Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_023501.1 Length=159590 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 >seq2 Length=12201 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 4171 GGTAACCGTAACTCTATCGGTGTAGAAATCTGTTACTCTATGAGTGGTGGAGAGCGTTAC 4230 || || ||||| ||||| || || ||||||||||||||| | ||||||||||| || || Sbjct 5447 GGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTCTCTAAGTGGTGGAGATCGATAT 5506 Query 4231 CGTAAAGCTGAGTTGAAT---GCTATCGAGCATATCTCTGACTTAATGGTACGATTCAAT 4287 |||||| ||| ||| ||||||| | || ||| | ||| || | |||| Sbjct 5507 TATAAAGCGGAGGATAATGCAGCTATCG-TCGTA--GCTGGGCTCATGAAACAGTACAAT 5563 Query 4288 ATTCCAATCTCTAAAGTTAAGACTCACCAAGAGCGTAATGGTAAATACTGTCCTCACCGT 4347 |||||||| ||||||| || || ||| | | ||| || || |||||||| ||| Sbjct 5564 ATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGGAAAGTATTGTCCTCATCGT 5623 Query 4348 ATGTTAGATGAAGGACGT 4365 ||||||| ||||||||| Sbjct 5624 ATGTTAGCAGAAGGACGT 5641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510251130346000