Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_023599.1 Length=38772 Score E Sequences producing significant alignments: (Bits) Value seq2 1887 0.0 seq1 351 2e-92 >seq2 Length=12201 Score = 1887 bits (2092), Expect = 0.0 Identities = 1258/1399 (90%), Gaps = 0/1399 (0%) Strand=Plus/Plus Query 17434 AAAGTGTGGATGGAATTAAAGAAACAATTACAAAAGTGGAAAATAATCAAAATGGTTTTG 17493 ||||||||||||| | ||| || | || || ||| | |||| ||| || |||| Sbjct 1835 AAAGTGTGGATGGTGTAAAATCTACTGTAACTAAGGTGCAGGATAACCAAGCCGGATTTG 1894 Query 17494 ATAAACGTGTTGCTACTGTAGAAAAAGATGCAACTACTATTAAACAAAATGTCTCTTCCA 17553 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1895 ATAAGCGTGTTGCTACTGTAGAAAAAGATGCAACTACCATTAAACAAAATGTCTCTTTCA 1954 Query 17554 TACAAAATACACAGACAGAACAAGGAAGACAATTACAAGAGGCGAAAGCTGGATGGGAAA 17613 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1955 TACAAAATACGCAGACAGAACAAGGAAGACAATTACAAGAGGCGAAAGCTGGATGGGAAA 2014 Query 17614 ATACTGCGAAAGCACTTCAAGGTAAAGTTGAGCTTAAACAAGTAGAGGATTATGTTGCGG 17673 |||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| | Sbjct 2015 ATACTGCGAAAGCACTGCAAGGTAAAGTTGAACTTAAGCAAGTAGAAGATTATGTTGCTG 2074 Query 17674 GGTTTAAGATTCCAGAGTTGAAGCAAACAGTTAATCAGAATAAACAAGATTTGTTAGATG 17733 |||||||||| || ||||||||||||| |||| || | ||||||||||||||||| | | Sbjct 2075 GGTTTAAGATACCTGAGTTGAAGCAAATAGTTGATAAAAATAAACAAGATTTGTTGGGAG 2134 Query 17734 AATTAGCTAATAAGCTTGCAACGGAACAATTTAATCAGAAAATGACTATGATCGACAACC 17793 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2135 AACTAGCTAATAAACTTGCAACGGAACAATTTAATCAGAAAATGACTATGATCGACAACC 2194 Query 17794 GTTTCACTATAAATGAAGAGGGTATCAATGCCGCAGCAAAAAAGAAAGAAGTATACACAA 17853 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2195 GTTTCACTATCAATGAAGAGGGTATCAATGCCGCAGCAAAAAAGAAAGAAGTATACACAA 2254 Query 17854 TAGAGCAAGCAAATGGACAATTTGCAAAAGATTCTTACGTAAAAGATATGGAAACCCGTC 17913 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 2255 TAGAGCAAGCAAATGGACAATTTGCAAAAGATTCTTATGTAAGAGATATGGAAACCCGTC 2314 Query 17914 TTCAGTTAACTGAAAAGGGTGTTAGTCTATCTGTAAAAGAAAATGATGTAATCGCAGCAT 17973 ||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||| Sbjct 2315 TTCAGTTAACTGAAAAGGGCGTTAGTCTATCTGTAAAAGAGAACGATGTAATTGCAGCAT 2374 Query 17974 TTAATATGAGTAAAGAAAACATTACTTTGAATGCGAACAGAATTAACTTAGTAGGTTTTA 18033 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 2375 TTAATATGAGCAAAGAAAACATTACGTTGAATGCGAACAGAATTAACTTAGTAGGTTTCA 2434 Query 18034 TTACAGCAAATCATATTAAAGGAAAAGTTCTAGAAGGAGTAACACTTAAAACAAGTGGAA 18093 ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| Sbjct 2435 TTACAGCAAATCATATTAAAGGAAAAGTTTTAGAAGGGGTAACGCTTAAAACAAGTGGAA 2494 Query 18094 ACAGATTTGTGGAAATAAATAAGCAAGACATGAAGATTTTCGATTTAGATAAACCACGTG 18153 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2495 ACAGATTTGTTGAAATAAATAAGCAAGACATGAAGATTTTCGATTTAGATAAGCCACGTG 2554 Query 18154 GTTATATAGGATTTATGGAAACAAATGATGGAAGTATTCAACCTTCGCTCGTCCTTGGTT 18213 | ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| Sbjct 2555 GCTATATAGGATTTATGGAAACAGATGATGGAAGTATTCAACCTTCATTAGTCCTTGGTT 2614 Query 18214 CTGATAATAGAAAATACGCTGGCACAGGATCATTTTATATTTATCAAGTCATGCCACGAA 18273 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 2615 CTGATAATAGAAAATACGCTGGTACAGGATCATTTTATATTTATCAAGTCATGCCGCGAA 2674 Query 18274 TTAATGGAGTCGATCAACCTTCTAAAGCGTATGCAAAATTTGGGGTTTCTAAAGGAGAAA 18333 |||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 2675 TTAATGGAGTTGATCAACCTTCTAAAGCATATGCGAAATTTGGGATTTCTAAAGGAGAAA 2734 Query 18334 ATGCAGAAGGAACTAATATTTGGTCAAATTATGTTCAAATGCAAAATGACGGTGGACATC 18393 |||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| Sbjct 2735 ATGCAGAAGGAACTAATATTTGGTCAAACTATATTCAAATGCATAATGACGGTGGACATC 2794 Query 18394 TGAGCGTTTATTCAGATGGACAATTTCGTTTTAAAAACTTGAATGATATTATTTTTGAAT 18453 ||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2795 TGAGCGTATATTCTGATGGACAATTTCGTTTTCAAAACTTGAATAATATTATTTTTGAAT 2854 Query 18454 CTGAAGGATGGGCTCCAGGATATGGTTACTTCTTTGTAACCACAACGGAACCTCATATTT 18513 ||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||| Sbjct 2855 CTGAAGGATGGGCTCCAGGATATGGTTACTTCTCTGTAACTACAACTGAACCACATATTT 2914 Query 18514 TTAACAATAACTGGGGACAGTTTACGTTTAAAAGGAAAGGCAGTGACTACAATATATCTT 18573 ||| |||||| ||| |||||||| || ||||| |||||||||||||| || ||| || Sbjct 2915 TTACAAATAACGCGGGGCAGTTTACTTTCAAAAGAAAAGGCAGTGACTATAAAATACATT 2974 Query 18574 TCATCAATGGTGCCTCTGATCATGATTTAATCATGGGTAATGCAATGATAAGATCAAGTT 18633 || | || || ||| | |||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2975 TCGTAAACGGCGCCACCGATCATGATTTAATTATGGGTAATGCAATGATAAGGTCAAGTT 3034 Query 18634 TTGTACAAGGTTATAACAACGGCTTACAGATTAAAGATATGATGGGCAAAGGATGGAAAG 18693 ||||||||||||||||||| ||| | |||||||||||||||||||| || |||||||||| Sbjct 3035 TTGTACAAGGTTATAACAATGGCCTGCAGATTAAAGATATGATGGGTAAGGGATGGAAAG 3094 Query 18694 ATATAGAGTTAAGAACCCTACGAGCACAAGAAAATATAAATGCCAATGGCCAAATGTGGG 18753 |||| || |||||||| ||||||| |||||||||||| ||| | || | ||||||| Sbjct 3095 ATATGGAATTAAGAACATTACGAGCGCAAGAAAATATATCTGCTACAGGACGTATGTGGG 3154 Query 18754 CAAAAGCATTTAATCCTACATCAGCTAGAAGTATGAAAGAAAATATAAAAGATATTCCTT 18813 | ||| ||||| |||| || || | | | ||| | ||| |||| |||| | Sbjct 3155 CGCAAGAATTTATCCCTAATTCTTCTCGTACGCTTAAAACGGACATAGAAGACCTTCCAT 3214 Query 18814 TCTCGGCTCTTGATAAAAT 18832 |||| ||| | |||||||| Sbjct 3215 TCTCTGCTTTAGATAAAAT 3233 Score = 475 bits (526), Expect = 9e-130 Identities = 414/512 (81%), Gaps = 2/512 (0%) Strand=Plus/Plus Query 20063 AAAAGGGGATGTTCAATAATGGAAATTAGAAAAAAGTTAGTTGACCCAAGTAAATATGGT 20122 |||||| |||||| |||||||||||| |||||||| |||||||| |||| ||||||||| Sbjct 5186 AAAAGGAGATGTTTAATAATGGAAATCAGAAAAAATTTAGTTGATGCAAGCAAATATGGT 5245 Query 20123 ACAAAGTGCCCTTATACAATGAATCCAGAATTTATCACAGTCCACAATACGTATAATGAT 20182 || ||||||||||||||||||||||||||||| || || ||||||||||| ||||| ||| Sbjct 5246 ACTAAGTGCCCTTATACAATGAATCCAGAATTCATTACTGTCCACAATACTTATAACGAT 5305 Query 20183 GCGCCAGCTGAGAATGAAATTGCTTATATGATACGAAATAATAATGAGGTGTCATTCCAC 20242 || |||| | || ||| | ||||||||||| || ||| |||| | || || || || Sbjct 5306 GCTACAGCAAATAACGAAGTGGCTTATATGATTCGTAATGATAACCAAGTATCGTTTCAT 5365 Query 20243 ATTGCAGTAGACGATAAAGAAGCTGTACAAGGCTTACCTTTAGAACGAAATGCATGGGCT 20302 ||||| |||||||||||||||||||||||||| | |||||||| || || || ||| | Sbjct 5366 ATTGCGGTAGACGATAAAGAAGCTGTACAAGGTATTCCTTTAGAGCGTAACGCTTGGCAT 5425 Query 20303 TGTGGAGATGGGAATGGTTCAGGCAACAAGAAAGTCGATTGGTGTGGAAATCTGTTATTC 20362 || || ||||| || | | | || | || || ||||| || ||||||||||| || Sbjct 5426 TGCGGTGATGGTGGCGG-TAACGGAAATCGTAAATCTATTGGAGTTGAAATCTGTTACTC 5484 Query 20363 TTTAAGCGGCGGGGAAAGATA-TATAAAGCAGAAAATAATGCAGCTATCGTTGTAGCCAA 20421 | |||| || || || |||| |||||||| || |||||||||||||||| ||||| Sbjct 5485 TCTAAGTGGTGGAGATCGATATTATAAAGCGGAGGATAATGCAGCTATCGTCGTAGCTGG 5544 Query 20422 ATTAATGAAACAATACAACATTCCAATAAGTAAAGTTCGCACACACCAATCGTGGAGTGG 20481 | |||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||| Sbjct 5545 GCTCATGAAACAGTACAATATTCCAATTAGTAAAGTTCGCACACATCAATCATGGAGTGG 5604 Query 20482 AAAATACTGCCCGCATCGTATGTTAGCGGAAGGGCGTTGGAATTCTTTTATAGAAAGGGT 20541 ||| || || || |||||||||||||| ||||| ||||||||| |||||| ||||| || Sbjct 5605 AAAGTATTGTCCTCATCGTATGTTAGCAGAAGGACGTTGGAATAGTTTTATTGAAAGAGT 5664 Query 20542 GCAAAACGCATATAACGGTGGTGGGAATGCAG 20573 ||||| |||||||||||||| || | | ||| Sbjct 5665 CCAAAATGCATATAACGGTGGAGGTAGTCCAG 5696 Score = 383 bits (424), Expect = 4e-102 Identities = 290/342 (85%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 16281 CGAATCCTTAGTAAATTCGGTGAAAAACAAGAAATGCTGGATCAGCTAGATAAATTGGTG 16340 ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||| Sbjct 1 CGAATCCTTAGTAAATTCGGTGAGAAACAAGAAATACTGGATCAGTTAGATAAATTAGTG 60 Query 16341 AAAGAAGCGAATGAAACAGCAAGTAGCGCTAAGAAAGAATCAGAAGCAGCGAAAACACTT 16400 ||||| || ||||||||||| ||| |||||||||||||| ||||||||||||||| | Sbjct 61 AAAGATGCAAATGAAACAGCTAGTGATGCTAAGAAAGAATCCGAAGCAGCGAAAACATTG 120 Query 16401 GCTGAAAAGGTACAAGAGAATATTAAAAACAATACTGTTGAAATTATAGAAGCTAAGAAT 16460 |||||||| |||||||||||| ||||||| || || || || || || ||||| |||||| Sbjct 121 GCTGAAAAAGTACAAGAGAATCTTAAAAATAACACGGTAGACATCATTGAAGCAAAGAAT 180 Query 16461 CCACCAACAACAGGGCTTAAACCTAATAAAACGCTTTGGCGTGATATGAGTAACGGAAAG 16520 ||||| ||||||||||||| |||| |||| || |||||||||||||| || || |||||| Sbjct 181 CCACCGACAACAGGGCTTAGACCTTATAAGACACTTTGGCGTGATATTAGCAATGGAAAG 240 Query 16521 CCCGGTATTTTAAAAATATGGACAGGTACAGCTTGGGAATCAGTTGTTCCTGATGTAGAA 16580 || |||||||| |||||||||||||| ||||||||||||| || || |||||||| || Sbjct 241 CCTGGTATTTTGAAAATATGGACAGGCGCAGCTTGGGAATCGGTCGTACCTGATGTTGAT 300 Query 16581 TCAATCAAAAAAGATACACTGATGCAGGTTAATAAAGATATT 16622 ||| | || ||||| || || ||||| | ||||||||| Sbjct 301 TCAGTTAAGAAAGAAACGTTGGAACAGGTGACAAAAGATATT 342 Score = 172 bits (190), Expect = 1e-38 Identities = 161/205 (79%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 20571 CAGGTTCTACCAAACCATCTAACAATGGTGTAGGTATTGTTACGATTACAGCGGATGTCT 20630 ||| | || | ||||| || || |||| | ||| | || || |||||||| ||||| | Sbjct 5928 CAGCTCCTTCTAAACCTTCAAATGATGGCATTGGTGTAGTAACTATTACAGCTGATGTAT 5987 Query 20631 TACGTGTTCGTACAGGACCAGGAACAAATTATGGCATTGTAAAGAATGTGTACCGAGGGG 20690 ||||||||||||| || |||||||| || ||||| | ||||| |||||||||| | | | Sbjct 5988 TACGTGTTCGTACTGGTCCAGGAACTAACTATGGTGTCGTAAAAAATGTGTACCAAAGTG 6047 Query 20691 AACGCTATCAATCTTGGGGCATTCAAAATGGTTGGTATAATGTTGGCGGAAATCAATGGG 20750 || | |||||||||||||| | | | |||||||||||||||||||| | ||||||| Sbjct 6048 AAAGATATCAATCTTGGGGATATAGAGACGGTTGGTATAATGTTGGCGGCGACCAATGGG 6107 Query 20751 TATCTGGGGAGTATGTGAGGTTTGA 20775 | ||||| || ||||||| |||||| Sbjct 6108 TTTCTGGTGAATATGTGAAGTTTGA 6132 Score = 87.8 bits (96), Expect = 4e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 19183 ATTAAAAGATTTAGTTCAAAATTTAATAAATGAGAAACTGAAACAGCCATAAGCTG-TTT 19241 |||||| | ||||| ||| | |||||||||||||||| | ||||||||||||| ||| Sbjct 3549 ATTAAAGGTATTAGTACAACAATTAATAAATGAGAAACCAGAGCAGCCATAAGCTGTTTT 3608 Query 19242 TTATTTTGCACAAAATAGGGCTTTTGTATAAA 19273 ||||||||| |||| || ||| |||| ||||| Sbjct 3609 TTATTTTGCGCAAAGTACGGC-TTTGAATAAA 3639 >seq1 Length=9149 Score = 351 bits (388), Expect = 2e-92 Identities = 263/309 (85%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 33954 GGAATGAACCATGAATACAGTAATTATTCAATTCGGTCAAGGTACAGAAGCATGGAAGGA 34013 ||||| || ||||||||| | |||||| |||| || |||||||||| ||| |||||||| Sbjct 8015 GGAATAAAAAATGAATACAATTATTATTAAATTTGGACAAGGTACAGCAGCTTGGAAGGA 8074 Query 34014 TATGCGAGAGATTACGAAATTTCTACAAGAGAAAGGCTATTTCGTTGAACCTTATGAAGA 34073 ||||| ||| ||| ||||| | ||||||||||||| |||| |||||||| |||||||| Sbjct 8075 TATGCAAGATATTGCGAAAGTGTTACAAGAGAAAGGGTATTCTGTTGAACCGTATGAAGA 8134 Query 34074 AATTGGATCTGTAAAACTAACTAAGAAAATCAGTGACGAATTAGTGGATAAGAAAAGAAA 34133 ||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| | Sbjct 8135 AATTGGAACTGTAAAACTAACTAAGAAAATCAATGACGAATTAGTAGATAAGAAAAAGCA 8194 Query 34134 ATTCAATTGTGATCTTTGCTTTCAAAATAAGGATATTGAAGAGAAATCAATTTATCAATT 34193 ||| ||||||||| |||||||| |||||||||||||||||| || || ||||||||||| Sbjct 8195 ATTTAATTGTGATATTTGCTTTTTAAATAAGGATATTGAAGAAAAGTCTATTTATCAATT 8254 Query 34194 TGATGAAGATGGCGACATTGTCGCATGCATGGATTGTGAGAAAAAAGCATTTGAACATTC 34253 ||| | ||| |||||||| || || || |||||||||||| ||||||||||||| || Sbjct 8255 CGATAAGTCTGGTGACATTGTAGCGTGTATAGATTGTGAGAAACAAGCATTTGAACAGTC 8314 Query 34254 AAAAAACTA 34262 |||||| || Sbjct 8315 AAAAAAATA 8323 Score = 288 bits (318), Expect = 2e-73 Identities = 185/202 (92%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 34393 TCAATAAAATATTTGTTTTGGAGGGAAATGAAAGTGGCGAAATGCAATTATGTTGGATGT 34452 |||| |||||| | |||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 8313 TCAAAAAAATAGCTATTTTGGAGGGGAATGAAAGTGGAGAAATGCAATTATGTTGGATGT 8372 Query 34453 GACAATGATGCAACAACCAAAGGTTTTATATTTGCTAGAGATCCACAAGGCAGGAAACAT 34512 | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 8373 AAAAATGATGCAACAACCAAGGGTTTTATATTCGCTAGAGATCCACAAGGCAGGAAGCAT 8432 Query 34513 CTTCCTACAGATGTATACGCTTGCGATAAACATAAAAAGTCTCTCAGtttttttGAATAT 34572 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 8433 CTTCCTACAGATGTATACGCTTGCGATAAACATAAAAAGTCTTCCAGTTTTTTTGAATAT 8492 Query 34573 AACACTGCTAAAACAAACTAAA 34594 || || || | ||||||||||| Sbjct 8493 AAAACAGCAAGAACAAACTAAA 8514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123877564842876