Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq36798 100 3e-16
seq247 100 3e-16
seq14506 84.2 2e-11
>seq36798
Length=236
Score = 100 bits (110), Expect = 3e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GT 131961
|||| || | ||||||||| | ||||||| ||||| || |||||||| | || | ||
Sbjct 233 CGCAGACGGAGAACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTC-CGCAAGAGT 175
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| ||||| || || | | |||| || | || ||||| || || || ||
Sbjct 174 CCGACCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCC 115
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || ||| ||| |||| | || | ||||| | ||||||||| |
Sbjct 114 TTCCTTGTCTTGAATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAA 55
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || ||||||||||| | ||||||||||||
Sbjct 54 AGTGATCGTCTTCCCTGTCAGAGTTTTCACGAAAATCTGCAT 13
>seq247
Length=47399
Score = 100 bits (110), Expect = 3e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GT 131961
|||| || | ||||||||| | ||||||| ||||| || |||||||| | || | ||
Sbjct 32978 CGCAGACGGAGAACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTC-CGCAAGAGT 33036
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||| ||||| || || | | |||| || | || ||||| || || || ||
Sbjct 33037 CCGACCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCC 33096
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || ||| ||| |||| | || | ||||| | ||||||||| |
Sbjct 33097 TTCCTTGTCTTGAATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAA 33156
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || ||||||||||| | ||||||||||||
Sbjct 33157 AGTGATCGTCTTCCCTGTCAGAGTTTTCACGAAAATCTGCAT 33198
>seq14506
Length=85774
Score = 84.2 bits (92), Expect = 2e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | | ||||| || || ||||| ||||| || |||
Sbjct 52408 ACGAAGGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGT 52467
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
| | ||| |||||||| || || | | |||| ||||| |||||||||||||| |||||
Sbjct 52468 CCTCCCATCCTCGAGCTGCTTCCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCC 52527
Query 132022 TTCTTTATC 132030
||||| ||
Sbjct 52528 CTCTTTGTC 52536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476322868096920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |