Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq10156 306 1e-78 seq6213 251 2e-62 seq21559 196 1e-45 seq14731 190 6e-44 seq1192 174 5e-39 seq19766 86.0 2e-12 >seq10156 Length=9543 Score = 306 bits (338), Expect = 1e-78 Identities = 597/878 (68%), Gaps = 3/878 (0%) Strand=Plus/Plus Query 28730 TTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTG 28789 |||| || |||||||| | || |||| || ||| ||| || || |||| | | || Sbjct 538 TTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAACTTATTTTTG 597 Query 28790 GAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCA 28849 || ||| || || |||||||| || || | || ||| | | | | || | Sbjct 598 GATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGCTA 657 Query 28850 TCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACG 28909 | || | ||||| |||||||| |||||||| | || ||||||||||| | || || | Sbjct 658 TAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAATG 717 Query 28910 GGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGAC 28969 | || || | | || | || | ||||| | |||| || | ||||||||| | Sbjct 718 GCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTC 777 Query 28970 GCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAG 29029 | |||||||||||||| | | | || ||| || |||||| | | ||||| |||| Sbjct 778 GTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTCAG 837 Query 29030 CTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTA 29089 | || | ||||| || ||| | |||| | |||||||| | |||||||| ||| Sbjct 838 CACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTT 897 Query 29090 GCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCG 29149 | | |||||||| || ||| || || ||||||| ||| | | ||||| || Sbjct 898 CTAATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTATTCCATGCTT 957 Query 29150 AACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCT 29209 | || ||||| || |||||||| || |||||| | ||||| | | ||| ||| |||||| Sbjct 958 AGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTGGCT 1017 Query 29210 CGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACT 29268 | |||||||||| ||||| ||||| |||| | | | | ||| | | || || || Sbjct 1018 CCTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTTTAGTTTGATAAGAGAAACCACA 1076 Query 29269 GAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATC 29328 ||| | ||| || | | |||| || || |||| ||||| ||||| || || Sbjct 1077 GAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATATT 1136 Query 29329 GTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGC 29388 |||| ||||| ||||| ||||| | |||||||| | ||||||| |||||| || Sbjct 1137 ATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACTCT 1196 Query 29389 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 29448 |||||| |||| |||||| | || | ||||| || ||| |||||| || || || Sbjct 1197 CGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTTTA 1255 Query 29449 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGAC 29508 | || |||||||| || || || ||||| || ||||| || || | | | || Sbjct 1256 AGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTGAT 1315 Query 29509 AACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTT 29568 | | ||||| | ||||| |||||||||||| || | ||||| | |||| | || | Sbjct 1316 AGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTATG 1375 Query 29569 GAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACT 29606 || || |||||||| | |||||||||||| ||||| || Sbjct 1376 GAGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 251 bits (278), Expect = 2e-62 Identities = 531/797 (67%), Gaps = 39/797 (5%) Strand=Plus/Plus Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 ||||| ||||||| |||||||| | ||||||||||| | || || || || || Sbjct 347 CACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCT 406 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 28977 | | || | || | ||||| | |||| || | ||||||||| || |||||| Sbjct 407 TATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 466 Query 28978 GAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTC 29037 |||||||| | | | ||| ||| | || ||| || ||| ||||| ||||||||||| Sbjct 467 GAACTTAGTTTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTG 526 Query 29038 GCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA---AGGTTCTTTTA----- 29089 ||| | ||| |||||| | ||||||||| |||| | || || ||| | Sbjct 527 GCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCT 586 Query 29090 ----------------GC-------------GACGCGATGCCTTTGGGTATTTCAGGCAC 29120 || || | |||| ||| || || || || || Sbjct 587 TGATCTACCCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTAC 646 Query 29121 CTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACAT 29180 ||||||| ||| | || ||||||| || || ||||| || |||||||| || ||||| Sbjct 647 TTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACAT 706 Query 29181 GCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGT 29240 | | ||||| ||| |||| ||||| ||||| ||||| |||| ||||| |||| | || Sbjct 707 GTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGT 766 Query 29241 CACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGT 29299 || | | | ||| | | || || || ||| | ||| || | ||||| | Sbjct 767 AACTTT-TAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGAT 825 Query 29300 TTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGA 29359 | || |||| ||||| | |||||| || |||| ||||| ||||| ||||| || |||| Sbjct 826 TCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGA 885 Query 29360 TCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGC 29419 |||| ||||| | |||||| || |||| | |||| |||||| | | | |||| Sbjct 886 TCTTTTCATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGC 945 Query 29420 CGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACG 29479 | ||| || | ||||||||| | | || || || || ||||| | || || ||| Sbjct 946 CTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACA 1005 Query 29480 GTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTG 29539 || ||||| || | | | | || | | ||| | || ||||| |||||||||| Sbjct 1006 AGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCTG 1065 Query 29540 ATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACT 29599 || || | || || |||||||| || | ||||| |||||||| |||||||||||||||| Sbjct 1066 ATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACT 1125 Query 29600 TCCCACTTGATCTGGCT 29616 |||| || || || ||| Sbjct 1126 TCCCTCTAGACCTAGCT 1142 >seq21559 Length=2991 Score = 196 bits (216), Expect = 1e-45 Identities = 436/648 (67%), Gaps = 5/648 (1%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||| | || |||||||| || | ||||| || |||||||| || | |||||| | Sbjct 1980 TTTATTGTAGCTTTCATTGCAGCGTCTCCAGTAGATATTGATGGTATTCATGAACCTATT 2039 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 |||| ||| || || |||||||| || || | ||| | | | | | Sbjct 2040 TTTGGATCTCTACTTTACGGAAACAATATTATTTTTTATGCCATTATTCATATTTCTGAG 2099 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || | || | || || |||||||| |||||||| || ||||||| ||| | || Sbjct 2100 GCTACAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCTATTGATGACTGGTTATAT 2159 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | |||| | |||| || | || ||| Sbjct 2160 AATGGCGGGCCTTATGAGCTAATTGTTCTATACTTTTTGCTTGGTGTAGCTTGATAGATG 2219 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || | |||||||||||||| | | || || ||| | || |||||| | | ||||| Sbjct 2220 GGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGTATGCGCCCTTGGATTACTATTGCATAT 2279 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG-TTC 29084 ||||||| || ||||| || || | ||||| | |||||||| | |||||||| | Sbjct 2280 CCAGCTCCTGTTGCAGCTGCTACTACTATTTTCTTAATCTACCCAATTGGTCAAGGAAGC 2339 Query 29085 TTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCA 29144 ||||| || | |||||||| | || | | || ||||||| ||| | | ||||| Sbjct 2340 TTTTA-TGATGGTATGCCTTTAGAAATCTTCTGTACTTTCAACTTTATGATTCTATTCCA 2398 Query 29145 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGG 29204 ||| | | |||| || |||||||| || |||||| | | ||| |||||||| ||| | Sbjct 2399 AGCTTAGGAAGACATCCTTATGCACCCATTTCACATGTTAGACGTAGCTGGAGTATTCAG 2458 Query 29205 TGGCT-CGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAG 29262 ||| | ||||||||| ||||| ||| |||| | | || | ||| | | || Sbjct 2459 CAGCTCCTTTATTTAGTGTTATGCATAATTC-CTTGGGAACTTCTAGTTTGATAAGGGAA 2517 Query 29263 ACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTAT 29322 || || ||| || ||| || | | |||| || || ||||| ||||| |||||| Sbjct 2518 ACCACAGAAAACGAATCTGTTAATGAAGATTACCGATTCGGTCAAGAGGAAGAAACTTAT 2577 Query 29323 AACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 || || ||||| ||||| ||||| ||||| || |||||||| |||||| Sbjct 2578 AATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATAT 2625 >seq14731 Length=28268 Score = 190 bits (210), Expect = 6e-44 Identities = 236/323 (73%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| ||||| |||||||| || |||| ||||| ||||| ||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || | |||||||| ||||||| | | |||| || |||||| ||| |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 || || ||||| || || | ||||||||| | || || | || || ||||| || Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || ||| | || ||||| || || || | | || | ||||| || ||||| Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 ||||||||| || || | || || |||||||| || | ||||| |||||||| |||||| Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 29590 GCTCATAACTTCCCACTTGATCT 29612 |||||||||||||| || || || Sbjct 20838 GCTCATAACTTCCCTCTAGACCT 20816 >seq1192 Length=17806 Score = 174 bits (192), Expect = 5e-39 Identities = 237/329 (72%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 29288 ATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACT 29347 ||||||||| || || ||||| ||||| ||||||||||| ||||| ||||| ||||| | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 29348 TTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCC 29407 ||| || ||||| |||||| | |||||| || |||||| |||| |||||| Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 29408 TTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGT 29467 | || || | ||| | |||| ||||||||| | | || || || || ||||| | Sbjct 2448 TAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 29468 TTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTA 29527 | || || ||| | || ||||| || | || | | || || | ||| | | |||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566 Query 29528 ATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTA 29587 | | |||||||||| || | ||||| |||||||| || | |||| | |||||| |||| Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626 Query 29588 ATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||||||||||| | || || ||| Sbjct 2627 ATGCTCATAACTTCCCTCCAGACCTAGCT 2655 Score = 109 bits (120), Expect = 2e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||||||||| || |||||||||||||| | || || || ||| | || |||||| ||| Sbjct 2050 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 2109 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| |||||||| || ||||| || |||| |||||| | |||||||| ||||||| Sbjct 2110 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 2169 Query 29079 AGG 29081 ||| Sbjct 2170 AGG 2172 >seq19766 Length=60133 Score = 86.0 bits (94), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| ||||| ||||| |||||| | | || || ||||||| | | ||||| Sbjct 28533 GGTCGTGTAATTAACACTTGAGCTGATACTATTAA-CGGACTAACCTTGATATGGAAGTT 28591 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||||||||||||||||||| || || || ||| Sbjct 28592 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 28633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146581309171362