Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq10156 347 3e-91 seq6213 242 1e-59 seq21559 235 2e-57 seq14731 172 2e-38 seq1192 159 1e-34 >seq10156 Length=9543 Score = 347 bits (384), Expect = 3e-91 Identities = 614/889 (69%), Gaps = 6/889 (1%) Strand=Plus/Plus Query 18812 TTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAG 18870 ||||| || |||| || |||||||| | ||| | ||||| ||| ||| || || || Sbjct 528 TTTGTATTTGTTATAGCTTTCATTGCAACCCCTTCAGTAGATATTAATGATATTCGTGAA 587 Query 18871 CCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGC 18930 | | || || ||| ||||| |||||||| || || | || ||| | ||| | Sbjct 588 CTTATTTTTGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACT 647 Query 18931 AGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGG 18990 || || || | ||||| |||||||| |||||||| | || ||||||||||| Sbjct 648 TCTGGGGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGG 707 Query 18991 CTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCT 19050 | || || || || || | | || | || | ||||| | |||| || | | Sbjct 708 TTATATAATGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 767 Query 19051 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTT 19110 |||||||| || |||||||||||||| | | | || |||| |||||||||| | || Sbjct 768 TACATGGGTCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATT 827 Query 19111 GCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170 || || ||||| ||| |||| || || ||| | ||| | |||| ||| |||||||| Sbjct 828 GCATATTCAGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAA 887 Query 19171 GGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTA 19230 || |||| | | ||||||||| || ||| ||||| ||||||| ||| || || Sbjct 888 GGAAGCTTTTCTAATGGTATGCCTTTAGGAATTCTCGGTACTTTCAACTTTATGATTCTA 947 Query 19231 TTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTG 19290 ||||| ||| | || |||||||| |||||||| || |||||| |||| || | | || Sbjct 948 TTCCATGCTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTA 1007 Query 19291 TTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCG 19349 ||| | || || |||||||||| ||||| ||||| |||| || | | | ||| | | Sbjct 1008 TTCAGTGGCTCCTTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTTTAGTTTGATAAG 1066 Query 19350 TGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGAC 19409 ||||| || ||| | | |||| || | | ||| || || |||| ||||| || Sbjct 1067 AGAAACCACAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAAC 1126 Query 19410 TTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTT 19469 ||| || ||| | ||||||||||| |||||||| | | || || | || || || Sbjct 1127 TTAAAATATTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTT 1186 Query 19470 CAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGT- 19528 |||||| |||||| |||||||||| | || |||||||||| || ||||||| Sbjct 1187 CAACAACTCTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGGTC 1246 Query 19529 TTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGT 19588 || || | | | ||||| ||||| |||||| | || || || ||||| || || | Sbjct 1247 ATG--GCTTTAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAAT 1304 Query 19589 CCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTA 19648 | |||| | | ||||| | ||| | ||||||||||| ||| | ||||| | || Sbjct 1305 TTGTAGTTGATAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTA 1364 Query 19649 ACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACT 19697 || | || | ||||| ||||| |||| |||||||||||| ||||| || Sbjct 1365 ACTTTGGTATGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 242 bits (268), Expect = 1e-59 Identities = 527/791 (67%), Gaps = 41/791 (5%) Strand=Plus/Plus Query 18949 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 19008 ||||| ||||||| |||||||| | ||||||||||| | || || || || || Sbjct 347 CACTTTCACCCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCT 406 Query 19009 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 19068 | | || | || | ||||| | |||| || | ||||||||| || |||||| Sbjct 407 TATGAGCTCATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 466 Query 19069 GAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTT 19128 |||||||| | | | ||| ||||| |||||| || |||||| || |||||||| || Sbjct 467 GAACTTAGTTTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTG 526 Query 19129 GCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCA-----------------TTTGGT---- 19167 || | ||| || ||| | ||||| ||| |||| | Sbjct 527 GCATCTATTATTGCTGTTTTCTTGGTCTACCCAATCGGCTAGGAAGCTTTTTTGATTTCT 586 Query 19168 ---------CAA-------GGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTAC 19211 ||| || |||| || | ||||| ||| || || |||||| Sbjct 587 TGATCTACCCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTAC 646 Query 19212 GTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACAT 19271 ||||||| ||| | |||||||| | ||| || |||||||| |||||||| || ||||| Sbjct 647 TTTCAACTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACAT 706 Query 19272 GCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGT 19331 | | || || ||| | || |||||||| || ||||| |||| ||||| |||| |||| Sbjct 707 GTTAGGCGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTT-CTTGG 765 Query 19332 TACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGT 19390 || | | | ||| | | ||||| || ||| | | |||| || | || || | Sbjct 766 TAACTTTTAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGAT 825 Query 19391 TTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTA 19450 | || |||| ||||| | |||||| ||| | ||||||||||| |||||||| || | | Sbjct 826 TCGGTTAAGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGA 885 Query 19451 T-TTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGG 19509 | ||| || || | |||||||| |||| | |||||||||| || | | |||| Sbjct 886 TCTTTTCA-TATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGG 944 Query 19510 CCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAAT 19569 |||||| | | |||||||| | | | || | ||||| ||||| | |||| | || Sbjct 945 CCTGTGATATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAAC 1004 Query 19570 GGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCT 19629 || ||||| || | | | |||| | | ||| | || ||| | ||||||||| Sbjct 1005 AAGTTCAACTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCT 1064 Query 19630 GACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAAC 19689 || ||| | || || |||||||| || | || || ||||| |||||||||||||||||| Sbjct 1065 GATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 1124 Query 19690 TTCCCACTTGA 19700 ||||| || || Sbjct 1125 TTCCCTCTAGA 1135 >seq21559 Length=2991 Score = 235 bits (260), Expect = 2e-57 Identities = 491/725 (68%), Gaps = 5/725 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| | ||| ||||| | || || || || |||||||| || |||||||| || Sbjct 1887 TTTTGTTAGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTG 1946 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 || || || | | | | | | | ||||| || ||| | || |||||||| || | Sbjct 1947 ATAATCCCTACTTTATTGACCGTAAAT-TTTGTATTTATTGTAGCTTTCATTGCAGCGTC 2005 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || | || ||| || || ||| ||||| |||||||| Sbjct 2006 TCCAGTAGATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAA 2065 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAAT 18962 || || | ||| | ||| | | || | || | || || |||||||| Sbjct 2066 TATTATTTTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAAT 2125 Query 18963 TTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGT 19022 |||||||| || ||||||| ||| | || || || || || | | || | || Sbjct 2126 ATGGGAAGCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGT 2185 Query 19023 CTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCG 19082 | |||| | |||| || | || ||||| | |||||||||||||| | | Sbjct 2186 TCTATACTTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAG 2245 Query 19083 ACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGC 19142 || || ||||||||||||||| | |||| || ||||||||||||| || || || | Sbjct 2246 TCTGGGTATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTAC 2305 Query 19143 GGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTAT 19202 | ||| | |||| ||| |||||||||| |||| || | ||||||||| | || Sbjct 2306 TATTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAAT 2365 Query 19203 TAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCC 19262 |||| ||||||| ||| || ||||||| ||| | | ||||||| |||||||| Sbjct 2366 CTTCTGTACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCC 2425 Query 19263 GTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGT-CACTATTTAGTGCGATGCACG 19321 || |||||| | | || ||||| || ||| || | | | ||||||||| ||||| Sbjct 2426 ATTTCACATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATA 2485 Query 19322 GTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTAT 19380 ||| |||| | | || | ||| | | ||||| || ||| | | |||| || | Sbjct 2486 ATTC-CTTGGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAA 2544 Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 | ||| || || ||||| ||||| |||||||| ||||| ||||||||||| |||||| Sbjct 2545 GATTACCGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTT 2604 Query 19441 GGTCG 19445 || || Sbjct 2605 GGCCG 2609 >seq14731 Length=28268 Score = 172 bits (190), Expect = 2e-38 Identities = 230/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| || || ||||| ||||| |||||||| ||||| | ||||||||| |||||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 || | | || || || || | ||||||| |||||| ||| |||||| || Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 || ||||||||||| | | |||||||| | || | | | ||||| ||||| ||| Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||| | || | || ||||| || || || | |||| | ||||| || ||| | Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 ||||||||| | ||| | || || |||||||| || | || || ||||| ||||||||| Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 19681 GCTCATAACTTCCCACTTGA 19700 |||||||||||||| || || Sbjct 20838 GCTCATAACTTCCCTCTAGA 20819 >seq1192 Length=17806 Score = 159 bits (176), Expect = 1e-34 Identities = 226/316 (72%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 |||| |||| || || ||||| ||||| |||||||||||||| ||||||||||| |||| Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 ||| || | || | || | |||||||| |||||| |||||||||| | Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCAT 19558 | || |||| |||| | | || |||||||| | | | || | ||||| ||||| | Sbjct 2448 TAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 19559 TCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTG 19618 ||||| | || | || ||||| || | || | |||| || | ||| | | ||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAATTAATCTGTAGTTGATAATGAAGGTTGCATAATTA 2566 Query 19619 ATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTA 19678 | | ||||||||| ||| | ||||| |||||||| || | | || | ||| ||||||| Sbjct 2567 ACATTTGGGCTGATATTATTAATCGGGCTAACCTTGGTCTGAAAGTTAGGCATGAACGTA 2626 Query 19679 ATGCTCATAACTTCCC 19694 |||||||||||||||| Sbjct 2627 ATGCTCATAACTTCCC 2642 Score = 114 bits (126), Expect = 4e-21 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||||||||| || |||||||||||||| | || || || ||||||||||||||| ||| Sbjct 2050 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 2109 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || |||||||||||||| || || |||| || ||| | |||| ||| | ||||| Sbjct 2110 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 2169 Query 19170 AGG 19172 ||| Sbjct 2170 AGG 2172 Score = 80.6 bits (88), Expect = 8e-11 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||||||||||||| | |||| || ||||||| |||||| || || || Sbjct 2187 CGTCTGGGTATGCGCCCTTGGATTGCTATTGCATATTCAGCTCTTGTTGCAGCTGCAACT 2246 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 |||| ||| | | || ||| | |||||||| |||| | | ||||| || || Sbjct 2247 ACGGTTTTCTTGATTTACCCAATCGGTCAAGGAAGCTTTTCTAATGATATGCAGTTAGGA 2306 Query 19201 ATTAGTGGTACGTTCAACTACATG 19224 || |||||| |||||||| ||| Sbjct 2307 ATCTTTGGTACTTTCAACTATATG 2330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141067679755626