Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq10156 318 2e-82 seq6213 251 2e-62 seq21559 196 1e-45 seq14731 187 7e-43 seq1192 167 7e-37 >seq10156 Length=9543 Score = 318 bits (352), Expect = 2e-82 Identities = 602/879 (68%), Gaps = 5/879 (1%) Strand=Plus/Plus Query 19602 TTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCG 19661 |||| || |||||||| | || |||| || ||| ||| || || |||| | | | Sbjct 538 TTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTG 597 Query 19662 GTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCA 19721 | || ||||| |||||||| || || | || ||| | ||| | || | Sbjct 598 GATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTA 657 Query 19722 TCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACG 19781 | || | ||||| |||||||| |||||||| | || ||||||||||| | || || | Sbjct 658 TAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATG 717 Query 19782 GGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGAC 19841 | || || | | || | || | ||||| | |||| | | ||||||||| | Sbjct 718 GCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTC 777 Query 19842 GAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTG 19901 | |||||||||||||| | | | || ||| ||||||||| | |||| || || | Sbjct 778 GTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAG 837 Query 19902 CTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCTTCT 19961 | || ||||||| || ||| | || | ||||||| ||||||| || ||||| | Sbjct 838 CACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTT 897 Query 19962 CCGATGCTATGCCTTTGGGTA-TCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCC 20020 | ||| ||||||||| || | |||| ||||| ||||||| ||| | ||||||| || Sbjct 898 CTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATGCT 956 Query 20021 GAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGG 20080 | || ||||| || |||||||| || |||||| | || || | | |||||| |||| Sbjct 957 TAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGC 1016 Query 20081 TCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTAC 20139 || |||| ||||| ||||| ||||| |||| || | | | ||| | | || || || Sbjct 1017 TCCTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTTTAGTTTGATAAGAGAAACCAC 1075 Query 20140 TGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACAT 20199 ||| | ||| | || | | |||| || || |||| ||||| || || || || Sbjct 1076 AGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATAT 1135 Query 20200 CGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAG 20259 |||| ||||||||||| ||||| | |||||||| | ||| ||| ||||||||| Sbjct 1136 TATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTC 1195 Query 20260 CCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTT 20319 |||||| |||| |||||| | || | ||||| || ||| |||||| || || || Sbjct 1196 TCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTT 1254 Query 20320 GGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGA 20379 | || |||||||| || || || ||||| |||||||| || || | | | || Sbjct 1255 AAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGA 1314 Query 20380 CAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTT 20439 | | ||||| | ||| | ||||||||||| ||| | ||||| | ||| | || | Sbjct 1315 TAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTAT 1374 Query 20440 TGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACT 20478 ||||| |||||||||| ||||||||||| ||||| || Sbjct 1375 GGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 251 bits (278), Expect = 2e-62 Identities = 396/562 (70%), Gaps = 4/562 (1%) Strand=Plus/Plus Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | ||||||| | || |||| | ||| | |||| ||||| ||| || || || Sbjct 582 TTTCTTGATCTACCCAATCGGGCAGGAAA-CTTTTTTGATGGTATGCTTTTAGGAATGTC 640 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||||| || || ||||| || |||||||| || Sbjct 641 TGGTACTTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATT 700 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | || || ||| | |||||||| || || |||||||||| ||||| |||| Sbjct 701 TCACATGTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTT 760 Query 20107 GCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 |||| || | | | ||| | | || || || ||| | ||| | || | |||| Sbjct 761 -CTTGGTAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 819 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 | || || |||| ||||| | ||||| || |||| ||||||||||| ||||| | Sbjct 820 AATGATTCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCC 879 Query 20226 GTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTG 20285 | |||||||| ||| | | ||||||||| |||| | |||| |||||| | | | Sbjct 880 GATTGATCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAG 939 Query 20286 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 20345 ||||| ||| || | ||||||||| | | || || || || ||||| | || | Sbjct 940 ATTGGCCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACC 999 Query 20346 TGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTT 20405 | ||| |||||||| || | | | | || | | ||| | || ||| | |||| Sbjct 1000 TAAACAAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTT 1059 Query 20406 GGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTC 20465 ||||||| ||| | || || ||||| || || | || || ||||||||||| ||||||| Sbjct 1060 GGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 1119 Query 20466 ATAACTTCCCACTTGACCTTGC 20487 |||||||||| || ||||| || Sbjct 1120 ATAACTTCCCTCTAGACCTAGC 1141 >seq21559 Length=2991 Score = 196 bits (216), Expect = 1e-45 Identities = 437/649 (67%), Gaps = 9/649 (1%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||| | || |||||||| || | ||||| || |||||||| || | ||||| | Sbjct 1980 TTTATTGTAGCTTTCATTGCAGCGTCTCCAGTAGATATTGATGGTATTCATGAACCTATT 2039 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 | || || ||||| |||||||| || || | ||| | ||| | | Sbjct 2040 TTTGGATCTCTACTTTACGGAAACAATATTATTTTTTATGCCATTATTCATATTTCTGAG 2099 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || | || | || || |||||||| |||||||| || ||||||| ||| | || Sbjct 2100 GCTACAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTATTGATGACTGGTTATAT 2159 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTT---AC 19834 || || || || | | || | || | |||| | |||| | || |||| | Sbjct 2160 AATGGCGGGCCTTATGAGCTAATTGTTCTATACTTTTTGCTTGG--TGTA-GCTTGATAG 2216 Query 19835 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCC 19894 ||||| | |||||||||||||| | | || || ||| | ||||||||| | |||| Sbjct 2217 ATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGTATGCGCCCTTGGATTACTATTGCA 2276 Query 19895 TACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGT 19954 || | ||||| |||||||| || || | | || | ||||||| ||||||| || Sbjct 2277 TATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTCTTAATCTACCCAATTGGTCAAGGA 2336 Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 ||||| | |||| ||||||||| | |||| |||| ||||||| ||| | ||||| Sbjct 2337 AGCTTTTATGATGGTATGCCTTTAGAAATCTTCTGTACTTTCAACTTTATGATTCTATTC 2396 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074 ||||| | | |||| || |||||||| || |||||| | | || ||||| |||||| Sbjct 2397 CAAGCTTAGGAAGACATCCTTATGCACCCATTTCACATGTTAGACGTAGCTGGAGTATTC 2456 Query 20075 GGTGGGT-CACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTG 20132 | | | | |||| |||| ||||| ||| |||| | | || | ||| | | | Sbjct 2457 AGCAGCTCCTTTATTTAGTGTTATGCATAATTC-CTTGGGAACTTCTAGTTTGATAAGGG 2515 Query 20133 AGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCT 20192 | || || ||| | ||| | || | | |||| || || ||||| ||||| || | Sbjct 2516 AAACCACAGAAAACGAATCTGTTAATGAAGATTACCGATTCGGTCAAGAGGAAGAAACTT 2575 Query 20193 ATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATA 20241 |||| || ||||| ||||||||||| ||||| || |||||||| ||||| Sbjct 2576 ATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATA 2624 Score = 84.2 bits (92), Expect = 7e-12 Identities = 171/254 (67%), Gaps = 9/254 (4%) Strand=Plus/Plus Query 20243 GCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 20302 ||| ||||||||| |||||| |||| |||||| | | | |||| || |||| Sbjct 2674 GCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCATAGAAACTTGGCTTGTAATAGGT 2733 Query 20303 ATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTT 20362 || |||||| | || || || || || || || || ||||| |||| | |||||| Sbjct 2734 ATCTGGTTCACGGCTTTAGGTATTAGCACTATAGCTTTCAATCTAAACGAGTGCAACTTC 2793 Query 20363 AACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 20422 || || | | | || | | ||| | | ||| | ||||||||||| ||| | || Sbjct 2794 AATCAATATGTAGTTGATAGTGAAGGTGGCATAATTAACACTTGGGCTGATATTATTAAC 2853 Query 20423 CGTGCTA--------ATCTCGGGT-TTGAGGTGATGCATGAACGGAATGCTCATAACTTC 20473 | | || | || ||| | ||||| ||||||||||| ||||||||||||||| Sbjct 2854 TGGGTTAACTGGGTTAACTTTGGTATGGAGGTTATGCATGAACGTAATGCTCATAACTTC 2913 Query 20474 CCACTTGACCTTGC 20487 || || | ||| || Sbjct 2914 CCTCTAGGCCTAGC 2927 >seq14731 Length=28268 Score = 187 bits (206), Expect = 7e-43 Identities = 235/323 (73%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||||| || ||||| || |||| ||||||||||| ||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || | |||||||| ||||| | | | ||||||| |||||| ||| |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 || || ||||| || || | ||||||||| | || || | || || ||||| || Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 || || ||| | |||||||| || || || | | || | ||||| || ||| | Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 ||||||||| | ||| | || || ||||| || || | || || ||||||||||| ||| Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 20462 GCTCATAACTTCCCACTTGACCT 20484 |||||||||||||| || ||||| Sbjct 20838 GCTCATAACTTCCCTCTAGACCT 20816 >seq1192 Length=17806 Score = 167 bits (184), Expect = 7e-37 Identities = 235/328 (72%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 20160 ATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACT 20219 ||||||||| || || ||||| ||||| || |||||||| ||||| ||||||||||| | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 20220 TTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCC 20279 ||| || ||||| |||| | | ||||||||| |||||| |||| |||||| Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 20280 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 20339 | || || | ||| | |||| ||||||||| | | || || || || ||||| | Sbjct 2448 TAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 20340 TTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTG 20399 | || || ||| | |||||||| || | || | | || || | ||| | | ||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566 Query 20400 ATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGA 20459 | | ||||||||| ||| | ||||| ||||| || || | | || | ||||||||| | Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626 Query 20460 ATGCTCATAACTTCCCACTTGACCTTGC 20487 |||||||||||||||| | ||||| || Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGC 2654 Score = 102 bits (112), Expect = 2e-17 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||||||||| || |||||||||||||| | || || || ||| | ||||||||| ||| Sbjct 2050 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 2109 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| |||||||| || |||| || ||||| | ||||||| | |||| Sbjct 2110 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATCGGTC 2168 Query 19950 AGGGTAGCTTCTC 19962 | || ||||| || Sbjct 2169 AAGGAAGCTTTTC 2181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148743265949226