Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq9952 104 2e-17 seq26443 89.7 4e-13 seq9418 89.7 4e-13 >seq9952 Length=36685 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || || || |||| ||| | | Sbjct 3913 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGTTCC 3854 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||||| | || ||| ||||| || || |||||| | || ||| ||| Sbjct 3853 GATACCATCGGCAACGTTAAAGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGAGCAG 3794 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| || || | | || |||| || |||||| Sbjct 3793 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGGCTGATTACAAC 3734 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||| |||||| | || |||||||||||||| |||| || Sbjct 3733 ATCCAGAAGGAATCTACGCTCCATCTGGTGTTGAGATTGAGAGGAGG 3687 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||| | || || || || || || | ||| ||| | Sbjct 3457 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATAACTCTGGAAGTCGAGAGTTCT 3398 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| ||||| || || | || ||| ||| Sbjct 3397 GATACGATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATTCCACCGGACCAG 3338 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || || || |||||||| |||| | || | ||||| |||||| Sbjct 3337 CAGAGGCTTATCTTCGCCGGGAAGCAGCTGGAAGACGGAAGGACGCTTGCGGATTACAAC 3278 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| ||| | ||| | ||| Sbjct 3277 ATTCAAAAGGAGTCGACGCTCCACCTTGTG 3248 >seq26443 Length=10536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || ||||| ||||| ||| | || |||| | Sbjct 9275 ATGCAAATCTTTGTGAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTGGAGAGCAGT 9216 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || || || | ||| ||| ||| Sbjct 9215 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 9156 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || ||||| |||||||| |||| | || |||| || |||||| Sbjct 9155 CAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGTACCTTGGCCGATTACAAC 9096 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| ||||||||||| Sbjct 9095 ATTCAGAAGGAGTCTAC 9079 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| || | || ||||| ||||| ||| | || |||| || Sbjct 9047 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGC 8988 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || || || || || ||||| | || ||| ||| Sbjct 8987 GACACCATTGACAATGTCAAGGCCAAAATCCAAGACAAGGAAGGGATACCACCGGACCAG 8928 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||| ||||||||||||| || || |||||||||||||| Sbjct 8927 CAGAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCAGGACTCTGGCGGACTACAAC 8868 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||| || || Sbjct 8867 ATCCAGAAGGAATCAAC 8851 >seq9418 Length=21897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| ||||| ||| | || |||| || Sbjct 11552 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCAGC 11611 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || ||||| || | || ||||||| Sbjct 11612 GACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGAATCCCACCGGATCAG 11671 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || || || |||||||| |||| | || |||| ||||||||| Sbjct 11672 CAGAGGCTTATCTTCGCCGGAAAGCAGCTGGAAGACGGCCGCACCTTGGCCGACTACAAC 11731 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 11732 ATACAGAAGGAGTCGAC 11748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || ||||| ||||| ||| | || |||| || Sbjct 11096 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCAGC 11155 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || ||| ||||| || || ||||| | || ||| ||| Sbjct 11156 GACACCATCGACAACGTGAAAGCTAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAG 11215 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || |||||||| |||| | || |||| || |||||| Sbjct 11216 CAGAGGCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGCCGTACTTTGGCCGATTACAAC 11275 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| ||||| || || Sbjct 11276 ATTCAGAAGGAATCAAC 11292 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||||| || ||||| || ||||| | ||| ||| || Sbjct 10868 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACGATTACTTTGGAAGTCGAGAGCAGC 10927 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || ||||| | || ||||||| Sbjct 10928 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCTCCGGATCAG 10987 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || || || ||||| ||||||| | || |||| || ||||| Sbjct 10988 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGTACCTTGGCCGATTACAAT 11047 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| ||||||||||| |||| Sbjct 11048 ATTCAGAAGGAGTCTACCCTGCA 11070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398641527131533