Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021539.2 Length=38275 Score E Sequences producing significant alignments: (Bits) Value seq2 80.6 7e-11 >seq2 Length=12201 Score = 80.6 bits (88), Expect = 7e-11 Identities = 147/211 (70%), Gaps = 11/211 (5%) Strand=Plus/Plus Query 16515 ATCACTGTACACAATACGTACAATGATGCTACAGCACAAAATGAGACGGATTACTGTAAG 16574 || ||||| |||||||| || || |||||||||||| | || || || ||| || | Sbjct 5279 ATTACTGTCCACAATACTTATAACGATGCTACAGCAAATAACGAAGTGGCTTA---TATG 5335 Query 16575 AAC---AACAATAATGAAGT-TAGTTTCCATGTCGCAGTAGATGATAAAGAAGCTATTCA 16630 | || |||| |||| | ||||| || | || ||||| |||||||||||| | || Sbjct 5336 ATTCGTAATGATAACCAAGTATCGTTTC-ATATTGCGGTAGACGATAAAGAAGCTGTACA 5394 Query 16631 AGTCGTTCCTTTTAATAGAAATGCGTGGCACTGTGGCGATGGTGGAAATGGATATGGAAA 16690 || ||||||| | | || || ||||| || || |||||||| || | ||||| Sbjct 5395 AGGTATTCCTTTAGAGCGTAACGCTTGGCATTGCGGTGATGGTGG---CGGTAACGGAAA 5451 Query 16691 CAGGAATACCGTCGGTGTAGAAATCTGTTAC 16721 | || | | || || |||||||||||| Sbjct 5452 TCGTAAATCTATTGGAGTTGAAATCTGTTAC 5482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122288078868618