Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq26787 93.3 1e-13 >seq26787 Length=21907 Score = 93.3 bits (102), Expect = 1e-13 Identities = 270/413 (65%), Gaps = 2/413 (0%) Strand=Plus/Minus Query 131865 TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGC 131924 |||| || || || || ||||| || ||||| || || ||||| | || || |||| Sbjct 16442 TAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGC 16383 Query 131925 TTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATG 131984 | |||||||| || |||||||||||||| | || ||||| | | |||||| |||| | Sbjct 16382 TGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGAGACG 16323 Query 131985 AAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT- 132043 ||| |||| ||| || || || | || | | | | ||| || | Sbjct 16322 AAGGTCTGCACTGTGATTTCGCCTGTTTGCTGTACGGGATGAT-GAAGATGAAGCCCAGC 16264 Query 132044 GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACA 132103 || | | || || | |||| || || |||||||||| ||||||| | Sbjct 16263 GAGGAGCGCGTGAAGGGGATTGTCCGCGATGCGGTGGATATCGAGAGGGAGTTTGTCTGT 16204 Query 132104 GAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAA 132163 || ||| | |||||| ||| |||||||||||| | | |||| |||||||||| Sbjct 16203 GACGCTCTCCCTTGCGCGTTGGTTGGGATGAATGGGGTGTTGATGAGTCAGTACATTGAG 16144 Query 132164 TTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAAC 132223 || || || ||| | || | || |||||| || ||| || || ||| ||| Sbjct 16143 TTTGTAGCCGATAGGTTGCTGGACTCACTTGGCTACAGCAAAATCTACAACGTGATCAAC 16084 Query 132224 CCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 |||| | ||||||||| || ||||| |||| || || || |||||||| Sbjct 16083 CCCTTTGATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACCAATTTCTTCGA 16031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186076873330517