Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq10156 289 3e-73 seq6213 260 2e-64 seq21559 228 9e-55 seq14731 185 1e-41 seq1192 170 2e-37 >seq10156 Length=9543 Score = 289 bits (320), Expect = 3e-73 Identities = 608/894 (68%), Gaps = 18/894 (2%) Strand=Plus/Plus Query 72332 TTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGG 72391 || |||| ||||| || | ||| |||| ||||| | | || | |||| || | Sbjct 538 TTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTG 597 Query 72392 GTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAA 72451 | ||| | | || || ||||| || || | |||||| | ||| |||| || | Sbjct 598 GATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTA 657 Query 72452 TAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACG 72511 |||| || ||||| || || || ||||||||| | |||| || || ||||| ||||| | Sbjct 658 TAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATG 717 Query 72512 GAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTA 72571 | ||||||| || || || || | ||||| | |||| | || ||||||||| Sbjct 718 GCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTC 777 Query 72572 GACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAG 72631 | |||||||||| | ||| | || ||| |||||||| | | ||||| |||| Sbjct 778 GTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAG 837 Query 72632 CACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCT 72691 ||||| | | || || |||| | ||| | | || ||| | ||||| || || | Sbjct 838 CACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTT 897 Query 72692 CTGATGGTATGCCACTAGGTAT-CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 72750 || |||||||||| |||| || ||| ||||| |||||||| ||| | | ||||| || Sbjct 898 CTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATGCT 956 Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC--AGGTATGTTCGGTG 72808 | |||||||| || |||||||| || || ||| || |||| | |||| || ||| Sbjct 957 TAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTAT--TCAGTG 1014 Query 72809 GTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAA 72868 | | || ||||| ||||| ||||| | || |||| | | || ||||| || | Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074 Query 72869 CAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACA 72928 |||| || || | || | | || ||||| |||| |||||||| || || | Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134 Query 72929 TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACT 72988 || | ||||||||||| || || || ||| ||||| | ||||| |||||||||| Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194 Query 72989 CTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGT--TAACCTC 73046 ||||||| ||||| |||||| | || | |||||| || | |||| | | | Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTCATGGCTTT 1254 Query 73047 AATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGT 73106 || |||| | |||||||| |||||||| ||||||||||||||||| |||| || || Sbjct 1255 AA---GTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGT 1311 Query 73107 AGAT-GCAAACG--GAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCT 73163 ||| | || | | | ||| || || |||| ||| || |||| | | ||| | Sbjct 1312 TGATAGTGAAGGTCGCATAATT-AAC--ACTTGGGCTGATATTATTAATCGGGTTAACTT 1368 Query 73164 TGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 ||| ||||| |||||||||||| ||||| || || ||||| ||| |||||| Sbjct 1369 TGGTATGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCTA-CCCTAGC 1421 >seq6213 Length=1415 Score = 260 bits (288), Expect = 2e-64 Identities = 570/852 (67%), Gaps = 49/852 (6%) Strand=Plus/Plus Query 72409 AACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTAT 72468 || || || || |||||||| | |||| |||| | || ||| | || ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 72469 CCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTA 72528 || || ||||||||||| | | || || ||||| ||||| || |||||||| || | Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 72529 GTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCA 72588 || || | ||||| | |||| | || ||||||||| | |||||||||| Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 72589 TACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGT---ATCT--- 72642 | | | ||| ||| | |||||| | ||| ||||| ||||| || || |||| Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 72643 ---GCAGCATT--TG-------CAGT-------------------ATTCCTTG-TGTATC 72670 || | || || || | ||| |||| | || | Sbjct 536 ATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCTTGATCTACC 595 Query 72671 CATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACT 72730 || |||| |||| | || | ||||||||||| |||| || || ||||| ||||||| Sbjct 596 CAATCGGGCAGGAAACTTTTT-TGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAACT 654 Query 72731 TCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTG 72790 | ||| |||| ||||||| || |||||||| || |||||||| || || ||| ||| | Sbjct 655 TTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCG 714 Query 72791 TAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCAT 72850 |||| | | ||||| || || ||||||| ||||| |||| | || |||| Sbjct 715 TAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTTTA 774 Query 72851 CTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAG 72910 | | || || || || ||||| || || | || | || || ||||| ||| Sbjct 775 GTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAAG 834 Query 72911 AAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGT 72970 | ||||||| ||||| ||| | ||||||||||| || || || |||| ||||| | Sbjct 835 AGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCAT 894 Query 72971 ATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCT 73030 ||| ||||||||| |||||| ||||| |||||| | | | | ||||| | | Sbjct 895 ATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATAT 954 Query 73031 GTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACT 73090 || | ||||| || || | ||||| | || ||||| | |||||| ||| ||||||| Sbjct 955 GTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAACT 1014 Query 73091 TCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACCAACA--TGGGGAGATGT 73145 |||| || | ||||| || | || ||| ||| | |||| |||| ||| | Sbjct 1015 TCAATAAAAC---TGTAGTTG--ATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATAT 1069 Query 73146 TCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCC 73205 | ||||| | || |||||||| |||||||||||||||||| | ||||| || |||||||| Sbjct 1070 TATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 1129 Query 73206 ACTAGACCTAGC 73217 ||||||||||| Sbjct 1130 TCTAGACCTAGC 1141 >seq21559 Length=2991 Score = 228 bits (252), Expect = 9e-55 Identities = 497/740 (67%), Gaps = 3/740 (0%) Strand=Plus/Plus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 |||||| ||||| |||| | ||||||||||||| | || |||| ||||||||||| || Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTCC 72353 || ||||| | | | || | | |||| || |||||||| ||||| || || | Sbjct 1947 ATAATCCCTACTTTATTGACCGTAAATT-TTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 72413 |||||| ||||| || || || ||||| || || ||| | | || || ||||| Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 || || | | ||| | ||| ||| | || | ||| || || || || || || Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 ||||||||||| |||| || || ||||| ||||| || || ||||| || || || | Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||| | |||| | || || |||||| | |||||||||| | ||| Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 || || ||| | |||||||| | | ||||| |||| ||||| | || || | | Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 | ||| | | || ||| | ||||| || || | |||||||||||| ||| || Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 || |||| |||||||| ||| | | |||||||| | | |||| || |||||||| Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTC-GGTGGTAGTCTCTTCAGTGCAATGCACG 72832 || || ||| || ||||| || | ||| | | | | | || |||| ||||| Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 ||| | | ||||| | | || || || || ||||| ||||| | || | | Sbjct 2486 ATTCCTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAG 2545 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 || ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || | Sbjct 2546 ATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTG 2605 Query 72953 GTAGATTAATCTTCCAGTAT 72972 | |||| ||||| || ||| Sbjct 2606 GCCGATTGATCTTTCAATAT 2625 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/250 (68%), Gaps = 13/250 (5%) Strand=Plus/Plus Query 72979 TTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGG 73038 ||||||||||||||||| ||||| |||||| | | | | |||| | || | ||| Sbjct 2680 TTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGTATCTGG 2739 Query 73039 TTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAA 73098 || || | | ||||| | || || || ||||| || |||| | ||||||||| ||| Sbjct 2740 TTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTCAATCAA 2799 Query 73099 TCAGTTGTAGAT-GCAAACG-GAAAGATTGTACCAACATGGGGAGATGTT---------C 73147 | || || ||| | || | | | | | || || |||| ||| || Sbjct 2800 TATGTAGTTGATAGTGAAGGTGGCATAATTAAC--ACTTGGGCTGATATTATTAACTGGG 2857 Query 73148 TTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCAC 73207 ||||| | | ||| |||| ||||| |||||||||||| | ||||| || |||||||| | Sbjct 2858 TTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTCCCTC 2917 Query 73208 TAGACCTAGC 73217 ||| |||||| Sbjct 2918 TAGGCCTAGC 2927 >seq14731 Length=28268 Score = 185 bits (204), Expect = 1e-41 Identities = 232/316 (73%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 ||||| ||||| |||||||| ||||| ||||| | ||||||||| || || || ||| Sbjct 21129 TTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTTGGCCAATTG 21070 Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020 ||||| || |||| |||||||||||||||| |||| |||||| | || | | Sbjct 21069 ATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTAGCAGCTTGG 21010 Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 |||||| | || | ||||| || | | | ||| | || ||||| |||||||| ||| Sbjct 21009 CCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTCAACCTAAAC 20950 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 73139 | ||||||||||| ||||| || || ||| | || | | || || | |||| Sbjct 20949 AGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAACA-CTTGGGC 20891 Query 73140 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAA 73199 || || ||||| | || |||||||| |||||||||||||||||| | ||||| || || Sbjct 20890 TTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAA 20831 Query 73200 CTTCCCACTAGACCTA 73215 |||||| ||||||||| Sbjct 20830 CTTCCCTCTAGACCTA 20815 >seq1192 Length=17806 Score = 170 bits (188), Expect = 2e-37 Identities = 234/322 (73%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 ||||| ||||| |||||||| ||||||||||| ||||||||||| || | || |||| Sbjct 2342 TTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATTCTGGCCGATTG 2401 Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020 | | | |||| ||||||||||||||||| ||||| |||||| | || | || Sbjct 2402 A---TAAAATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTAGCAGCTTTG 2458 Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 ||| || | || | ||||| || | | ||||| | || ||||| |||||||| ||| Sbjct 2459 CCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTTTCAACCTAAAC 2517 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACCAACA--T 73135 | ||||||||||| |||| ||||| || || | ||| ||| | |||| | Sbjct 2518 AGGTTCAACTTCAATTAATC---TGTAGTTGATAATG--AAGGTTGCATAATTAACATTT 2572 Query 73136 GGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCAC 73195 ||| ||| || |||| | || |||||||| || |||||| ||||||| | ||||| | Sbjct 2573 GGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTAATGCTC 2632 Query 73196 ACAACTTCCCACTAGACCTAGC 73217 | |||||||| | ||||||||| Sbjct 2633 ATAACTTCCCTCCAGACCTAGC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572527032954760