Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 >seq2 Length=12201 Score = 179 bits (198), Expect = 4e-40 Identities = 225/306 (74%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 107213 TCTGCTTTACGATATCTGTCTCCACCACTTAGAGAGTAGCAGATTTCAATTCCGATAGAC 107272 || |||||| ||||| |||||||||||||||||||| |||||||||| ||| ||||| Sbjct 5517 TCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCCAATAGAT 5458 Query 107273 TTCATATTACCGTTTCCAGTTCCATCTCCACAATGCCAAGCATTACGGTTTGTAGGGATA 107332 || ||| ||||| || ||||| || ||||||||||| ||||| | | ||| ||| Sbjct 5457 TTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAAAGGAATA 5398 Query 107333 CCTTGAACAACTTCGAAATCATCAACTGCAAAATGGAATGA-AGTAGCATTACTGTTTGT 107391 ||||| ||| |||| ||| || || |||| ||| || || | | | ||| || Sbjct 5397 CCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGATACTTG-GTTATCATTACG 5339 Query 107392 AATCATGTACTGCACCTCGTTATTCGCACTTGCATCATTGTAAGTATTGTGGATAGTAAT 107451 |||||| || ||| |||||||| || | ||||| || ||||||||||||| |||||| Sbjct 5338 AATCATATAAGCCACTTCGTTATTTGCTGTAGCATCGTTATAAGTATTGTGGACAGTAAT 5279 Query 107452 GTATTCTGCTGTCATAGTGTTAGGACACTTTAAGCTGTACTTACTTGAATCCACCAATTT 107511 | |||||| |||| || | ||| ||||| | || || |||| ||| || || || Sbjct 5278 GAATTCTGGATTCATTGTATAAGGGCACTTAGTACCATATTTGCTTGCATCAACTAAATT 5219 Query 107512 TTGTCT 107517 || ||| Sbjct 5218 TTTTCT 5213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539948353764320