Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021865.1 Length=41294 Score E Sequences producing significant alignments: (Bits) Value seq2 190 5e-44 >seq2 Length=12201 Score = 190 bits (210), Expect = 5e-44 Identities = 321/458 (70%), Gaps = 14/458 (3%) Strand=Plus/Plus Query 14189 AAGGAGAAGCCCAATGATGGAAATCAGACAGATGCTAGTAGGACCTAGCAAATATGGCAT 14248 ||||||| | ||| |||||||||||| | | |||| | | ||||||||||| | Sbjct 5188 AAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGTAC 5247 Query 14249 CAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTTCACAATACCTATAATGATGC 14308 || || || ||| |||| || ||| ||||| | |||||||| ||||| ||||| Sbjct 5248 TAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGATGC 5307 Query 14309 CCCAGCAGAAAATGAGATTCGC-TATATGATCGGGAACAATAACGAGGTTTCGTTCCACG 14367 ||||| | || || | | || |||||||| | || ||||| | || ||||| || Sbjct 5308 TACAGCAAATAACGA-AGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCATA 5366 Query 14368 TTGCTGTGGACGATATGGAAGCTGTTCAGGGCATTCCTTTTGATCGAAATGCCTGGCATT 14427 |||| || ||||||| |||||||| || || |||||||| || || || || ||||||| Sbjct 5367 TTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCATT 5426 Query 14428 GCGGAGACGGGAACGGAACAGGAAACCGTCAGTCCATCGGCGTAGAGATTTGTTA--CTC 14485 |||| || || ||| | ||||| ||| | || || || || || || ||||| ||| Sbjct 5427 GCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTC 5486 Query 14486 TAAGTCCGGCGGCAACCGCTATTACAAAGCAGAAGACCATGCGGCTATTATCATTGCCCA 14545 ||||| || || | || ||||| ||||| || || |||| ||||| || | || Sbjct 5487 TAAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGG 5544 Query 14546 GCTTATGAAACAGTTTTGTATTCCTATTGGAAATGTGGTTCCGCAC-CAGCA---CTGGA 14601 ||| |||||||||| |||||| ||| | || | | ||||| || || |||| Sbjct 5545 GCTCATGAAACAGTACAATATTCCAATTAGTAAAG----TTCGCACACATCAATCATGGA 5600 Query 14602 GTGGTAAATACTGCCCGCACAGAATGTTAGATGAGGGA 14639 |||| || || || || || | ||||||| || ||| Sbjct 5601 GTGGAAAGTATTGTCCTCATCGTATGTTAGCAGAAGGA 5638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131943326667984