGGCTTTAAGTAT 1260 Query 155790 GTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAG 155849 || ||||| |||||||| ||||| ||||||||||| || | |||||| || ||| Sbjct 1261 TAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGA---TAG 1317 Query 155850 TGGTAAAGTC-----ATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATG 155904 || || ||| || || ||||| || ||| |||| || | | |||||||| Sbjct 1318 TG--AAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATG 1375 Query 155905 GAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 || || ||||| || | ||| ||||| || ||||||| | ||| |||||| Sbjct 1376 GAGGTTATGCATGAACATAATGCTCATAATTTCCCTC-TACCCTAGCTGCT 1425 >seq6213 Length=1415 Score = 295 bits (326), Expect = 8e-75 Identities = 589/874 (67%), Gaps = 43/874 (5%) Strand=Plus/Plus Query 155123 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACG 155182 |||| ||| || | || | || || || || |||||||| || | |||| ||| | | Sbjct 276 CTGGATCTCTACTTTACGAAAATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGG 335 Query 155183 CAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACA 155242 | || || | ||||| | || || |||||||||||| | ||||||| ||||| || | Sbjct 336 CTATATGTTTGCACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATA 395 Query 155243 ATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTG 155302 |||||||||||| | || | || | ||||| | | || | | ||| | Sbjct 396 ATGGTGGTCCTTATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGG 455 Query 155303 GTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACT 155362 ||||| ||||||||||| || || || || |||||||||||| | ||||||||| | Sbjct 456 GTCGTGAGTGGGAACTTAGTTTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATT 515 Query 155363 CTGCACCAGT---ATCT------GCTGCGTTC------------------------GCTG 155389 | || || || |||| |||| ||| ||| Sbjct 516 CAGCTCCCGTGGCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTT 575 Query 155390 T----ATTCCTTGTT-TATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGG 155444 | ||| |||| | || || |||| || | |||| | ||||| |||| | | || Sbjct 576 TTTTGATTTCTTGATCTACCCAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGG 634 Query 155445 TATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCA 155504 || ||||||||||| |||| |||| |||| ||||||| || ||||| ||||||||||| Sbjct 635 AATGTCTGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCA 694 Query 155505 CCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCA 155564 ||| || |||||| | || ||||| | || ||||| || || || ||| || |||||| Sbjct 695 CCCATTTCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCA 754 Query 155565 CGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTA 155624 |||| ||||| || | | | || | ||||| || || | || ||| || | Sbjct 755 TGGTTTCTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGA 814 Query 155625 TGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTT 155684 ||||| ||||| |||| ||||||| |||||| ||| | ||||||||||| || || Sbjct 815 AGGTTAATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTT 874 Query 155685 CGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCT 155744 || || | ||||| |||| ||||||||| | | || | || |||||| | Sbjct 875 TGGCCGATTGATCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTT 934 Query 155745 TGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATT 155804 | | ||||||||| | || || ||| || || | ||| | || ||||| | Sbjct 935 AACAGATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTC 994 Query 155805 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGT--AGACGCTAGTGGTAAAGTCATC 155862 |||||| ||| ||||||||||| | ||||||| | | || | ||| || || Sbjct 995 CAACCTAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAA--GGTTGCGTAATT 1052 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGT 155922 || ||||| || ||| ||||||| ||| |||||||||||||| ||||| || ||| Sbjct 1053 AACACTTGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGT 1112 Query 155923 AACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 || ||||| ||||||||||| ||||| ||||||| Sbjct 1113 AATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 1146 >seq21559 Length=2991 Score = 232 bits (256), Expect = 8e-56 Identities = 494/736 (67%), Gaps = 9/736 (1%) Strand=Plus/Plus Query 154976 AGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCC 155035 ||||| |||| | ||||||| ||| | ||| | || ||||| |||||| | || |||| Sbjct 1894 AGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCC 1953 Query 155036 CTTGCCTCCTCGCTGCTGCTACATGCT----TCATTGTCGCCTTCATTGCTGCACCTCCT 155091 || | | | | || || | | ||||| || |||||||| || |||| Sbjct 1954 CTACTTTATTGACCG----TAAATTTTGTATTTATTGTAGCTTTCATTGCAGCGTCTCCA 2009 Query 155092 GTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATC 155151 ||||| ||||||||||||| |||||| | ||| ||| || | || || ||||| || Sbjct 2010 GTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATT 2069 Query 155152 ATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGG 155211 || | | ||| || | | || ||| | || | ||| | || || || || || ||| Sbjct 2070 ATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGG 2129 Query 155212 GAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTC 155271 ||||||||| || ||||||| ||||| || ||||| || |||| | || | || | Sbjct 2130 GAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTA 2189 Query 155272 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTT 155331 |||| | | || | | ||| ||| || ||||||||||| || | |||| Sbjct 2190 TACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTG 2249 Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTA 155391 || ||||| |||||||| | ||||||| | || || || | ||||| || | Sbjct 2250 GGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATT 2309 Query 155392 TTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCT 155451 ||| | | || || | |||||||| || | ||||| |||||| | | |||| Sbjct 2310 TTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTC 2369 Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 ||||||| |||| |||| | | |||||||| | | | |||||||||||||| || Sbjct 2370 TGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTT 2429 Query 155512 CACATGCTTGGAGTAGCAGGTGTGTTCGGTGGAT-CTCTTTTCTCTGCTATGCACGGTTC 155570 |||||| | | ||||| || || ||| | | | || | || || |||||| ||| Sbjct 2430 CACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATAATTC 2489 Query 155571 ATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTA 155630 |||| || ||| | || | ||||| || || | || ||| || | | ||| Sbjct 2490 CTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTA 2549 Query 155631 CAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCG 155690 | ||||| ||||| |||||||||||||| ||||| ||||||||||| || || || || Sbjct 2550 CCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCG 2609 Query 155691 TCTTATCTTCCAGTAT 155706 | ||||| || ||| Sbjct 2610 ATTGATCTTTCAATAT 2625 >seq14731 Length=28268 Score = 181 bits (200), Expect = 1e-40 Identities = 241/333 (72%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||||| ||||| ||||| |||||||||||||| ||||| | ||||||||| || || Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCAC--TTCTTCC 155743 || | | ||||| || |||| |||||||||| | |||| || |||||| Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGT--TCTTTACGTTTCTTCT 21021 Query 155744 TTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCAT 155803 | || || |||||||| | | || ||| || ||| | | | | || ||||| | Sbjct 21020 TAGCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTT 20961 Query 155804 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCC 155863 ||||||| ||| | ||||||||||| || |||||||| || | ||| || || Sbjct 20960 TCAACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTA 20901 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 || ||||| | ||| ||||||| ||| |||||||||||||| ||||| || |||| Sbjct 20900 ACACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 20841 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 | ||||| ||||||||||| ||||| |||||| Sbjct 20840 ATGCTCATAACTTCCCTCTAGACCTAACTGCTG 20808 >seq1192 Length=17806 Score = 140 bits (154), Expect = 4e-28 Identities = 238/338 (70%), Gaps = 14/338 (4%) Strand=Plus/Plus Query 155624 ATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACT 155683 ||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 155684 TCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCC 155743 || || | | | | |||| ||||||||||| | | | || |||||| Sbjct 2391 CTGGCCGATTGA---TAAAATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 155744 TTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCAT 155803 | || || | |||| | | | || ||| || || | ||| | || ||||| | Sbjct 2448 TAGCAGCTTTGCCTAT-ATAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 155804 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGT--CAT 155861 ||||||| ||| | ||||||||||| | |||||||| || || || || || ||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGA---TAATG--AAGGTTGCAT 2561 Query 155862 CCCT-ACA--TGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGA 155918 | ||| ||||| || ||| |||| || ||| |||||| || |||| | ||| || Sbjct 2562 AATTAACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGA 2621 Query 155919 GCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 ||||| ||||| |||||||||| ||||| |||| || Sbjct 2622 ACGTAATGCTCATAACTTCCCTCCAGACCTAGCTGTTG 2659 >seq6906 Length=33569 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 155434 ATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAAT 155493 |||||| | || |||||||||||||||| | ||| | || |||||||| | ||||| Sbjct 25517 ATGCCTTTAGGAATCTCTGGTACTTTTATCCTTATCATTGTATTCCAAGCTTAGCACAAC 25458 Query 155494 ATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTC 155553 ||| ||||| |||| || |||| | || ||| | || ||||| | | || ||| Sbjct 25457 ATCATTATGTACCCATTTTGCATGTTAGGCATAGTTAGAGTATTCGGGGACTTCCTATTC 25398 Query 155554 TCTGCTATGCACGGTTCATTGGTGACATCT 155583 ||||||||| ||||| ||||| || ||| Sbjct 25397 AGTGCTATGCATGGTTCTTTGGTAACTTCT 25368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584481396635320