Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9952 107 2e-18 seq25669 95.1 1e-14 seq5564 91.5 1e-13 >seq9952 Length=36685 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| || || || |||| ||| | | Sbjct 3913 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGTTCC 3854 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||||| | || ||| ||||| ||||| |||||| | || ||| || Sbjct 3853 GATACCATCGGCAACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAG 3794 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||| || |||| | | || |||| ||||||||| Sbjct 3793 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAAC 3734 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||||||| | || ||||||| ||| || |||| || Sbjct 3733 ATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGC-CT 110329 ||||| || || |||||||| | |||||||| ||||| ||| |||| || |||| || Sbjct 4141 ATGCAGATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 4082 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || ||||| ||||| |||||| | || ||| Sbjct 4081 GAC---ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 4025 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | || || || ||||| ||||| | | | || | || |||||| Sbjct 4024 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACTCTAGCTGATTAC 3965 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| || | ||| ||||| | || || |||| || Sbjct 3964 AACATCCAGAAGGAATCGACTCTCCACTTGGTGCTGCGATTGAGAGGAGG 3915 >seq25669 Length=30460 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| || ||||| |||| ||| | | Sbjct 1719 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATTACTCTCGAGGTTGAGAGTTCC 1660 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| ||||| | || |||||| Sbjct 1659 GATACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 1600 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 | || || || | ||| || || ||||| ||||||| | | || | |||||||||||| Sbjct 1599 CGGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTAGCGGATTACAAC 1540 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||||||| | || ||||| | || || |||| || Sbjct 1539 ATCCAGAAGGAATCTACGCTTCATCTGGTGCTGCGATTGAGAGGAGG 1493 >seq5564 Length=26244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-CT 110329 ||||||||||| || ||||| | ||||| || || || ||| |||| | ||| || Sbjct 4205 ATGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTTGAAAGCTCT 4264 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | | || ||| ||||| ||||| || ||| | || ||| Sbjct 4265 GAC---ACTATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGCATTCCACCAGAT 4321 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| ||||||| | ||| || || ||||| ||||||| ||||| |||| || || Sbjct 4322 CAGCAACGACTTATCTTTGCAGGAAAGCAGCTTGAGGATGGGAGAACCTTGGCTGACTAT 4381 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || ||||| | ||| |||| Sbjct 4382 AACATCCAGAAGGAGTCTACCCTTCACTTGGT 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412598090155721