Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq756 113 7e-20 seq14506 109 8e-19 seq9952 86.0 9e-12 >seq756 Length=57245 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||||||||||| ||||| || || || || || || || Sbjct 50692 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACCTTGGAGGTGGAGAGCTCG 50633 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| |||||| ||||| || || || || || ||||| ||| Sbjct 50632 GACACAATTGACAACGTGAAAGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCAA 50573 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || |||||| | |||||| | ||| | | || |||||| Sbjct 50572 CAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGTACTCTTGCGGACTATAAT 50513 Query 156003 AT 156004 || Sbjct 50512 AT 50511 >seq14506 Length=85774 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||||||||||| ||||| || || || || || || || Sbjct 52173 ATGCAGATATTTGTGAAGACATTGACTGGGAAAACAATAACTTTGGAGGTGGAGAGCTCG 52114 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| |||||| ||||| || || || || || ||||| ||| Sbjct 52113 GACACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCAGACCAA 52054 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || |||||| | |||||| | ||| | | || |||||| Sbjct 52053 CAGAGATTGATTTTTGCAGGGAAGCAGTTGGAAGATGGACGCACTCTTGCGGACTATAAT 51994 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| || || Sbjct 51993 ATCCAGAAGGAGTCGACTCTGCA 51971 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || || ||||| ||||| || || | || || || || Sbjct 52629 ATGCAAATCTTTGTCAAGACCTTAACTGGGAAAACAATCACCCTTGAGGTAGAGAGCTCC 52570 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || |||||||| ||||| ||||| |||||||| ||| Sbjct 52569 GACACTATTGACAATGTCAAGGCCAAGATACAAGACAAAGAGGGCATTCCTCCAGATCAA 52510 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || ||||||||||| ||| || || | |||| ||||| Sbjct 52509 CAACGTCTTATCTTTGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTGGCAGACTATAAC 52450 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| |||| ||||| || || Sbjct 52449 ATCCAGAAGGAGTCGACCCTTCACTTGGT 52421 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||||| || ||||| || || || || ||| Sbjct 52857 ATGCAAATCTTTGTGAAAACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGAGTTCC 52798 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || |||||||| || || ||||| || ||||| ||| Sbjct 52797 GACACAATCGACAATGTCAAGGCCAAGATACAAGACAAGGAGGGCATTCCCCCAGATCAA 52738 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| || ||||||||||| ||| || || | | || ||||| Sbjct 52737 CAACGGCTGATCTTTGCAGGAAAGCAGCTCGAGGATGGGAGGACCCTGGCTGACTATAAC 52678 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || ||||| || || | || | || |||||| Sbjct 52677 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGACTCAGGGGCGGT 52630 >seq9952 Length=36685 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155895 AACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATT 155954 ||||| ||| || ||||| || || |||||||| ||||| || || || || | || Sbjct 3841 AACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAGCAGAGGCTCATC 3782 Query 155955 TATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAG 156014 | |||||| ||||||||||||||| | | ||| | | ||||| || || || || Sbjct 3781 TTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAACATCCAGAAGGAA 3722 Query 156015 GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||| ||| | ||||| ||||| ||||| || Sbjct 3721 TCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731429244885200