Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq26443 91.5 1e-13
seq45547 87.8 1e-12
seq9418 86.0 4e-12
seq5564 86.0 4e-12
>seq26443
Length=10536
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| ||| || || |||||||| || | || || | | |||| |||| ||
Sbjct 8617 TGGAGGGTGGACTCATTCTGGATGTTGTAGTCCGCCAGAGTCCTTCCGTCCTCCAGCTGC 8676
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| |||||||| ||||| | |||||| || | || | ||||| ||||| |||||
Sbjct 8677 TTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTTG 8736
Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725
| || | ||| |||| ||||||||| ||||| || | ||||| || || || ||
Sbjct 8737 GGCTTGA-CATTGTCAATGGTGTCGCTGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGT 8795
Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749
| || || ||||||||||||||
Sbjct 8796 CAGGGTCTTGACAAAGATCTGCAT 8819
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| |||| | | |||| ||| || || ||| || || |||||||||||||
Sbjct 9276 ACCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 9335
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| |||| |||| || |||||||| || |||| | |||||| || | ||
Sbjct 9336 CAAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 9395
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || || ||||| || | ||||||||| |||||
Sbjct 9396 GATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGCTGCTCTCCAC 9455
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || ||||||||||||||
Sbjct 9456 CTCCAAAGTGATTGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 9503
>seq45547
Length=474
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | || ||| | |||||||| |||||| || || ||||||||||||||
Sbjct 211 ACCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAAC 270
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | || || | || || || ||||| |||| | ||||| || | ||
Sbjct 271 AAGAGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGAGG 330
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701
|| || || ||||| |||||| | |||| || | ||||||| ||||||
Sbjct 331 GACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCCAC 390
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || || || ||||||||||| |||||
Sbjct 391 TTCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCAT 438
>seq9418
Length=21897
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || ||||||||||| |||| | ||||| |||| |||| || |||||||| ||
Sbjct 11743 CTCCTTCTGTATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAA 11684
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|| | | ||||||||| | || | || |||||||| || || | | ||||
Sbjct 11683 GATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTGTCCTGGATCTT-AGCCTTGACAT 11625
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||||||| ||||| |||| ||||| || || || || | || || |
Sbjct 11624 TGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 11565
Query 33737 CAAAGATCTGCATA 33750
||||||| ||||||
Sbjct 11564 CAAAGATTTGCATA 11551
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || ||||||||||||| | || || |||| |||| || || ||||| ||
Sbjct 11286 TCCTTCTGAATGTTGTAATCGGCCAAAGTACGGCCGTCTTCCAGCTGCTTCCCGGCGAAG 11227
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
|||| | |||||| || | || | ||||| ||||| || || |||| || |
Sbjct 11226 ATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCTTTC-ACGTT 11168
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | ||||||||| ||||| || | ||||| || || || || || || || ||
Sbjct 11167 GTCGATGGTGTCGCTGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 11108
Query 33738 AAAGATCTGCATA 33750
|||||||||||||
Sbjct 11107 AAAGATCTGCATA 11095
>seq5564
Length=26244
Score = 86.0 bits (94), Expect = 4e-12
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| || | ||| | ||||| || || ||| ||| || || ||||| || || |
Sbjct 4659 CCACCCCTGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCC 4600
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || || | || ||||| ||||| ||||| | ||||||||| | ||
Sbjct 4599 AGGGTTCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 4540
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698
| ||| || ||||| ||| || ||||| ||| ||| | ||||| ||| ||
Sbjct 4539 ATACCCTCCTTGTCTTGAATCTTTGCTTTCA-CATTGTCGATCGTGTCAGAGCTC---TC 4484
Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || || || || || || || ||||||||||||||
Sbjct 4483 AACCTCAAGTGTGATTGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 4433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328510117746240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |