Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq26787 297 3e-74 seq13309 295 1e-73 >seq26787 Length=21907 Score = 297 bits (328), Expect = 3e-74 Identities = 409/563 (73%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| || | |||||| |||| || | ||||||| || |||| | | Sbjct 16908 GAGCCGCTTCTCGCCTCAAACCCGGACCGATTCTGCATGTTCCCAATTGAATACCCTCAG 16849 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| | |||| | || |||||||| ||||| ||||||||||| || || Sbjct 16848 ATCTGGGAGATGTACAAGAAAG-CTGAAGCCTCCTTCTGGACAGCCGAGGAGGTAGATCT 16790 Query 1455836 CGGCGCCGACACGGTC--CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | | | | ||| || ||||||| | | | | |||||||||||| ||||||| | Sbjct 16789 CT-CTCAGG-ACGTTCGCCACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACG 16732 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 |||||||||||||| || ||||||| ||| |||||||| |||||| || |||||| | Sbjct 16731 CACGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCAG 16673 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||||||| |||||||| | | ||||| ||| || ||||| ||||||||||| || Sbjct 16672 GTTTATGAAGGAGGTCCAGGTAGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGAT 16613 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 || ||||| ||||| || | ||| |||||| |||| |||||| ||||||| || Sbjct 16612 TGAGAACATTCACTCCGAGATGTACAGCCTCCTGCTCGAGACCTACATCAAGGATTCGAA 16553 Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 || || || ||| || ||||| ||||| ||| | || | || ||| ||||| | Sbjct 16552 AGAAAAAAGCCGCCTTTTCCGCGCAATCGAGACGATTCCTTGCGTCGCGAAGAAGGCGCA 16493 Query 1456134 CTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGC 1456193 |||||| |||| |||||| || | ||| || |||||| |||||||| | | Sbjct 16492 GTGGGCGTTGAAATGGATCGAC-GGCGGGGAGTC----CTTTGCTGAGCGGCTGATAGCG 16438 Query 1456194 TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAG 1456252 || ||| ||||||| || ||||| ||||| || || |||||| | || || ||||| ||| Sbjct 16437 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCAATTTTCTGGCTGAAG 16378 Query 1456253 AAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| || | ||||| || || Sbjct 16377 AAGCGAGGGTTGATGCCTGGACT 16355 >seq13309 Length=30306 Score = 295 bits (326), Expect = 1e-73 Identities = 396/542 (73%), Gaps = 12/542 (2%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| ||| |||| | ||| ||||| |||||| | Sbjct 5778 AACCCAGACCGATTCTGCATGTTCCCAATCGAATACCCTCAGATCTGGGAGATGTACAAG 5837 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC-- 1455851 |||| ||||||||||||| ||||| ||||||||||| || ||| | | | ||| || Sbjct 5838 AAAG-CCGAGGCCTCCTTCTGGACAGCCGAGGAGGTAGATCTCT-CTCAGG-ACGTTCGC 5894 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 ||||||| | | | | |||||||||||| ||||||| ||||||||||||||| || Sbjct 5895 CACTGGGACGCCTTAACTGCCGACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTT- 5953 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 |||||| ||| |||||||| ||||| || |||||| | || ||||| |||||||| Sbjct 5954 CGCCGCATCCGACGGCATCGTCCTTGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCA 6013 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 || | ||||| ||| || ||||| ||||||||||| || || ||||| ||||| || Sbjct 6014 GGTGGCCGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTGAGAACATTCACTCCGA 6073 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 | ||| |||||| |||| |||||| ||||||| || || || || || || Sbjct 6074 GATGTACAGCCTCCTGCTCGAGACCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTT 6133 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 || || ||||||||| | || | ||| ||| ||||| | |||||| |||| ||||| Sbjct 6134 CCGTGCAATCGACACGATTCCTTGCGTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGAT 6193 Query 1456152 CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGC 1456210 | || || ||| | |||||||||| |||| | | || ||| |||| || || Sbjct 6194 CGAC--GGCGGGGAGTG---CTTTGCCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGG 6248 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 ||||| ||||| || || |||||| | || || ||||| ||||||||||| | ||||| Sbjct 6249 ATCTTCTTCTCCGGAAGCTTCTGCTCGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCT 6308 Query 1456271 GG 1456272 || Sbjct 6309 GG 6310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7173143220396314