Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 93.3 1e-13
>seq26787
Length=21907
Score = 93.3 bits (102), Expect = 1e-13
Identities = 270/413 (65%), Gaps = 2/413 (0%)
Strand=Plus/Minus
Query 131865 TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGC 131924
|||| || || || || ||||| || ||||| || || ||||| | || || ||||
Sbjct 16442 TAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGC 16383
Query 131925 TTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATG 131984
| |||||||| || |||||||||||||| | || ||||| | | |||||| |||| |
Sbjct 16382 TGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGCTGATCTCGCGAGACG 16323
Query 131985 AAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGAT- 132043
||| |||| ||| || || || | || | | | | ||| || |
Sbjct 16322 AAGGTCTGCACTGTGATTTCGCCTGTTTGCTGTACGGGATGAT-GAAGATGAAGCCCAGC 16264
Query 132044 GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACA 132103
|| | | || || | |||| || || |||||||||| ||||||| |
Sbjct 16263 GAGGAGCGCGTGAAGGGGATTGTCCGCGATGCGGTGGATATCGAGAGGGAGTTTGTCTGT 16204
Query 132104 GAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAA 132163
|| ||| | |||||| ||| |||||||||||| | | |||| ||||||||||
Sbjct 16203 GACGCTCTCCCTTGCGCGTTGGTTGGGATGAATGGGGTGTTGATGAGTCAGTACATTGAG 16144
Query 132164 TTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAAC 132223
|| || || ||| | || | || |||||| || ||| || || ||| |||
Sbjct 16143 TTTGTAGCCGATAGGTTGCTGGACTCACTTGGCTACAGCAAAATCTACAACGTGATCAAC 16084
Query 132224 CCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276
|||| | ||||||||| || ||||| |||| || || || ||||||||
Sbjct 16083 CCCTTTGATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACCAATTTCTTCGA 16031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186076873330517
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |