Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq36798 100 3e-16 seq247 100 3e-16 seq14506 84.2 2e-11 >seq36798 Length=236 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GT 131961 |||| || | ||||||||| | ||||||| ||||| || |||||||| | || | || Sbjct 233 CGCAGACGGAGAACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTC-CGCAAGAGT 175 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| || | || ||||| || || || || Sbjct 174 CCGACCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCC 115 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||| |||| | || | ||||| | ||||||||| | Sbjct 114 TTCCTTGTCTTGAATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAA 55 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || ||||||||||| | |||||||||||| Sbjct 54 AGTGATCGTCTTCCCTGTCAGAGTTTTCACGAAAATCTGCAT 13 >seq247 Length=47399 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATG-GT 131961 |||| || | ||||||||| | ||||||| ||||| || |||||||| | || | || Sbjct 32978 CGCAGACGGAGAACCAAATGGAGAGTTGACTCCTTTTGGATATTGTAGTC-CGCAAGAGT 33036 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| || | || ||||| || || || || Sbjct 33037 CCGACCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTTTGCTGATCAGGCGGAATCCC 33096 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||| |||| | || | ||||| | ||||||||| | Sbjct 33097 TTCCTTGTCTTGAATCTTTGTCTTCACATTATCAATCGTATCCGAGCTCTCCACTTCCAA 33156 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || ||||||||||| | |||||||||||| Sbjct 33157 AGTGATCGTCTTCCCTGTCAGAGTTTTCACGAAAATCTGCAT 33198 >seq14506 Length=85774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | ||||| || || ||||| ||||| || ||| Sbjct 52408 ACGAAGGCGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGT 52467 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | | ||| |||||||| || || | | |||| ||||| |||||||||||||| ||||| Sbjct 52468 CCTCCCATCCTCGAGCTGCTTCCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCC 52527 Query 132022 TTCTTTATC 132030 ||||| || Sbjct 52528 CTCTTTGTC 52536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476322868096920