Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq13309 224 1e-52 seq26787 208 9e-48 seq12617 111 2e-18 seq16779 95.1 1e-13 seq5960 86.0 8e-11 >seq13309 Length=30306 Score = 224 bits (248), Expect = 1e-52 Identities = 226/294 (77%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || ||||||||||||||||| ||||| | | |||| ||||| ||| Sbjct 6070 GAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCCACCTGG 6011 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| |||||| || ||||| |||||||||||| |||||||| Sbjct 6010 ACCTCCTTCATGAACCTGCCGGCGAGATTCTCAAGGACGATGCCGTCGGATGCGGCGAAG 5951 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||||||| |||| ||||||||||||||| | | | | |||||||| Sbjct 5950 AAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTCCCAGTGGCGA 5891 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| ||| || ||||||||||| ||||||| ||||||||||| || |||||| Sbjct 5890 ACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCTTTCTTGTAC 5831 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 |||||||| | || |||| ||| ||||| | | || |||| |||||| Sbjct 5830 ATCTCCCAGATCTGAGGGTATTCGATTGGGAACATGCAGAATCGGTCTGGGTTG 5777 Score = 127 bits (140), Expect = 2e-23 Identities = 192/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| ||||| |||| | || ||||| | ||||||||| Sbjct 6349 CCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCCGCGCTTC 6290 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || || | |||||| || || ||||| ||||| || || ||| ||| || Sbjct 6289 TTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCAGGCGAAC 6230 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | || |||| |||||||||| || ||| || || |||||| |||| |||||| Sbjct 6229 GCAATCAGCCTCTCGGCAAAGCACTC----CCCGCC--GTCGATCCATTTCAACGCCCAC 6176 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 | ||||| ||| ||| | || | ||||||||| || || || || || ||||| Sbjct 6175 TGCGCCTTCTTCGCCACGCAAGGAATCGTGTCGATTGCACGGAACAGACGGCTTTTTTCT 6116 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||||||| ||||| |||| |||||| Sbjct 6115 TTCGAATCCTTGATGTAGGTCTCGAGCAGGAG 6084 >seq26787 Length=21907 Score = 208 bits (230), Expect = 9e-48 Identities = 195/248 (79%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| |||||||| || ||||||||||||||||| ||||| | | |||| || || ||| Sbjct 16598 GAGTGAATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGG 16657 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||| |||| |||||| || |||||| |||||||||||| ||||||||| Sbjct 16658 ACCTCCTTCATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 16717 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||||||| |||| ||||||||||||||| | | | | |||||||| Sbjct 16718 AAGGCGAGGACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTCCCAGTGGCGA 16777 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| ||| || ||||||||||| ||||||| ||||| || || || |||||| Sbjct 16778 ACGTCCTGAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCTTTCTTGTAC 16837 Query 869873 ATCTCCCA 869880 |||||||| Sbjct 16838 ATCTCCCA 16845 >seq12617 Length=25226 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||||||| | | || | || |||||||||||||||||||| | | || Sbjct 8247 GCTTGGCGAGTTCGCCGGGGAGGACTAATCGGACGGCGGTCTGGATCTCGCGGGAGGTGA 8188 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || | | || || ||| |||| | Sbjct 8187 TGGTGGGCTTCTTGTTGTAGCGGGCGAGTCTGGAGGATTCCTGAGCGAGCTTCTCGAAGA 8128 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| | ||| | |||| ||||||| || | |||||||| Sbjct 8127 TGTCGTTGATGAAGGAGTTCATGATCCCCATGGCCTTGCTGGAGATTCCGATGTCGGGGT 8068 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||||||||||| |||||| ||||| Sbjct 8067 GGACCTGCTTGAGAACCTTGAAGATG 8042 Score = 91.5 bits (100), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||||| | ||||| |||| ||||||| || | | Sbjct 1152 TCGAAGATGTCGTTGATGAAGGAGTTCATGATCCCCATCGCCTTGCTGGAGATTCCGATG 1093 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 || ||||| ||||||||||| |||||| ||||| Sbjct 1092 TCCGGGTGGACCTGCTTGAGAACCTTGAAGATG 1060 Score = 91.5 bits (100), Expect = 2e-12 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| ||| | | | || || ||||| ||||||||||| | | | || Sbjct 15254 GCTTGGCGAGTTCACCGGGGAGCACCAATCGGACGGCAGTCTGGATCTCCCTGGAGGTGA 15195 Query 1254403 TCGTGTTGCG-CTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC 1254461 | || | || |||||| || | ||||| | | | ||| ||| |||| Sbjct 15194 TAGT-TGGCTTCTTGTTGTAGCGAGCCAGCCTGGATGACTCCTGAGCGAGCTTCTCGAAG 15136 Query 1254462 ATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 |||||||||| || |||||||||| | ||| | |||| ||||||| || | ||| ||| Sbjct 15135 ATGTCGTTGATGAAGGAGTTCATGATCCCCATGGCCTTGCTGGAGATTCCGATGTCCGGG 15076 Query 1254522 TGCACCTGCTTGAGCACCTTGTAGATG 1254548 || ||||||||||| |||||| ||||| Sbjct 15075 TGGACCTGCTTGAGAACCTTGAAGATG 15049 >seq16779 Length=12596 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| ||| | |||||| | |||| ||| | ||| | ||||||| || Sbjct 5064 GCGGCTAACTATCTCAATATCAAGGGTTTGCTGGATTTGACCTGCCAAACTGTGGCTGAC 5123 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||| ||||||||| | || |||||||||||||||||||| ||||||||| ||| Sbjct 5124 ATGATTAAGGGCAAGACTCCTGAGGAGATCCGCAAGACCTTCAACATCAAGAACG 5178 >seq5960 Length=17084 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| | || ||| | ||| | ||||||| || Sbjct 5884 GCGGCTAACTATCTGAACATCAAGGGATTACTGGATTTGACCTGCCAAACTGTGGCTGAC 5943 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||| ||||||||| | || |||||||||||||||||||| ||||||||| ||| Sbjct 5944 ATGATTAAGGGCAAGACTCCTGAGGAGATCCGCAAGACCTTCAACATCAAGAACG 5998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103167515536849