Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq756 113 7e-20
seq14506 109 8e-19
seq9952 86.0 9e-12
>seq756
Length=57245
Score = 113 bits (124), Expect = 7e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || ||||||||||| ||||| || || || || || || ||
Sbjct 50692 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACCTTGGAGGTGGAGAGCTCG 50633
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||||||| |||||| ||||| || || || || || ||||| |||
Sbjct 50632 GACACAATTGACAACGTGAAAGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCAA 50573
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||||| ||| || |||||| | |||||| | ||| | | || ||||||
Sbjct 50572 CAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGTACTCTTGCGGACTATAAT 50513
Query 156003 AT 156004
||
Sbjct 50512 AT 50511
>seq14506
Length=85774
Score = 109 bits (120), Expect = 8e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || ||||||||||| ||||| || || || || || || ||
Sbjct 52173 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACTTTGGAGGTGGAGAGCTCG 52114
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| |||||| ||||| || || || || || ||||| |||
Sbjct 52113 GACACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCAA 52054
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||||| ||| || |||||| | |||||| | ||| | | || ||||||
Sbjct 52053 CAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGCACTCTTGCGGACTATAAT 51994
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| |||| || ||
Sbjct 51993 ATCCAGAAGGAGTCGACTCTGCA 51971
Score = 93.3 bits (102), Expect = 6e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || || ||||| ||||| || || | || || || ||
Sbjct 52629 ATGCAAATCTTTGTCAAGACCTTAACTGGGAAAACAATCACCCTTGAGGTAGAGAGCTCC 52570
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || || |||||||| ||||| ||||| |||||||| |||
Sbjct 52569 GACACTATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGCATTCCTCCAGATCAA 52510
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | | || | ||| || ||||||||||| ||| || || | |||| |||||
Sbjct 52509 CAACGTCTTATCTTTGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTGGCAGACTATAAC 52450
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| || ||| |||| ||||| || ||
Sbjct 52449 ATCCAGAAGGAGTCGACCCTTCACTTGGT 52421
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | ||||| |||||||||| || ||||| || || || || |||
Sbjct 52857 ATGCAAATCTTTGTGAAAACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGAGTTCC 52798
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || || || || || |||||||| || || ||||| || ||||| |||
Sbjct 52797 GACACAATCGACAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGATCAA 52738
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | |||| | ||| || ||||||||||| ||| || || | | || |||||
Sbjct 52737 CAACGGCTGATCTTTGCAGGAAAGCAGCTCGAGGATGGGAGGACCCTGGCTGACTATAAC 52678
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || ||||| || || | || | || ||||||
Sbjct 52677 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGACTCAGGGGCGGT 52630
>seq9952
Length=36685
Score = 86.0 bits (94), Expect = 9e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954
||||| ||| || ||||| || || |||||||| ||||| || || || || | ||
Sbjct 3841 AACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAGCAGAGGCTCATC 3782
Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG 156014
| |||||| ||||||||||||||| | | ||| | | ||||| || || || ||
Sbjct 3781 TTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAACATCCAGAAGGAA 3722
Query 156015 GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
| ||||| ||| | ||||| ||||| ||||| ||
Sbjct 3721 TCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731429244885200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |