Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq756 109 1e-18
seq247 104 5e-17
seq14506 100 6e-16
seq25669 96.9 7e-15
seq9952 96.9 7e-15
seq37694 91.5 3e-13
seq5564 91.5 3e-13
>seq756
Length=57245
Score = 109 bits (120), Expect = 1e-18
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | || ||||||| ||| || ||||||||| || |
Sbjct 50465 ACCACCACGAAGGCGAAGGACAAGGTGCAAAGTAGACTCCTTCTGGATATTATAGTCCGC 50524
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || ||| |||| ||||| || || || ||||| || ||||||||||| || || ||
Sbjct 50525 AAGAGTACGTCCATCTTCCAACTGCTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGCGG 50584
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || || ||||| |||||| ||| || || || | || || || ||
Sbjct 50585 GATACCCTCCTTGTCTTGAATTTTAGCTTTCACGTTGTCAATTGTGTCCGAGCTCTCCAC 50644
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | || || ||||| ||||| ||||| || | ||||||||||||
Sbjct 50645 CTCCAAGGTTATTGTTTTCCCAGTCAATGTCTTCACAAATATCTGCAT 50692
>seq247
Length=47399
Score = 104 bits (114), Expect = 5e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || ||||| | || | ||| || || | || || ||| ||||| ||
Sbjct 34361 ATCCCACCCCTGAGACGAAGGACCAGATGCAAGGTGGATTCCTTCTGGATGTTATAGTCG 34420
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||||| |||| || | || || ||||||||||| | || || |||||||||
Sbjct 34421 GCCAGGGTTCGGCCATCTTCAAGCTGCTTCCCAGCAAAGATCAGCCTTTGCTGATCAGGT 34480
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || || ||||| ||| |||||| || ||||| || |||
Sbjct 34481 GGGATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTATCGATTGAATCAGAGCTTTCC 34540
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || || || ||||| | ||||| | ||| ||||||||
Sbjct 34541 ACCTCAAGGGTGATTGTCTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 34590
Score = 96.9 bits (106), Expect = 7e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || ||||| | ||| | ||| || ||||||||| ||
Sbjct 33424 ATTCCACCCCGTAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCT 33483
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| || | ||| || ||||||||||| | || || || || ||
Sbjct 33484 GCAAGGGTCCGACCATCTTCAAGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGA 33543
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || || || ||||| || || ||| || | || || ||||
Sbjct 33544 GGGATTCCCTCCTTGTCCTGAATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCT 33603
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| ||||| ||||| || ||||| | ||||| | ||| || ||||||
Sbjct 33604 ACTTCCAGAGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATTTGCATT 33654
Score = 93.3 bits (102), Expect = 8e-14
Identities = 162/232 (70%), Gaps = 3/232 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365
|| ||||||| ||||| | || ||||| | ||| | ||| ||| || |||||||| ||
Sbjct 33197 ATTCCACCTCGCAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGA-ATATTATAGTC 33255
Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425
| | || || |||| |||| || || || ||||| || | || || |||||||
Sbjct 33256 CGCAAGGGTCCGACCATCTTCCAGCTGCTTCCCTGCAAATATCAGCCTTTGCCGATCAGG 33315
Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485
|| || ||||| |||||||| ||||| ||| ||||| || | || || ||
Sbjct 33316 AGGAATCCCTTCCTTATCTTG-ATTTTGGCTTTCACATTGTCGATTGTGTCAGAACTCTC 33374
Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | ||||||||| || ||||| | || || | ||||||||||||
Sbjct 33375 CACCTCCAAAGTAATGGTCTTGCCAGTAAGGGTCTTCACGAATATCTGCATT 33426
>seq14506
Length=85774
Score = 100 bits (110), Expect = 6e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||| || | || | || | ||| | ||| || ||||||||| || |
Sbjct 51946 ACCACCACGAAGGCGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATATTATAGTCCGC 52005
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || ||| |||| ||||| || || || ||||| || ||||||||||| || || ||
Sbjct 52006 AAGAGTGCGTCCATCTTCCAACTGCTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGCGG 52065
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || || ||||| |||||| || || || || | || || || ||
Sbjct 52066 GATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTGTCCGAGCTCTCCAC 52125
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | ||| || ||||| ||||| ||||| || | ||||||||||||
Sbjct 52126 CTCCAAAGTTATTGTTTTCCCAGTCAATGTCTTCACAAATATCTGCAT 52173
>seq25669
Length=30460
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||||||||||||||| | |||||| | || |||| || || | || ||||||| ||
Sbjct 9185 GATATTATAATCAGAGAGGGTTCGTCCGTCCTCCAGCTGCTTCCGTGCGAAGATTAGCCT 9126
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| |||||||| || || ||||| ||||| || | || || || || || |
Sbjct 9125 CTGCTGATCAGGAGGAATCCCTTCCTTATCCTGATTCTTCGCCTTCACGTTGTCAATCGT 9066
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || |||||||| |||||||| || || || ||||| || || | || |||||
Sbjct 9065 ATCCGAACTCTCTACTTCCAGAGTAATCGTCTTCCCTGTTAACGTCTTCACGAAAATCTG 9006
Query 192534 CAT 192536
|||
Sbjct 9005 CAT 9003
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||||||||||| | |||||| | || |||| || || || || ||||||| ||
Sbjct 853 GATATTATAATCAGCGAGGGTTCGTCCGTCCTCCAGCTGCTTCCCTGCGAAGATTAGCCT 912
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| |||||||| || || ||||| ||||| || || || || || || || |
Sbjct 913 CTGCTGATCAGGAGGAATCCCTTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGT 972
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || || || || || ||||| || || || || || || || | ||||||||
Sbjct 973 ATCCGAACTCTCCACCTCCAGCGTAATCGTCTTCCCTGTCAACGTCTTCACGAATATCTG 1032
Query 192534 CAT 192536
|||
Sbjct 1033 CAT 1035
>seq9952
Length=36685
Score = 96.9 bits (106), Expect = 7e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||||||||||| | |||||| | || |||| || || ||||| ||||||| ||
Sbjct 3047 GATATTATAATCAGCGAGGGTTCGTCCGTCCTCCAGCTGCTTCCCAGCGAAGATTAGCCT 3106
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| |||||||| || || ||||| ||||| || || || || || || || |
Sbjct 3107 CTGCTGATCAGGAGGAATCCCTTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGT 3166
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || || || || || ||||| || ||||| || || || || | ||||||||
Sbjct 3167 ATCCGAACTCTCCACCTCCAGCGTAATCGTCTTACCTGTCAAGGTCTTCACGAATATCTG 3226
Query 192534 CAT 192536
|||
Sbjct 3227 CAT 3229
>seq37694
Length=247
Score = 91.5 bits (100), Expect = 3e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|| ||||| | ||| | ||| || ||||||||| || | | || || |||| ||
Sbjct 3 ACCAAATGGAGAGTCGACTCCTTTTGGATATTATAGTCTGCAAGGGTCCGACCATCTTCA 62
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| ||| || ||||||||||| | || || || || || || ||||| || || || ||
Sbjct 63 AGTTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGA 122
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
||||| || || ||| || | || || ||||||||| ||||| ||||| ||
Sbjct 123 ATTTTTGCCTTCACGTTATCAATGGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTTT 182
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537
||||| | ||||| | ||| || ||||||
Sbjct 183 CCAGTGAGAGTTTTTACAAAGATTTGCATT 212
>seq5564
Length=26244
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| || || || | || ||||| | || | ||| || || ||||| ||
Sbjct 4890 ATACCACCCCTGAGCCGAAGGACCAAATGAAGGGTTGACTCCTTCTGAATGTTATAGTCT 4831
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || |||| |||| || | || || ||||||||||| || ||||| ||||| ||
Sbjct 4830 GCCAAGGTTCTCCCATCCTCAAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGG 4771
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || ||||| || || ||| ||||| || | || || ||
Sbjct 4770 GGAATTCCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCAATCGTGTCGGAGCTCTCA 4711
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || || ||||||| || || | ||| ||||||||
Sbjct 4710 ACCTCAAGTGTAATTGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 4661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 983869537180950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |