Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq756 109 1e-18 seq247 104 5e-17 seq14506 100 6e-16 seq25669 96.9 7e-15 seq9952 96.9 7e-15 seq37694 91.5 3e-13 seq5564 91.5 3e-13 >seq756 Length=57245 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | || ||||||| ||| || ||||||||| || | Sbjct 50465 ACCACCACGAAGGCGAAGGACAAGGTGCAAAGTAGACTCCTTCTGGATATTATAGTCCGC 50524 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || ||| |||| ||||| || || || ||||| || ||||||||||| || || || Sbjct 50525 AAGAGTACGTCCATCTTCCAACTGCTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGCGG 50584 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| |||||| ||| || || || | || || || || Sbjct 50585 GATACCCTCCTTGTCTTGAATTTTAGCTTTCACGTTGTCAATTGTGTCCGAGCTCTCCAC 50644 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||||| ||||| ||||| || | |||||||||||| Sbjct 50645 CTCCAAGGTTATTGTTTTCCCAGTCAATGTCTTCACAAATATCTGCAT 50692 >seq247 Length=47399 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | ||| || || | || || ||| ||||| || Sbjct 34361 ATCCCACCCCTGAGACGAAGGACCAGATGCAAGGTGGATTCCTTCTGGATGTTATAGTCG 34420 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | || || ||||||||||| | || || ||||||||| Sbjct 34421 GCCAGGGTTCGGCCATCTTCAAGCTGCTTCCCAGCAAAGATCAGCCTTTGCTGATCAGGT 34480 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| |||||| || ||||| || ||| Sbjct 34481 GGGATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTATCGATTGAATCAGAGCTTTCC 34540 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||||| | ||| |||||||| Sbjct 34541 ACCTCAAGGGTGATTGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 34590 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | ||| | ||| || ||||||||| || Sbjct 33424 ATTCCACCCCGTAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCT 33483 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||| || ||||||||||| | || || || || || Sbjct 33484 GCAAGGGTCCGACCATCTTCAAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGA 33543 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || ||||| || || ||| || | || || |||| Sbjct 33544 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCT 33603 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| ||||| || ||||| | ||||| | ||| || |||||| Sbjct 33604 ACTTCCAGAGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATTTGCATT 33654 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||||| ||||| | || ||||| | ||| | ||| ||| || |||||||| || Sbjct 33197 ATTCCACCTCGCAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGA-ATATTATAGTC 33255 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | | || || |||| |||| || || || ||||| || | || || ||||||| Sbjct 33256 CGCAAGGGTCCGACCATCTTCCAGCTGCTTCCCTGCAAATATCAGCCTTTGCCGATCAGG 33315 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| |||||||| ||||| ||| ||||| || | || || || Sbjct 33316 AGGAATCCCTTCCTTATCTTG-ATTTTGGCTTTCACATTGTCGATTGTGTCAGAACTCTC 33374 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||||||||| || ||||| | || || | |||||||||||| Sbjct 33375 CACCTCCAAAGTAATGGTCTTGCCAGTAAGGGTCTTCACGAATATCTGCATT 33426 >seq14506 Length=85774 Score = 100 bits (110), Expect = 6e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||| || | || | || | ||| | ||| || ||||||||| || | Sbjct 51946 ACCACCACGAAGGCGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATATTATAGTCCGC 52005 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || ||| |||| ||||| || || || ||||| || ||||||||||| || || || Sbjct 52006 AAGAGTGCGTCCATCTTCCAACTGCTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGCGG 52065 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| |||||| || || || || | || || || || Sbjct 52066 GATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTGTCCGAGCTCTCCAC 52125 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || ||||| ||||| ||||| || | |||||||||||| Sbjct 52126 CTCCAAAGTTATTGTTTTCCCAGTCAATGTCTTCACAAATATCTGCAT 52173 >seq25669 Length=30460 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||||||||||||||| | |||||| | || |||| || || | || ||||||| || Sbjct 9185 GATATTATAATCAGAGAGGGTTCGTCCGTCCTCCAGCTGCTTCCGTGCGAAGATTAGCCT 9126 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| ||||| || | || || || || || | Sbjct 9125 CTGCTGATCAGGAGGAATCCCTTCCTTATCCTGATTCTTCGCCTTCACGTTGTCAATCGT 9066 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || |||||||| |||||||| || || || ||||| || || | || ||||| Sbjct 9065 ATCCGAACTCTCTACTTCCAGAGTAATCGTCTTCCCTGTTAACGTCTTCACGAAAATCTG 9006 Query 192534 CAT 192536 ||| Sbjct 9005 CAT 9003 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||||| | |||||| | || |||| || || || || ||||||| || Sbjct 853 GATATTATAATCAGCGAGGGTTCGTCCGTCCTCCAGCTGCTTCCCTGCGAAGATTAGCCT 912 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| ||||| || || || || || || || | Sbjct 913 CTGCTGATCAGGAGGAATCCCTTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGT 972 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || || ||||| || || || || || || || | |||||||| Sbjct 973 ATCCGAACTCTCCACCTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAATATCTG 1032 Query 192534 CAT 192536 ||| Sbjct 1033 CAT 1035 >seq9952 Length=36685 Score = 96.9 bits (106), Expect = 7e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||||| | |||||| | || |||| || || ||||| ||||||| || Sbjct 3047 GATATTATAATCAGCGAGGGTTCGTCCGTCCTCCAGCTGCTTCCCAGCGAAGATTAGCCT 3106 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| ||||| || || || || || || || | Sbjct 3107 CTGCTGATCAGGAGGAATCCCTTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGT 3166 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || || ||||| || ||||| || || || || | |||||||| Sbjct 3167 ATCCGAACTCTCCACCTCCAGCGTAATCGTCTTACCTGTCAAGGTCTTCACGAATATCTG 3226 Query 192534 CAT 192536 ||| Sbjct 3227 CAT 3229 >seq37694 Length=247 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | ||| | ||| || ||||||||| || | | || || |||| || Sbjct 3 ACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTCA 62 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||| || ||||||||||| | || || || || || || ||||| || || || || Sbjct 63 AGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGA 122 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| || || ||| || | || || ||||||||| ||||| ||||| || Sbjct 123 ATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTTT 182 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||||| | ||| || |||||| Sbjct 183 CCAGTGAGAGTTTTTACAAAGATTTGCATT 212 >seq5564 Length=26244 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || || | || ||||| | || | ||| || || ||||| || Sbjct 4890 ATACCACCCCTGAGCCGAAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCT 4831 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || |||| |||| || | || || ||||||||||| || ||||| ||||| || Sbjct 4830 GCCAAGGTTCTCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGG 4771 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || ||| ||||| || | || || || Sbjct 4770 GGAATTCCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCAATCGTGTCGGAGCTCTCA 4711 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || ||||||| || || | ||| |||||||| Sbjct 4710 ACCTCAAGTGTAATTGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 4661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983869537180950