Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq26443 91.5 1e-13 seq45547 87.8 1e-12 seq9418 86.0 4e-12 seq5564 86.0 4e-12 >seq26443 Length=10536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | || || | | |||| |||| || Sbjct 8617 TGGAGGGTGGACTCATTCTGGATGTTGTAGTCCGCCAGAGTCCTTCCGTCCTCCAGCTGC 8676 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| ||||| | |||||| || | || | ||||| ||||| ||||| Sbjct 8677 TTACCGGCAAAGATCAACCTCTGCTGGTCCGGTGGTATCCCTTCCTTGTCTTGGATTTTG 8736 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | || | ||| |||| ||||||||| ||||| || | ||||| || || || || Sbjct 8737 GGCTTGA-CATTGTCAATGGTGTCGCTGCTCTCCACCTCCAAAGTGATTGTCTTTCCGGT 8795 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 8796 CAGGGTCTTGACAAAGATCTGCAT 8819 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||| | | |||| ||| || || ||| || || ||||||||||||| Sbjct 9276 ACCACCCCTCAGCCTGAGAACCAGATGGAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 9335 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| |||| || |||||||| || |||| | |||||| || | || Sbjct 9336 CAAGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGG 9395 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||||| || | ||||||||| ||||| Sbjct 9396 GATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGCTGCTCTCCAC 9455 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 9456 CTCCAAAGTGATTGTCTTTCCGGTCAGGGTCTTGACAAAGATCTGCAT 9503 >seq45547 Length=474 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||||| |||||| || || |||||||||||||| Sbjct 211 ACCACCACGCAGACGAAGGACCAAATGAAGAGTGGATTCCTTCTGTATGTTGTAATCAAC 270 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | || || || ||||| |||| | ||||| || | || Sbjct 271 AAGAGTCCTGCCATCTTCAAGCTGCTTCCCTGCAAATATCAGCCTTTGCTGGTCCGGAGG 330 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 || || || ||||| |||||| | |||| || | ||||||| |||||| Sbjct 331 GACCCCCTCCTTGTCCTGAATTTTTTCCTTCATATTATCAAGGGTGTCGGAGCTTTCCAC 390 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || ||||||||||| ||||| Sbjct 391 TTCCAGAGTGATAGTCTTTCCAGTGAAAGTCTTTACAAAGATTTGCAT 438 >seq9418 Length=21897 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || ||||||||||| |||| | ||||| |||| |||| || |||||||| || Sbjct 11743 CTCCTTCTGTATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAGCTGCTTTCCGGCGAA 11684 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | | ||||||||| | || | || |||||||| || || | | |||| Sbjct 11683 GATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTGTCCTGGATCTT-AGCCTTGACAT 11625 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||||| ||||| |||| ||||| || || || || | || || | Sbjct 11624 TGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGA 11565 Query 33737 CAAAGATCTGCATA 33750 ||||||| |||||| Sbjct 11564 CAAAGATTTGCATA 11551 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| | || || |||| |||| || || ||||| || Sbjct 11286 TCCTTCTGAATGTTGTAATCGGCCAAAGTACGGCCGTCTTCCAGCTGCTTCCCGGCGAAG 11227 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | |||||| || | || | ||||| ||||| || || |||| || | Sbjct 11226 ATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCTTTC-ACGTT 11168 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||||| ||||| || | ||||| || || || || || || || || Sbjct 11167 GTCGATGGTGTCGCTGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 11108 Query 33738 AAAGATCTGCATA 33750 ||||||||||||| Sbjct 11107 AAAGATCTGCATA 11095 >seq5564 Length=26244 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| || || ||| ||| || || ||||| || || | Sbjct 4659 CCACCCCTGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCC 4600 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || ||||| ||||| ||||| | ||||||||| | || Sbjct 4599 AGGGTTCGGCCATCCTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCCGGAGGA 4540 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| || ||||| ||| || ||||| ||| ||| | ||||| ||| || Sbjct 4539 ATACCCTCCTTGTCTTGAATCTTTGCTTTCA-CATTGTCGATCGTGTCAGAGCTC---TC 4484 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || || || || |||||||||||||| Sbjct 4483 AACCTCAAGTGTGATTGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 4433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328510117746240