Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_023007.1
Length=168876
Score E
Sequences producing significant alignments: (Bits) Value
seq2 179 4e-40
>seq2
Length=12201
Score = 179 bits (198), Expect = 4e-40
Identities = 225/306 (74%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 107213 TCTGCTTTACGATATCTGTCTCCACCACTTAGAGAGTAGCAGATTTCAATTCCGATAGAC 107272
|| |||||| ||||| |||||||||||||||||||| |||||||||| ||| |||||
Sbjct 5517 TCCGCTTTATAATATCGATCTCCACCACTTAGAGAGTAACAGATTTCAACTCCAATAGAT 5458
Query 107273 TTCATATTACCGTTTCCAGTTCCATCTCCACAATGCCAAGCATTACGGTTTGTAGGGATA 107332
|| ||| ||||| || ||||| || ||||||||||| ||||| | | ||| |||
Sbjct 5457 TTACGATTTCCGTTACCGCCACCATCACCGCAATGCCAAGCGTTACGCTCTAAAGGAATA 5398
Query 107333 CCTTGAACAACTTCGAAATCATCAACTGCAAAATGGAATGA-AGTAGCATTACTGTTTGT 107391
||||| ||| |||| ||| || || |||| ||| || || | | | ||| ||
Sbjct 5397 CCTTGTACAGCTTCTTTATCGTCTACCGCAATATGAAACGATACTTG-GTTATCATTACG 5339
Query 107392 AATCATGTACTGCACCTCGTTATTCGCACTTGCATCATTGTAAGTATTGTGGATAGTAAT 107451
|||||| || ||| |||||||| || | ||||| || ||||||||||||| ||||||
Sbjct 5338 AATCATATAAGCCACTTCGTTATTTGCTGTAGCATCGTTATAAGTATTGTGGACAGTAAT 5279
Query 107452 GTATTCTGCTGTCATAGTGTTAGGACACTTTAAGCTGTACTTACTTGAATCCACCAATTT 107511
| |||||| |||| || | ||| ||||| | || || |||| ||| || || ||
Sbjct 5278 GAATTCTGGATTCATTGTATAAGGGCACTTAGTACCATATTTGCTTGCATCAACTAAATT 5219
Query 107512 TTGTCT 107517
|| |||
Sbjct 5218 TTTTCT 5213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539948353764320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |