Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq10156 255 2e-63 seq21559 235 2e-57 seq6213 208 2e-49 seq14731 131 5e-26 seq1192 109 2e-19 >seq10156 Length=9543 Score = 255 bits (282), Expect = 2e-63 Identities = 585/877 (67%), Gaps = 3/877 (0%) Strand=Plus/Minus Query 40541 TAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTT 40600 |||||| || || ||||| ||| | || ||||| || |||||||| | | | || Sbjct 1414 TAGAGGGAAATTATGAGCATTATGTTCATGCATAACCTCCATACCAAAGTTAACCCGATT 1355 Query 40601 AAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAA 40660 || || |||||||||||| ||| | ||| | | || ||||| | || || || Sbjct 1354 AATAATATCAGCCCAAGTGTTAATTATGCGACCTTCACTATCAACTACAAATTGATTGAA 1295 Query 40661 GTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCC 40720 ||| || || || ||||| |||||||| || |||| | | | | ||| || || Sbjct 1294 GTTGAATCCGTTTAGGTTGAAAGCCATTGTGCTAATACTTAAAGCCATGA-CCAAATACC 1236 Query 40721 AATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATA 40780 | || || ||| | | ||||| |||| | ||| |||||||| |||||| Sbjct 1235 TCTTACAGGCCAAGTTGCTATGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATA 1176 Query 40781 TTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTC 40840 | |||| || | | ||||| ||||| || ||||||| || || ||||| || | || Sbjct 1175 TCGAAAGATCAATGGGCCAAAATAACCATGAGCAGCTATAATATTTTAAGTTTCTTCCTC 1116 Query 40841 CTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGA 40900 | ||| || || | | || |||||| |||| ||||| || | || | Sbjct 1115 TTAACCGAATCGGTAATCTTCATTAGCAGATTCATTTTCTGTGGTTTCTCTTATCAAACT 1056 Query 40901 GGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAAC 40960 |||| || | | || ||||||||| ||| || | |||| || || | || Sbjct 1055 AAAAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCCACTGAATACTTAATCTAC 996 Query 40961 GCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAA 41020 ||||| ||| || ||||||||||| || |||||||| | || ||||| | || ||| || Sbjct 995 GCCGAACATGTGAAATGGGTGCATAAGGATGTTGTGCTAAGCATGGAATAGAATCATAAA 936 Query 41021 GTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGG 41080 |||||| || || ||||||||||||||||||| ||| || || ||||| | ||| Sbjct 935 GTTGAAAGTACCGAGAATTCCTAAAGGCATACCATTAGAAAAGCTTCCTTGACCAATTGG 876 Query 41081 ATAAACTAAGAATACAGCTAGAGCTGCTGACAAT-GGAGCTGTGTATGCCACAAATATCC 41139 || | |||||| |||| | ||| |||| |||| || |||| ||||| | || |||| Sbjct 875 GTAGATTAAGAAACCAGCAATAGCAGCTG-CAATAGGTGCTGAATATGCAATAATAATCC 817 Query 41140 ATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTC 41199 | || |||||| | ||| | ||||||||||| | ||| ||| ||||| | Sbjct 816 AAGGGTGCATACCCACACTGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACAC 757 Query 41200 CTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA 41259 | | ||||||||| | ||||| || | | | || ||||| || |||| ||| || || | Sbjct 756 CAAGTAAAAAGTGTAGAACAATTAGCTCAGAAGGACCGCCATTATATAACCATTCATCAA 697 Query 41260 GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGA 41319 | |||||||| |||||||| || || | || || || ||| | ||| | Sbjct 696 TAGATGTTGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCCCCAGAAGTAAGAATAA 637 Query 41320 CAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGC 41379 || ||| | ||||||||||| ||||| | || || || ||| | ||||| || Sbjct 636 TGGCACCAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAAGTTCACGAATAT 577 Query 41380 CATCTATATCTACAGGCGGTGCTGCGATAAAGGCGAT 41416 ||| |||||||| | || | ||| || || || || Sbjct 576 CATTAATATCTACTGAAGGGGTTGCAATGAAAGCTAT 540 >seq21559 Length=2991 Score = 235 bits (260), Expect = 2e-57 Identities = 503/742 (68%), Gaps = 7/742 (1%) Strand=Plus/Minus Query 40778 ATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCC 40837 ||||||||| || | || ||||| ||||| || |||||||| || |||||||| || | Sbjct 2625 ATATTGAAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTC 2566 Query 40838 TTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGAT 40897 || ||||| || || | | || ||||| |||| ||||| |||| || | Sbjct 2565 CTCTTGACCGAATCGGTAATCTTCATTAACAGATTCGTTTTCTGTGGTTTCCCTTATCAA 2506 Query 40898 TGAGGAAGTAAC-AAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCA-AAGACGCCT 40955 ||||| | |||| | |||||| || ||| |||| | | | || || || Sbjct 2505 ACTAGAAGTTCCCAAGGAATTA-TGCATAACACTAAATAAAGGAGCTGCTGAATACTCCA 2447 Query 40956 GCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAAC 41015 || ||| | | ||| || ||||||||||| || |||| | | |||||||| | || | Sbjct 2446 GCTACGTCTAACATGTGAAATGGGTGCATAAGGATGTCTTCCTAAGCTTGGAATAGAATC 2387 Query 41016 ATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCG 41075 || |||||||| || | |||| ||||||||||||||||| | || || ||||| Sbjct 2386 ATAAAGTTGAAAGTACAGAAGATTTCTAAAGGCATACCATCATAAAAGCTTCCTTGACCA 2327 Query 41076 AATGGATAAACTAAGAATACAGCTAG-AGCTGCTGACAATGGAGCTGTGTATGCCACAAA 41134 | ||| || | |||||| | || ||| ||| |||| | ||||||| ||||| | | Sbjct 2326 ATTGGGTAGATTAAGAAAATAG-TAGTAGCAGCTGCAACAGGAGCTGGATATGCAATAGT 2268 Query 41135 TATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGC 41194 ||||| || | |||||| || ||| | ||||||||||| | ||| ||| || Sbjct 2267 AATCCAAGGGCGCATACCCAGACTGAAACTAAGTTCCCACTCACAACCCATCTATCAAGC 2208 Query 41195 TACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTC 41254 ||| || | ||||||| | ||||| || | ||| || ||||| || |||| ||| || Sbjct 2207 TACACCAAGCAAAAAGTATAGAACAATTAGCTCATAAGGCCCGCCATTATATAACCAGTC 2148 Query 41255 GTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGG 41314 || | | | |||||||| |||||||| ||||| | || | || | ||| | | Sbjct 2147 ATCAATAGATGCTGCTTCCCATATTGGGTAAAAATGCAAACCTGTAGCCTCAGAAATATG 2088 Query 41315 AACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACG 41374 || | || | | ||||||||||| ||||| | || || || ||| || ||| | Sbjct 2087 AATAATGGCATAAAAAATAATATTGTTTCCGTAAAGTAGAGATCCAAAAATAGGTTCATG 2028 Query 41375 TATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAG 41433 || ||||| |||||||| || | ||||| || || || | || || ||| || Sbjct 2027 AATACCATCAATATCTACTGGAGACGCTGCAATGAAAGCTACAATAAATACAAAATTTA- 1969 Query 41434 CAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGG 41493 | || | ||| | || || || | ||||||||||| || | || ||||| ||||| | Sbjct 1968 CGGTCAATAAAGTAGGGATTATCAAAACACCAAACCATCCAATATAAAGGCGATTGTCAG 1909 Query 41494 TGCTAGTGACCCAGTTACAAAA 41515 ||| || | ||| | |||||| Sbjct 1908 TGCAGGTTATCCACTAACAAAA 1887 Score = 111 bits (122), Expect = 5e-20 Identities = 210/309 (68%), Gaps = 9/309 (3%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| | ||||||| ||||| ||||| ||||| || ||||| || |||||||| | Sbjct 2931 AGCAGCTAGGCCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACCTCCATACCAAA 2872 Query 40589 ----ACTCTGT-----CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGC 40639 || | || | ||||| || |||||||||||| ||| | ||| | | Sbjct 2871 GTTAACCCAGTTAACCCAGTTAATAATATCAGCCCAAGTGTTAATTATGCCACCTTCACT 2812 Query 40640 GTCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACC 40699 || ||||| | || || ||||| | | || || || ||||| ||||| ||||| Sbjct 2811 ATCAACTACATATTGATTGAAGTTGCACTCGTTTAGATTGAAAGCTATAGTGCTAATACC 2752 Query 40700 CATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACG 40759 | | || | ||| || || || || | ||| | | ||||| |||| | ||| Sbjct 2751 TAAAGCCGTGAACCAGATACCTATTACAAGCCAAGTTTCTATGAAGAAATGTAAAGAACG 2692 Query 40760 GCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTAC 40819 |||||||| ||||||||||||||| | || ||||| ||||| || |||||||| Sbjct 2691 AGAGTTGTTGAAACTAGCATATTGAAATATCAATCGGCCAAAATAACCATGAGCAGCTAC 2632 Query 40820 GATGTTATA 40828 || ||||| Sbjct 2631 AATATTATA 2623 >seq6213 Length=1415 Score = 208 bits (230), Expect = 2e-49 Identities = 557/858 (65%), Gaps = 39/858 (5%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 1146 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 1087 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || |||||||||||| ||| || ||| | || |||| Sbjct 1086 GGTTAGCCCGGTTAATAATATCAGCCCAAGTGTTAATTACGCAACCTTGCCTATCAACTA 1027 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | | | || ||||| || || ||||| |||||||||| ||||| | || | Sbjct 1026 CAGTTTTATTGAAGTTGAACTTGTTTAGGTTGGAAGCCATAGTGCTAATACCTAAAGACG 967 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || | || || || || | | ||||| |||| ||| |||| Sbjct 966 TGAACCAAATACATATCACAGGCCAATCTGTTAAGAAGAAATGTAAACAACGAGGGTTGT 907 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| | ||||| ||| || | || ||||| ||||| || ||||||| || |||| Sbjct 906 TGAAACTATCATATGAAAAGATCAATCGGCCAAAATAACCATGAGCAGCTAGAATATTAT 847 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 || | || | || | ||| || || || | || |||||| |||| ||||| | Sbjct 846 AATTTTCTTCCTCTTAACCGAATCATTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 787 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 ||| || | |||| || | | || |||||| || || | | || || | Sbjct 786 CCCTTATCAAACTAAAAGTTACCAAGAAACCATGCATATCACTGAATAGGGAGCCGCCGA 727 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || | || ||||| | ||| || ||||||||||| || |||||||| || |||||| Sbjct 726 ATACTCTAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCATCTTGGA 667 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATC----------- 41056 | || | ||| |||||||| || ||| ||||||||| |||||||||| Sbjct 666 ATACGATCATAAAGTTGAAAGTACCAGACATTCCTAAAAGCATACCATCAAAAAAGTTTC 607 Query 41057 --------------AGAGAAAGAA------------CCCTGACCGAATGGATAAACTAAG 41090 ||| ||||| ||| |||| ||| || || ||| Sbjct 606 CTGCCCGATTGGGTAGATCAAGAAATCAAAAAAGCTTCCTAGCCGATTGGGTAGACCAAG 547 Query 41091 AATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATA 41150 || ||||| | | | || || ||||||| ||||| ||| | ||| || | |||| Sbjct 546 AAAACAGCAATAATAGATGCCACGGGAGCTGAATATGCAACAGCAACCCAAGGACGCATA 487 Query 41151 CCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAG 41210 ||| | | | ||||||||||| | ||| ||| ||||| || | ||||||| Sbjct 486 CCTCGATGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAAAAG 427 Query 41211 TGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA-GTGTGCCGGC 41269 || | |||||||| | ||| || || || || |||| ||| || || | | || | || Sbjct 426 TGTACAACAATGAGCTCATAAGGACCACCATTATATAACCATTCATCAACATATG-CTGC 368 Query 41270 TTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGA 41329 |||||| ||||||| || || | | || || |||| | |||| | || ||||| Sbjct 367 TTCCCATATTGGGTGAAAGTGCAAACATATAGCCGTAGAAGTAGGAATAATGGCACCAGA 308 Query 41330 TATAATATTGTTCCCGTA 41347 |||||||| || |||| Sbjct 307 AATAATATTATTTTCGTA 290 >seq14731 Length=28268 Score = 131 bits (144), Expect = 5e-26 Identities = 222/322 (69%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| || || ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 20808 CAGCAGTTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 20867 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || || ||||||||| ||| || ||| | | || |||| Sbjct 20868 GGTTAGCCCGGTTAATAATATAAGCCCAAGTGTTAATTACGCGACCTTGACAATCAACTA 20927 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || || || ||||| || | || ||||| ||||||||||| ||| | | | | Sbjct 20928 CAGATTGATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATATCTAAAGCCG 20987 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || | || || || |||| | | ||||| ||| | ||| |||| Sbjct 20988 TGAACCAAATACTTATTACAGGCCAAGCTGCTAAGAAGAAACGTAAAGAACGAGAGTTGT 21047 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 ||| | |||||||||| || | | ||||| ||||| || ||| |||| || |||| Sbjct 21048 TGAGACTAACATATTGAAAGATCAATTGGCCAAAATAACCATGAGCAACTACAATATTAT 21107 Query 40828 AAGTCTCGCCTTCCTGACCAAA 40849 |||| || | || ||||| || Sbjct 21108 AAGTTTCTTCCTCTTGACCGAA 21129 >seq1192 Length=17806 Score = 109 bits (120), Expect = 2e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| |||| |||| ||||| ||||| ||||| || ||| | |||| || ||| || | Sbjct 2655 AGCTAGGTCTGGAGGGAAGTTATGAGCATTACGTTCATGCCTAACTTTCAGACCAAGGTT 2596 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 | |||| || |||||||||| | ||| | ||| | | || ||||| || Sbjct 2595 AGCCCGATTAATAATATCAGCCCAAATGTTAATTATGCAACCTTCATTATCAACTACAGA 2536 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 | || ||||| || | || ||||| ||||||||||| ||||| | | || | Sbjct 2535 TTAATTGAAGTTGAACCTGTTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGTCGTGAA 2476 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || || | || ||||| | | ||||| |||| | ||| |||||||| Sbjct 2475 CCAAATACCTAT-ATAGGCAAAGCTGCTAAGAAGAAATGTAAAGAACGAGAGTTGTTGAA 2417 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 | |||||| ||| | || ||| | ||||| || |||||||| ||||||||||| Sbjct 2416 ACTAACATATT---TTATCAATCGGCCAGAATAACCATGAGCAGCTACAATGTTATAAGT 2360 Query 40832 CTCGCCTTCCTGACCAAA 40849 || | || ||||| || Sbjct 2359 TTCTTCCTCTTGACCGAA 2342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143619812164998