Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6888 84.2 3e-11 seq5564 84.2 3e-11 >seq6888 Length=12617 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || |||| || || ||||| || | || || ||| | || Sbjct 7437 TGCAAATCTTCGTCAAGACTCTAACCGGCAAGACAATCACCTTGGAGGTTGAAAGTTCCG 7378 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| ||| || || || ||| || ||||| || || || || | Sbjct 7377 ACACTATTGATAATGTCAAACCCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGC 7318 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 |||| ||||| ||||| || ||||||||||| || Sbjct 7317 AAAGGCTCATCTTTGCGGGCAAACAATTAGAAGA 7284 >seq5564 Length=26244 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | ||||| | || ||||| ||||| || | || || ||| | Sbjct 4206 TGCAAATATTCGTGAAAACCCTCACCGGAAAGACAATCACCCTCGAGGTTGAAAGCTCTG 4265 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||| ||| || || || || || ||||||||||| ||||| | Sbjct 4266 ACACTATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAGC 4325 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || |||| || |||||||| || || | || ||| ||||| || | || ||||| | Sbjct 4326 AACGACTTATCTTTGCAGGAAAGCAGCTTGAGGATGGGAGAACCTTGGCTGACTATAACA 4385 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 4386 TCCAGAAGGAGTCTAC 4401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785690798809240