Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq10156 269 3e-67 seq6213 232 8e-56 seq21559 188 9e-43 seq14731 168 8e-37 seq1192 122 1e-22 seq21920 114 2e-20 >seq10156 Length=9543 Score = 269 bits (298), Expect = 3e-67 Identities = 554/820 (68%), Gaps = 3/820 (0%) Strand=Plus/Plus Query 181136 TGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGC 181195 ||| || || | || || ||||| || || | |||||| || ||| |||| || Sbjct 596 TGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGC 655 Query 181196 AATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAA 181255 || ||| | ||||| || || || |||||||| |||| ||||||| ||| | ||||| Sbjct 656 TATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAA 715 Query 181256 CGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGG 181315 || ||||||| | || | || | ||||| | | || | | |||||||| Sbjct 716 TGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGG 775 Query 181316 ACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTC 181375 ||||| |||||||| || | | | ||||||| ||| ||||| | ||||||| || Sbjct 776 TCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTC 835 Query 181376 TGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTT 181435 || || | ||||| || ||||| ||| || |||| || | |||||||| || Sbjct 836 AGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 895 Query 181436 CTCTGACGCAATGCCACTTGGCATCTCT-GGTACATTCAACTACATGCTTGTTTTCCAAG 181494 ||| | | ||||| | || || ||| ||||| ||||||| ||| || | ||||| | Sbjct 896 TTCTAATGGTATGCCTTTAGGAAT-TCTCGGTACTTTCAACTTTATGATTCTATTCCATG 954 Query 181495 CAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTG 181554 | |||||||||| || ||||| || || |||||||| || || | ||||| ||| Sbjct 955 CTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTG 1014 Query 181555 GTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGA 181614 | || | || ||||| ||||| ||||| ||||| || | | | | | || || | Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074 Query 181615 CTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACA 181674 | |||| ||| || || | | |||| ||||| |||| ||||| || || || | Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134 Query 181675 TCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACT 181734 | | || || || ||||| ||||| | |||||||| | ||||||| |||||||||| Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194 Query 181735 CACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCAC 181794 | ||||| | || |||||| | ||| | ||||||||| || || ||| ||| || Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTT 1253 Query 181795 TGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCG 181854 | | | ||||| ||||| || ||||| || |||||||||||||| || | | | | | Sbjct 1254 TAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCAATTTGTAGTTG 1313 Query 181855 ACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCA 181914 | | |||| || | | ||||| ||||| || | | || || | | || | Sbjct 1314 ATAGTGAAGGTCGCATAATTAACACTTGGGCTGATATTATTAATCGGGTTAACTTTGGTA 1373 Query 181915 TGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCT 181954 |||| || ||||| || | || || || || ||||| || Sbjct 1374 TGGAGGTTATGCATGAACATAATGCTCATAATTTCCCTCT 1413 >seq6213 Length=1415 Score = 232 bits (256), Expect = 8e-56 Identities = 561/852 (66%), Gaps = 43/852 (5%) Strand=Plus/Plus Query 181155 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTAT 181214 || || || || |||||||| || |||| |||| | || || || | ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 181215 CCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTC 181274 || || |||||||| |||| ||||||| ||| | ||||| |||||||||| | ||| Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 181275 GTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCT 181334 | || | ||||| | | || | | |||||||| ||||| |||||||| | Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 181335 TACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGC-AGC 181393 | || ||||||||| || ||| | ||||||||| || ||||| || ||| | | Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 181394 ATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGG-------------TTCTTTCTCTG 181440 || |||||| ||| | ||||| || |||| | ||| ||||| ||| Sbjct 536 AT-TGCTGTTTTCTTGGTCTACCCAATCGG-CTAGGAAGCTTTTTTGATTTCTTGATCT- 592 Query 181441 ACGCAAT-------GCCACTT-------------------GGCATCTCTGGTACATTCAA 181474 || |||| | |||| || || |||||||| ||||| Sbjct 593 ACCCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAA 652 Query 181475 CTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGG 181534 || ||| | || ||||||| ||||||||||| || ||||| || || |||||||| || Sbjct 653 CTTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGG 712 Query 181535 TGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATC 181594 || || | ||||| || || || || ||||||| ||||| |||| ||||| || | Sbjct 713 CGTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTT 772 Query 181595 TTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACA 181654 | | | | || || || |||| ||| || || | ||||| ||||| | Sbjct 773 TAGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTA 832 Query 181655 AGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCA 181714 ||| ||||| | || || || | || || || ||||| ||||| || |||||||| Sbjct 833 AGAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTC 892 Query 181715 ATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGT 181774 ||||| | ||||||||| | |||| | || |||||| | ||| |||||||| | Sbjct 893 ATATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGAT 952 Query 181775 TGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAA 181834 | || |||||||| | | || | ||||| ||||| | ||||| || ||||| Sbjct 953 ATGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAA 1012 Query 181835 CTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCT 181894 |||||| | || | | || | ||||| | || | ||||| ||||| || | | Sbjct 1013 CTTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATATTAT 1072 Query 181895 CAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCT 181954 ||||| || || || |||||||| ||||| || || || || || |||||||| || Sbjct 1073 TAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCT 1132 Query 181955 TGATCTTGCAGC 181966 || || || || Sbjct 1133 AGACCTAGCTGC 1144 >seq21559 Length=2991 Score = 188 bits (208), Expect = 9e-43 Identities = 484/733 (66%), Gaps = 3/733 (0%) Strand=Plus/Plus Query 180988 AGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTC 181047 ||||| |||| | || | || ||||| ||| | || ||||| || || |||| || | Sbjct 1894 AGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCC 1953 Query 181048 CAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTG 181106 | ||| | ||| | | || | | ||| || || || || ||| | || || | || || Sbjct 1954 CTACTTTATTGACCGTAAATTT-TGTATTTATTGTAGCTTTCATTGCAGCGTCTCCAGTA 2012 Query 181107 GACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATC 181166 || || || || || | |||||| | ||| || || | || || ||||| || || Sbjct 2013 GATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATTATT 2072 Query 181167 TCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAA 181226 | | ||| || ||| ||| | || | ||| | || || || || || |||||| Sbjct 2073 TTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGGGAA 2132 Query 181227 GCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCAC 181286 || ||||| ||||||| ||| | ||||| || || |||| | || | || | || Sbjct 2133 GCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTATAC 2192 Query 181287 TTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGT 181346 || | | || | | ||| ||||| |||| |||||||| || | | | ||| Sbjct 2193 TTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGT 2252 Query 181347 ATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTC 181406 |||||||| ||||| | ||||||| | ||||| || ||||| || || || | ||| Sbjct 2253 ATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTC 2312 Query 181407 CTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGT 181466 || |||| || | |||||||| || | ||| | ||||| | | |||| || Sbjct 2313 TTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTCTGT 2372 Query 181467 ACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCAC 181526 || ||||||| ||| || | |||||||| || | |||| || ||||| || || ||| Sbjct 2373 ACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTTCAC 2432 Query 181527 ATGTTGGGTGTCGCAGGTGTATT-TGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTT 181585 ||||| | || || || ||||| | | | | | || |||| ||||| ||| || Sbjct 2433 ATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATAATTCCTT 2492 Query 181586 GGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAA 181645 || || ||| | | | || || || |||| || || || | | |||| Sbjct 2493 GGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTACCG 2552 Query 181646 GTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTT 181705 ||||| ||||| ||||| || || || || || || || || ||||| ||||| || || Sbjct 2553 ATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATT 2612 Query 181706 GATCTTCCAATAT 181718 |||||| |||||| Sbjct 2613 GATCTTTCAATAT 2625 >seq14731 Length=28268 Score = 168 bits (186), Expect = 8e-37 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 ||||||| ||||| ||||| ||||| || || || || || | || || ||||| ||| Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 || | |||||||| ||||||| | |||||||||| ||||| | | |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 181758 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 181817 ||||| ||||||||| | | || |||||||| || | | | ||||| ||||| || Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 181818 AACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAAC 181877 ||||| || | ||||||||||| || ||| | | || | ||||| || || | ||| Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 181878 ACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 181937 || ||||| | | | ||||| || || || |||||||| ||||| || || || Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 181938 GCGCACAACTTCCCGCTTGATCT 181960 || || |||||||| || || || Sbjct 20838 GCTCATAACTTCCCTCTAGACCT 20816 >seq1192 Length=17806 Score = 122 bits (134), Expect = 1e-22 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 181636 ATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACT 181695 ||||||||| ||||| ||||| ||||| || || ||||| || || || || ||||| | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 181696 TTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCC 181755 ||| || ||||| |||||| | ||||||||||| ||||| | || |||||| Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 181756 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 181815 | ||||| | |||| || | || || |||||||| | | || | ||||| ||||| | Sbjct 2448 TAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 181816 TTAACCTCAATGGATTCAACTTCAA 181840 | ||||| || | ||||||||||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAA 2531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 181308 TACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTT 181367 |||||||| ||||| |||||||| || ||| | ||||||||||| ||||| |||| Sbjct 2051 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTT 2110 Query 181368 GCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAA 181427 ||||| || ||||| || ||||| || ||||||| ||| | |||| || |||||||| Sbjct 2111 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 2170 Query 181428 GG 181429 || Sbjct 2171 GG 2172 >seq21920 Length=61477 Score = 114 bits (126), Expect = 2e-20 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 182595 TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAAT 182654 ||||||||||| | || ||| |||| || ||||| ||| | ||||| || | || | Sbjct 26200 TGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGGCCTGTAGACT 26141 Query 182655 TTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTT 182714 || || |||||||||||||| |||| | || ||||| ||| | | |||||||| ||| Sbjct 26140 TTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAATTTGAGCTT 26081 Query 182715 GCTCG-CCTGATTGGAATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTG 182772 || || ||| || ||| | ||||||| ||||| || || || || ||||| ||||||| Sbjct 26080 GCCCGATCTG--TGCAATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCTG 26023 Query 182773 TATTCGTCAGTGTGTTCCT 182791 | || || ||| ||||| Sbjct 26022 TTTTTGTTTCTGTATTCCT 26004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614245779400160