Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_021865.1
Length=41294
Score E
Sequences producing significant alignments: (Bits) Value
seq2 190 5e-44
>seq2
Length=12201
Score = 190 bits (210), Expect = 5e-44
Identities = 321/458 (70%), Gaps = 14/458 (3%)
Strand=Plus/Plus
Query 14189 AAGGAGAAGCCCAATGATGGAAATCAGACAGATGCTAGTAGGACCTAGCAAATATGGCAT 14248
||||||| | ||| |||||||||||| | | |||| | | ||||||||||| |
Sbjct 5188 AAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGTAC 5247
Query 14249 CAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTTCACAATACCTATAATGATGC 14308
|| || || ||| |||| || ||| ||||| | |||||||| ||||| |||||
Sbjct 5248 TAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGATGC 5307
Query 14309 CCCAGCAGAAAATGAGATTCGC-TATATGATCGGGAACAATAACGAGGTTTCGTTCCACG 14367
||||| | || || | | || |||||||| | || ||||| | || ||||| ||
Sbjct 5308 TACAGCAAATAACGA-AGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCATA 5366
Query 14368 TTGCTGTGGACGATATGGAAGCTGTTCAGGGCATTCCTTTTGATCGAAATGCCTGGCATT 14427
|||| || ||||||| |||||||| || || |||||||| || || || || |||||||
Sbjct 5367 TTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCATT 5426
Query 14428 GCGGAGACGGGAACGGAACAGGAAACCGTCAGTCCATCGGCGTAGAGATTTGTTA--CTC 14485
|||| || || ||| | ||||| ||| | || || || || || || ||||| |||
Sbjct 5427 GCGGTGATGGTGGCGGTAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTC 5486
Query 14486 TAAGTCCGGCGGCAACCGCTATTACAAAGCAGAAGACCATGCGGCTATTATCATTGCCCA 14545
||||| || || | || ||||| ||||| || || |||| ||||| || | ||
Sbjct 5487 TAAGT--GGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGG 5544
Query 14546 GCTTATGAAACAGTTTTGTATTCCTATTGGAAATGTGGTTCCGCAC-CAGCA---CTGGA 14601
||| |||||||||| |||||| ||| | || | | ||||| || || ||||
Sbjct 5545 GCTCATGAAACAGTACAATATTCCAATTAGTAAAG----TTCGCACACATCAATCATGGA 5600
Query 14602 GTGGTAAATACTGCCCGCACAGAATGTTAGATGAGGGA 14639
|||| || || || || || | ||||||| || |||
Sbjct 5601 GTGGAAAGTATTGTCCTCATCGTATGTTAGCAGAAGGA 5638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 131943326667984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |