Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq9952 107 2e-18
seq25669 95.1 1e-14
seq5564 91.5 1e-13
>seq9952
Length=36685
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| || || || |||| ||| | |
Sbjct 3913 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGTTCC 3854
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||||| | || ||| ||||| ||||| |||||| | || ||| ||
Sbjct 3853 GATACCATCGGCAACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAG 3794
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || || || | ||| || || ||||| || |||| | | || |||| |||||||||
Sbjct 3793 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAAC 3734
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || ||||||||| | || ||||||| ||| || |||| ||
Sbjct 3733 ATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687
Score = 82.4 bits (90), Expect = 6e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329
||||| || || |||||||| | |||||||| ||||| ||| |||| || |||| ||
Sbjct 4141 ATGCAGATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 4082
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| || ||| | | || || ||||| ||||| |||||| | || |||
Sbjct 4081 GAC---ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 4025
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || || || | || || || ||||| ||||| | | | || | || ||||||
Sbjct 4024 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACTCTAGCTGATTAC 3965
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || ||||| || | ||| ||||| | || || |||| ||
Sbjct 3964 AACATCCAGAAGGAATCGACTCTCCACTTGGTGCTGCGATTGAGAGGAGG 3915
>seq25669
Length=30460
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || ||||| || | |||||||| || ||||| |||| ||| | |
Sbjct 1719 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTTGAGAGTTCC 1660
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| ||| | | || || ||||| ||||| ||||| | || ||||||
Sbjct 1659 GATACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 1600
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
| || || || | ||| || || ||||| ||||||| | | || | ||||||||||||
Sbjct 1599 CGGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTAGCGGATTACAAC 1540
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || ||||||||| | || ||||| | || || |||| ||
Sbjct 1539 ATCCAGAAGGAATCTACGCTTCATCTGGTGCTGCGATTGAGAGGAGG 1493
>seq5564
Length=26244
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329
||||||||||| || ||||| | ||||| || || || ||| |||| | ||| ||
Sbjct 4205 ATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTTGAAAGCTCT 4264
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
||| ||| ||| | | || ||| ||||| ||||| || ||| | || |||
Sbjct 4265 GAC---ACTATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGCATTCCACCAGAT 4321
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| ||| ||||||| | ||| || || ||||| ||||||| ||||| |||| || ||
Sbjct 4322 CAGCAACGACTTATCTTTGCAGGAAAGCAGCTTGAGGATGGGAGAACCTTGGCTGACTAT 4381
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481
||||| || || || ||||| | ||| ||||
Sbjct 4382 AACATCCAGAAGGAGTCTACCCTTCACTTGGT 4413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412598090155721
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |