Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq29747 122 3e-22 seq26816 118 3e-21 seq4403 116 1e-20 seq4900 107 6e-18 seq25823 96.9 1e-14 seq11108 96.9 1e-14 seq16871 95.1 4e-14 seq16343 93.3 1e-13 seq44006 87.8 5e-12 seq10930 87.8 5e-12 seq24159 84.2 6e-11 >seq29747 Length=83749 Score = 122 bits (134), Expect = 3e-22 Identities = 221/317 (70%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||||| ||||| || || | || |||| | ||||| || | | Sbjct 22277 CCAATTGCATCAATTTCATCAATAAATATGATACTTGGAGCACACTGTCTAGCTTCTTGA 22336 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || | ||||| | |||| |||| ||||||| |||| || | || |||||| || Sbjct 22337 AACAAGTTCCTTACTCTAGATGGACCAACACCAACAAACATCTCCATGAAATCAGAACCG 22396 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | ||| | ||| | ||| || ||| |||| | || ||||| ||||| Sbjct 22397 GA-AATCGACAAGAACGGCACAGCAGATTCCCCAGCTGTTGCCTTGGCTAGAAGGGTCTT 22455 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 || || || || || ||| |||| ||| | || ||||| | |||||| |||||| || Sbjct 22456 CCCAGTCCCCGGAGGACCCACTAAAAGAGCCCCTTTTGGAATTTTTGCTCCCAGC--TCT 22513 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| || | ||| |||| | || | ||| | ||| || ||| | |||||||| Sbjct 22514 TCATACTTTTTAGGATTCTTGAGGAAATGTACGAACTCCATAATTTCCTGCTTTGCCTCG 22573 Query 289327 TCACATCCTGCTACATC 289343 |||||||| || ||||| Sbjct 22574 TCACATCCAGCAACATC 22590 >seq26816 Length=22977 Score = 118 bits (130), Expect = 3e-21 Identities = 220/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| ||||||||||| || || | || ||||| | ||||| || | | Sbjct 13234 CCAATTGCATCGATTTCGTCAATAAATATGATACTCGGAGCACACTGTCTGGCTTCTTGA 13175 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || | ||||| | |||| |||| ||||||| |||| || | || |||||| | Sbjct 13174 AACAAGTTCCTTACTCTAGATGGACCAACACCAACAAACATCTCCATGAAATCAGAACCA 13115 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | || | || | ||| || ||| |||| | || ||||| ||||| Sbjct 13114 GA-AATCGATAAAAACGGCACTGCGGATTCCCCAGCTGTTGCCTTGGCTAGAAGGGTCTT 13056 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 || || || || || ||| |||| ||| |||| ||||| | |||||| |||||| || Sbjct 13055 CCCAGTCCCCGGAGGACCCACTAAAAGAGCTCCTTTTGGAATTTTTGCTCCCAGC--TCT 12998 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| || | ||| |||| | || | ||| | ||| || ||| | |||||||| Sbjct 12997 TCATACTTTTTAGGATTCTTGAGGAAATGTACGAACTCCATAATTTCTTGCTTTGCCTCG 12938 Query 289327 TCACATCCTGCTACATC 289343 |||||||| || ||||| Sbjct 12937 TCACATCCAGCAACATC 12921 >seq4403 Length=46028 Score = 116 bits (128), Expect = 1e-20 Identities = 213/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || ||||||||| || | || || | ||| || || ||||| ||||||||| Sbjct 18070 CATTATATCTTCCATAGCTTTCACTAGCCGCCTCTGTATGTATCCAGTCTCAGATGTTTT 18011 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || |||||||| ||||| | | ||| ||||||||||| || || | ||||| || Sbjct 18010 CACTGCAGTATCAATGAGACCCTCCCTACCTCCCATAGCATGAAAAAAGAACTCTTGAGG 17951 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | | || | | | ||| |||| || || || || || || || ||| Sbjct 17950 TGTCAATCCACGGAGGTATGAGTTCTCTACAAATCCTCGACTTTCAGGTCCATTGTCTTC 17891 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| |||||||| |||| ||||| | || | || ||||| || || || || ||||| Sbjct 17890 CTTTGTAAAGTGGGGCAAAGTCCTTTCAACAAAACCATATGGTATTCGTTTCCCTTCAAC 17831 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || ||||| |||| || | | |||| || || ||||| | | ||| || || || || Sbjct 17830 ATTTTGCTGACCCACACAAGCAGTCATTTGGGAGATATTAATAAAACTCCCTTTTGATCC 17771 Query 302865 AGCATTTACCAT 302876 ||| | ||||| Sbjct 17770 TGCAGTAACCAT 17759 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| |||| || || ||| || |||||||||| |||| ||||||||||| Sbjct 18823 GGGAACACCAAGGGTGACATTCT--TTGCACT-AACACCAGCATAGTGAAAAGTATTCAG 18767 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 ||| | ||||||| ||||| ||||| || || |||| ||||| |||||| || Sbjct 18766 AGTCATCTGAGTAGCAGGCTCTCCAATGGACTGCGCTGCAACACAACCAATCATTTCGCC 18707 Query 301950 TGGTGCTAC 301958 |||||| || Sbjct 18706 TGGTGCCAC 18698 >seq4900 Length=26258 Score = 107 bits (118), Expect = 6e-18 Identities = 274/409 (67%), Gaps = 11/409 (3%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 |||||||||||| | | | |||||| || || ||||| |||||||| ||| Sbjct 11617 AAATCCATCCATTTCTACCAGCAGTTGATTTAGGGTACTTTCCCGCTCATCATTACCACC 11676 Query 288999 TCTTGAATCACCCGAATCG-CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 || | |||| ||| | |||| || |||| |||||||||||||||||||| | Sbjct 11677 ACTGAAGCCACC----TCGGCCCCTTGCCTTGCCAATTGCATCAATTTCGTCAATGAATA 11732 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | | || |||| | || ||||| | ||| | | ||| || | || | |||| Sbjct 11733 TGATACTAGGAGCACACTGCCTCGCTTCTTGAAAGAGGTTTCTCACTCTAGACGGCCCAA 11792 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||| || | || || | || |||||| | || | | || | ||| | ||| | | Sbjct 11793 CTCCACCAAATATCTCCATGAAATCAGAACCAGAAA-TAGACAAGAAGGGCACACCAGAT 11851 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || ||| |||| | || ||||| ||||| || || ||||||||||| ||| ||| Sbjct 11852 TCCCCAGCTGTTGCCTTTGCTAGAAGGGTCTTCCCAGTCCCAGGTGGTCCAACTAGAAGA 11911 Query 289237 ACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATT 289294 | || ||||| | ||||| |||| | ||| ||| || | |||| || | | || | Sbjct 11912 GCACCTTTTGGAATCTTTGCTCCCA--ACTCTTCATACTTTTTAGGGTTCCTAAGGAAGT 11969 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| ||| || ||| | ||||| |||||||| ||||| ||||| Sbjct 11970 GAACAAACTCCATAATTTCTTGCTTTGCTTCATCACAGCCTGCAACATC 12018 >seq25823 Length=50596 Score = 96.9 bits (106), Expect = 1e-14 Identities = 220/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 289017 GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTT 289074 |||||| ||| | ||||| ||||||||||| |||| || | | ||||||| || Sbjct 44367 GCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATGCACGGAGCGTTC 44308 Query 289075 TGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCT 289134 | | |||| || || | || | ||| || || || || | ||||||| |||| || Sbjct 44307 TCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCAACAAACATCTCG 44248 Query 289135 ACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTC 289194 |||||||| || | |||| | || ||||| || || || || || | || | Sbjct 44247 ACAAATTCGGAGCCAGATATTGAAAAGAATGGAACGCCAGCCTCACCAGCAATGGCTTTA 44188 Query 289195 GCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT 289254 |||||||| ||||| || || || ||||| || | ||||| || || || | Sbjct 44187 GCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACCTTTCGGAATGCGA 44128 Query 289255 GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 || ||| | || || || ||||||| |||| | || || |||| |||| | || Sbjct 44127 GCTCCAACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACAACTTCCATGAAATCT 44068 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCA 289344 | ||||| |||||| ||| || |||||| Sbjct 44067 TGCTTTGCTTCATCAACTCCGGCAACATCA 44038 >seq11108 Length=39206 Score = 96.9 bits (106), Expect = 1e-14 Identities = 220/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 289017 GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTT 289074 |||||| ||| | ||||| ||||||||||| |||| || | | ||||||| || Sbjct 4793 GCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATGCACGGAGCGTTC 4852 Query 289075 TGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCT 289134 | | |||| || || | || | ||| || || || || | ||||||| |||| || Sbjct 4853 TCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCAACAAACATCTCG 4912 Query 289135 ACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTC 289194 |||||||| || | |||| | || ||||| || || || || || | || | Sbjct 4913 ACAAATTCGGAGCCAGATATTGAAAAGAATGGGACGCCAGCCTCACCAGCAATGGCTTTA 4972 Query 289195 GCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT 289254 |||||||| ||||| || || || ||||| || | ||||| || || || | Sbjct 4973 GCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACCTTTCGGAATGCGA 5032 Query 289255 GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCA 289314 || ||| | || || || ||||||| |||| | || || |||| |||| | || Sbjct 5033 GCTCCAACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACAACTTCCATGAAATCT 5092 Query 289315 TATTTTGCCTCATCACATCCTGCTACATCA 289344 | ||||| |||||| ||| || |||||| Sbjct 5093 TGCTTTGCTTCATCAACTCCGGCAACATCA 5122 >seq16871 Length=101674 Score = 95.1 bits (104), Expect = 4e-14 Identities = 166/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA--ATTG 289087 ||||| ||||||| ||| || ||||| || | | |||||| | || || ||| ||| Sbjct 75825 CCAACTGCATCAAGTTCATCGATGAATATAATAGACGGAGCAGATTTCCTGGCAGCATT- 75883 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | ||||| | || | |||||| |||||| ||||||| ||||||||| | Sbjct 75884 -AAACAGGTCTCTGATGCGTGCTGCTCCTCTTCCAACAAACATTTCCACAAATTCACTGG 75942 Query 289148 CGGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| || |||| |||| || ||||| ||||||||||| | ||||| | |||| Sbjct 75943 CGGAGACGCTGAAA-AATGGGACTCCGGCTTCTCCTGCTACTGCACGAGCCAGCAATGTC 76001 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAG 289261 || || || || || || || | || | || || | |||| |||||| ||||| Sbjct 76002 TTTCCCGTCCCCGGAGGACCAACCAACAATACACCTCTGGGTAGTTTTGCACCCAG 76057 >seq16343 Length=34314 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA--ATTG 289087 ||||| ||||||| |||||| ||||| || | | |||||| | || || ||| ||| Sbjct 30682 CCAACTGCATCAAGTTCGTCGATGAATATGATAGACGGAGCAGATTTCCTGGCAGCATT- 30740 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | ||||| | || | |||||| |||||| ||||||| ||||||||| | Sbjct 30741 -AAACAGATCTCTGATGCGTGCTGCTCCTCTTCCAACAAACATTTCCACAAATTCACTGG 30799 Query 289148 CGGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 |||| || |||| || | || ||||| ||||||||||| | ||||| | |||| Sbjct 30800 CGGAGACACTGAAA-AAGGGGACTCCAGCTTCTCCTGCTACTGCACGAGCCAGTAATGTC 30858 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || || || || || || || | || | || || | || | ||||||||| Sbjct 30859 TTTCCCGTCCCCGGAGGACCAACCAACAACACACCTCTGGGCAGTTTTGCCCC 30911 >seq44006 Length=395 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| |||| || || ||| || |||||||||| |||| ||||||||||| Sbjct 210 GGGAACACCAAGGGTGACATTCT--TTGCACT-AACACCAGCATAGTGAAAAGTATTCAG 266 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 ||| | ||||||| ||||| ||||| || || |||| ||||| |||||| || Sbjct 267 AGTCATCTGAGTAGCAGGCTCTCCAATGGACTGCGCTGCAACACAACCAATCATTTCGCC 326 Query 301950 TGGTGCTAC 301958 |||||| || Sbjct 327 TGGTGCCAC 335 >seq10930 Length=42611 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| |||| || || ||| || |||||||||| |||| ||||||||||| Sbjct 18322 GGGAACACCAAGGGTGACATTCT--TTGCACT-AACACCAGCATAGTGAAAAGTATTCAG 18266 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 ||| | ||||||| ||||| ||||| || || |||| ||||| |||||| || Sbjct 18265 AGTCATCTGAGTAGCAGGCTCTCCAATGGACTGCGCTGCAACACAACCAATCATTTCGCC 18206 Query 301950 TGGTGCTAC 301958 |||||| || Sbjct 18205 TGGTGCCAC 18197 >seq24159 Length=48948 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 18053 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 17994 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 17993 GGGAGCATTTTTTT 17980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470904945683789