Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq756 109 1e-18 seq14506 100 5e-16 seq25669 89.7 9e-13 seq9952 89.7 9e-13 seq247 84.2 4e-11 >seq756 Length=57245 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || ||||||| ||| || |||||||| || | Sbjct 50465 ACCACCACGAAGGCGAAGGACAAGGTGCAAAGTAGACTCCTTCTGGATATTATAGTCCGC 50524 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| | || ||||| || || || |||||||| |||||||||||||| || || Sbjct 50525 AAGAGTACGTCCATCTTCCAACTGCTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGCGG 50584 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| |||||| ||| || || || || || || || || Sbjct 50585 GATACCCTCCTTGTCTTGAATTTTAGCTTTCACGTTGTCAATTGTGTCCGAGCTCTCCAC 50644 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || ||||| ||||| ||||| || | ||||||||||| Sbjct 50645 CTCCAAGGTTATTGTTTTCCCAGTCAATGTCTTCACAAATATCTGCAT 50692 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| ||||||||||| || ||||| |||||||| || || ||||| | Sbjct 51032 CGTCCTCTAGCTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCT 51091 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | || ||||| ||| || |||||| || || || || ||| || || || || | Sbjct 51092 TGTCCTGTATCTTAGCCTTGACATTATCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGA 51151 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || ||||| || | ||||| | ||| || ||||| Sbjct 51152 TTGTCTTACCGGTGAGAGTTTTCACGAAAATTTGCAT 51188 >seq14506 Length=85774 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || | ||| | ||| || |||||||| || | Sbjct 51946 ACCACCACGAAGGCGAAGGACAAGGTGCAGAGTCGACTCCTTCTGGATATTATAGTCCGC 52005 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| | || ||||| || || || |||||||| |||||||||||||| || || Sbjct 52006 AAGAGTGCGTCCATCTTCCAACTGCTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGCGG 52065 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| |||||| || || || || || || || || || Sbjct 52066 GATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTGTCCGAGCTCTCCAC 52125 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || ||||| ||||| ||||| || | ||||||||||| Sbjct 52126 CTCCAAAGTTATTGTTTTCCCAGTCAATGTCTTCACAAATATCTGCAT 52173 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| || ||||| ||||||||||| || ||||| ||||| ||||| Sbjct 52940 TGCTTTCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCCTGTATC 52999 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || |||||| || || || || ||| || || || || || || || || Sbjct 53000 TTAGCCTTCACATTATCAATGGTGTCAGAGCTTTCCACCTCAAGGGTTATTGTCTTTCCG 53059 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | ||| || ||||| Sbjct 53060 GTGAGAGTTTTCACGAAAATTTGCAT 53085 >seq25669 Length=30460 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| || | | |||| |||| |||| || || | || || |||| ||| Sbjct 9184 ATATTATAATCAGAGAGGGTTCGTCCGTCCTCCAGCTGCTTCCGTGCGAAGATTAGCCTC 9125 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || || ||||| ||||| || | || || || || || ||| Sbjct 9124 TGCTGATCAGGAGGAATCCCTTCCTTATCCTGATTCTTCGCCTTCACGTTGTCAATCGTA 9065 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || |||||||| |||||||| || || || ||||| || || | ||| |||||| Sbjct 9064 TCCGAACTCTCTACTTCCAGAGTAATCGTCTTCCCTGTTAACGTCTTCACGAAAATCTGC 9005 Query 172068 AT 172069 || Sbjct 9004 AT 9003 >seq9952 Length=36685 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | | | |||| |||| |||| || || ||||| || |||| ||| Sbjct 3048 ATATTATAATCAGCGAGGGTTCGTCCGTCCTCCAGCTGCTTCCCAGCGAAGATTAGCCTC 3107 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || || ||||| ||||| || || || || || || || ||| Sbjct 3108 TGCTGATCAGGAGGAATCCCTTCCTTATCCTGAATCTTCGCCTTCACGTTGTCAATCGTA 3167 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || ||||| || ||||| || || || || | |||||||||| Sbjct 3168 TCCGAACTCTCCACCTCCAGCGTAATCGTCTTACCTGTCAAGGTCTTCACGAATATCTGC 3227 Query 172068 AT 172069 || Sbjct 3228 AT 3229 >seq247 Length=47399 Score = 84.2 bits (92), Expect = 4e-11 Identities = 158/231 (68%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| || || | || ||||| | ||| | ||| || ||||||||| || Sbjct 33197 ATTCCACCTCGCAGACGGAGAACCAAATGGAGAGTCGACTCCTTTTGAATATTATAGTCC 33256 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| || || || ||||| || | || || | ||||| Sbjct 33257 GCAAGGGTCCGACCATCTTCCAGCTGCTTCCCTGCAAATATCAGCCTTTGCCGATCAGGA 33316 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| ||| ||||| || || || || || Sbjct 33317 GGAATCCCTTCCTTATCTTG-ATTTTGGCTTTCACATTGTCGATTGTGTCAGAACTCTCC 33375 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||||||||| || ||||| | || || | ||||||||||||| Sbjct 33376 ACCTCCAAAGTAATGGTCTTGCCAGTAAGGGTCTTCACGAATATCTGCATT 33426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904588426662600