Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_021559.1
Length=179063
Score E
Sequences producing significant alignments: (Bits) Value
seq10156 289 3e-73
seq6213 260 2e-64
seq21559 228 9e-55
seq14731 185 1e-41
seq1192 170 2e-37
>seq10156
Length=9543
Score = 289 bits (320), Expect = 3e-73
Identities = 608/894 (68%), Gaps = 18/894 (2%)
Strand=Plus/Plus
Query 72332 TTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGG 72391
|| |||| ||||| || | ||| |||| ||||| | | || | |||| || |
Sbjct 538 TTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTG 597
Query 72392 GTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAA 72451
| ||| | | || || ||||| || || | |||||| | ||| |||| || |
Sbjct 598 GATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTA 657
Query 72452 TAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACG 72511
|||| || ||||| || || || ||||||||| | |||| || || ||||| ||||| |
Sbjct 658 TAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATG 717
Query 72512 GAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTA 72571
| ||||||| || || || || | ||||| | |||| | || |||||||||
Sbjct 718 GCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTC 777
Query 72572 GACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAG 72631
| |||||||||| | ||| | || ||| |||||||| | | ||||| ||||
Sbjct 778 GTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAG 837
Query 72632 CACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCT 72691
||||| | | || || |||| | ||| | | || ||| | ||||| || || |
Sbjct 838 CACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTT 897
Query 72692 CTGATGGTATGCCACTAGGTAT-CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 72750
|| |||||||||| |||| || ||| ||||| |||||||| ||| | | ||||| ||
Sbjct 898 CTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATGCT 956
Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC--AGGTATGTTCGGTG 72808
| |||||||| || |||||||| || || ||| || |||| | |||| || |||
Sbjct 957 TAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTAT--TCAGTG 1014
Query 72809 GTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAA 72868
| | || ||||| ||||| ||||| | || |||| | | || ||||| || |
Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074
Query 72869 CAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACA 72928
|||| || || | || | | || ||||| |||| |||||||| || || |
Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134
Query 72929 TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACT 72988
|| | ||||||||||| || || || ||| ||||| | ||||| ||||||||||
Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194
Query 72989 CTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGT--TAACCTC 73046
||||||| ||||| |||||| | || | |||||| || | |||| | | |
Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTCATGGCTTT 1254
Query 73047 AATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGT 73106
|| |||| | |||||||| |||||||| ||||||||||||||||| |||| || ||
Sbjct 1255 AA---GTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGT 1311
Query 73107 AGAT-GCAAACG--GAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCT 73163
||| | || | | | ||| || || |||| ||| || |||| | | ||| |
Sbjct 1312 TGATAGTGAAGGTCGCATAATT-AAC--ACTTGGGCTGATATTATTAATCGGGTTAACTT 1368
Query 73164 TGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217
||| ||||| |||||||||||| ||||| || || ||||| ||| ||||||
Sbjct 1369 TGGTATGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCTA-CCCTAGC 1421
>seq6213
Length=1415
Score = 260 bits (288), Expect = 2e-64
Identities = 570/852 (67%), Gaps = 49/852 (6%)
Strand=Plus/Plus
Query 72409 AACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTAT 72468
|| || || || |||||||| | |||| |||| | || ||| | || ||||| |
Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355
Query 72469 CCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTA 72528
|| || ||||||||||| | | || || ||||| ||||| || |||||||| || |
Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415
Query 72529 GTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 72588
|| || | ||||| | |||| | || ||||||||| | ||||||||||
Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475
Query 72589 TACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT---ATCT--- 72642
| | | ||| ||| | |||||| | ||| ||||| ||||| || || ||||
Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535
Query 72643 ---GCAGCATT--TG-------CAGT-------------------ATTCCTTG-TGTATC 72670
|| | || || || | ||| |||| | || |
Sbjct 536 ATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCTTGATCTACC 595
Query 72671 CATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACT 72730
|| |||| |||| | || | ||||||||||| |||| || || ||||| |||||||
Sbjct 596 CAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACT 654
Query 72731 TCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTG 72790
| ||| |||| ||||||| || |||||||| || |||||||| || || ||| ||| |
Sbjct 655 TTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCG 714
Query 72791 TAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCAT 72850
|||| | | ||||| || || ||||||| ||||| |||| | || ||||
Sbjct 715 TAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTTTA 774
Query 72851 CTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAG 72910
| | || || || || ||||| || || | || | || || ||||| |||
Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834
Query 72911 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 72970
| ||||||| ||||| ||| | ||||||||||| || || || |||| ||||| |
Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894
Query 72971 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 73030
||| ||||||||| |||||| ||||| |||||| | | | | ||||| | |
Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATAT 954
Query 73031 GTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 73090
|| | ||||| || || | ||||| | || ||||| | |||||| ||| |||||||
Sbjct 955 GTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAACT 1014
Query 73091 TCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACCAACA--TGGGGAGATGT 73145
|||| || | ||||| || | || ||| ||| | |||| |||| ||| |
Sbjct 1015 TCAATAAAAC---TGTAGTTG--ATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATAT 1069
Query 73146 TCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCC 73205
| ||||| | || |||||||| |||||||||||||||||| | ||||| || ||||||||
Sbjct 1070 TATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 1129
Query 73206 ACTAGACCTAGC 73217
|||||||||||
Sbjct 1130 TCTAGACCTAGC 1141
>seq21559
Length=2991
Score = 228 bits (252), Expect = 9e-55
Identities = 497/740 (67%), Gaps = 3/740 (0%)
Strand=Plus/Plus
Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294
|||||| ||||| |||| | ||||||||||||| | || |||| ||||||||||| ||
Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946
Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTCC 72353
|| ||||| | | | || | | |||| || |||||||| ||||| || || |
Sbjct 1947 ATAATCCCTACTTTATTGACCGTAAATT-TTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005
Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413
|||||| ||||| || || || ||||| || || ||| | | || || |||||
Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065
Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473
|| || | | ||| | ||| ||| | || | ||| || || || || || ||
Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125
Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533
||||||||||| |||| || || ||||| ||||| || || ||||| || || || |
Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185
Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593
| | |||| | |||| | || || |||||| | |||||||||| | |||
Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245
Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653
|| || ||| | |||||||| | | ||||| |||| ||||| | || || | |
Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305
Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713
| ||| | | || ||| | ||||| || || | |||||||||||| ||| ||
Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365
Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773
|| |||| |||||||| ||| | | |||||||| | | |||| || ||||||||
Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425
Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTC-GGTGGTAGTCTCTTCAGTGCAATGCACG 72832
|| || ||| || ||||| || | ||| | | | | | || |||| |||||
Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485
Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892
||| | | ||||| | | || || || || ||||| ||||| | || | |
Sbjct 2486 ATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAG 2545
Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952
|| ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || |
Sbjct 2546 ATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 2605
Query 72953 GTAGATTAATCTTCCAGTAT 72972
| |||| ||||| || |||
Sbjct 2606 GCCGATTGATCTTTCAATAT 2625
Score = 89.7 bits (98), Expect = 6e-13
Identities = 171/250 (68%), Gaps = 13/250 (5%)
Strand=Plus/Plus
Query 72979 TTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGG 73038
||||||||||||||||| ||||| |||||| | | | | |||| | || | |||
Sbjct 2680 TTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGG 2739
Query 73039 TTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAA 73098
|| || | | ||||| | || || || ||||| || |||| | ||||||||| |||
Sbjct 2740 TTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAA 2799
Query 73099 TCAGTTGTAGAT-GCAAACG-GAAAGATTGTACCAACATGGGGAGATGTT---------C 73147
| || || ||| | || | | | | | || || |||| ||| ||
Sbjct 2800 TATGTAGTTGATAGTGAAGGTGGCATAATTAAC--ACTTGGGCTGATATTATTAACTGGG 2857
Query 73148 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 73207
||||| | | ||| |||| ||||| |||||||||||| | ||||| || |||||||| |
Sbjct 2858 TTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTCCCTC 2917
Query 73208 TAGACCTAGC 73217
||| ||||||
Sbjct 2918 TAGGCCTAGC 2927
>seq14731
Length=28268
Score = 185 bits (204), Expect = 1e-41
Identities = 232/316 (73%), Gaps = 2/316 (1%)
Strand=Plus/Minus
Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960
||||| ||||| |||||||| ||||| ||||| | ||||||||| || || || |||
Sbjct 21129 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTTGGCCAATTG 21070
Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020
||||| || |||| |||||||||||||||| |||| |||||| | || | |
Sbjct 21069 ATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTAGCAGCTTGG 21010
Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080
|||||| | || | ||||| || | | | ||| | || ||||| |||||||| |||
Sbjct 21009 CCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTCAACCTAAAC 20950
Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 73139
| ||||||||||| ||||| || || ||| | || | | || || | ||||
Sbjct 20949 AGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAACA-CTTGGGC 20891
Query 73140 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAA 73199
|| || ||||| | || |||||||| |||||||||||||||||| | ||||| || ||
Sbjct 20890 TTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAA 20831
Query 73200 CTTCCCACTAGACCTA 73215
|||||| |||||||||
Sbjct 20830 CTTCCCTCTAGACCTA 20815
>seq1192
Length=17806
Score = 170 bits (188), Expect = 2e-37
Identities = 234/322 (73%), Gaps = 14/322 (4%)
Strand=Plus/Plus
Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960
||||| ||||| |||||||| ||||||||||| ||||||||||| || | || ||||
Sbjct 2342 TTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTCTGGCCGATTG 2401
Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020
| | | |||| ||||||||||||||||| ||||| |||||| | || | ||
Sbjct 2402 A---TAAAATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAGCAGCTTTG 2458
Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080
||| || | || | ||||| || | | ||||| | || ||||| |||||||| |||
Sbjct 2459 CCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTTTCAACCTAAAC 2517
Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACCAACA--T 73135
| ||||||||||| |||| ||||| || || | ||| ||| | |||| |
Sbjct 2518 AGGTTCAACTTCAATTAATC---TGTAGTTGATAATG--AAGGTTGCATAATTAACATTT 2572
Query 73136 GGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCAC 73195
||| ||| || |||| | || |||||||| || |||||| ||||||| | ||||| |
Sbjct 2573 GGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTAATGCTC 2632
Query 73196 ACAACTTCCCACTAGACCTAGC 73217
| |||||||| | |||||||||
Sbjct 2633 ATAACTTCCCTCCAGACCTAGC 2654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 572527032954760
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