Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq10156 271 9e-68 seq6213 242 4e-59 seq21559 197 2e-45 seq14731 154 2e-32 seq1192 113 5e-20 seq21920 111 2e-19 seq6906 82.4 9e-11 >seq10156 Length=9543 Score = 271 bits (300), Expect = 9e-68 Identities = 488/709 (69%), Gaps = 3/709 (0%) Strand=Plus/Plus Query 178004 TGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGC 178063 ||| || || | || || ||||| || || | |||||| || ||| |||| || Sbjct 596 TGGATCTCTACTTTACGGAAACAATATTATTTTTGGTGCCATTATTCTTACTTCTGGGGC 655 Query 178064 AATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAA 178123 || ||| | ||||| || || || |||||||| |||| ||||||| ||| | ||||| Sbjct 656 TATAGGTTTGCACTTTTACCCAATATGGGAAGCAACATCTATTGATGAATGGTTATATAA 715 Query 178124 CGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGG 178183 || ||||||| | || | || | ||||| | ||||| | | |||||||| Sbjct 716 TGGCGGTCCTTCTGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGG 775 Query 178184 ACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTC 178243 ||||||||||||||| | | || | ||||||| ||| ||||| | | ||||| || Sbjct 776 TCGTGAGTGGGAACTTAGTTTCAGTGTGGGTATGCACCCTTGGATTATTATTGCATATTC 835 Query 178244 TGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATT 178303 || || | ||||| || || | ||| | |||| || | |||||||| || Sbjct 836 AGCACCTATTGCAGCTGCTATTGCTGGTTTCTTAATCTACCCAATTGGTCAAGGAAGCTT 895 Query 178304 TTCTGACGCAATGCCACTTGGCA-TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAG 178362 |||| | | ||||| | || | |||| ||||| ||||||| ||| || | ||||| | Sbjct 896 TTCTAATGGTATGCCTTTAGGAATTCTC-GGTACTTTCAACTTTATGATTCTATTCCATG 954 Query 178363 CAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTG 178422 | | |||||||| || |||||||| || |||||||| || || | |||||| ||| Sbjct 955 CTTAGCACAACATCCTTATGCACCCATTTCACATGTTCGGCGTAGATTAAGTATTCAGTG 1014 Query 178423 GTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGA 178482 | || | || ||||| ||||| ||||| ||||| || | | | | | ||||| | Sbjct 1015 GCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTTTAGTTTGATAAGAGAAACCA 1074 Query 178483 CTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACA 178542 | |||| ||||| || | | ||| ||||| |||| ||||| || || || | Sbjct 1075 CAGAAAATGAATCTGCTAATGAAGATTACCGATTCGGTTAAGAGGAAGAAACTTAAAATA 1134 Query 178543 TCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACT 178602 | | || || ||||| || || || | |||||||| | ||||||| |||||||||| Sbjct 1135 TTATAGCTGCTCATGGTTATTTTGGCCCATTGATCTTTCGATATGCTAGTTTCAACAACT 1194 Query 178603 CACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCAC 178662 | ||||| | || |||||| | ||| | ||||||||| || || ||| ||| || Sbjct 1195 CTCGTTCTTTACATTTCTTCATAGCAACTTGGCCTGTAAGAGGTATTTGG-TCATGGCTT 1253 Query 178663 TGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCA 178711 | | | ||||| ||||| || ||||| || |||||||||||||| || Sbjct 1254 TAAGTATTAGCACAATGGCTTTCAACCTAAACGGATTCAACTTCAATCA 1302 >seq6213 Length=1415 Score = 242 bits (268), Expect = 4e-59 Identities = 563/851 (66%), Gaps = 41/851 (5%) Strand=Plus/Plus Query 178023 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTAT 178082 || || || || |||||||| || |||| |||| | || || || | ||||| | Sbjct 296 AATAATATTATTTCTGGTGCCATTATTCCTACTTCTACGGCTATATGTTTGCACTTTCAC 355 Query 178083 CCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTC 178142 || || |||||||| |||| ||||||| ||| | ||||| |||||||||| | ||| Sbjct 356 CCAATATGGGAAGCAGCATATGTTGATGAATGGTTATATAATGGTGGTCCTTATGAGCTC 415 Query 178143 GTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCA 178202 | || | ||||| | ||||| | | |||||||| ||||||||||||||| Sbjct 416 ATTGTTGTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 475 Query 178203 TACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGC-AGC 178261 | || | ||||||||| || ||| | ||| ||||| || ||||| || ||| | | Sbjct 476 TTCCATCGAGGTATGCGTCCTTGGGTTGCTGTTGCATATTCAGCTCCCGTGGCATCTATT 535 Query 178262 ATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGG--------TTCATTTTCTGA---- 178309 || | | || ||| ||||||| || |||| | ||| || |||| ||| Sbjct 536 ATTG-CTGTTTTCTTGGTCTACCCAATCGG-CTAGGAAGCTTTTTTGATTTCTTGATCTA 593 Query 178310 CGCAAT-------GCCACTT-------------------GGCATCTCTGGTACATTCAAC 178343 | |||| | |||| || || |||||||| |||||| Sbjct 594 CCCAATCGGGCAGGAAACTTTTTTGATGGTATGCTTTTAGGAATGTCTGGTACTTTCAAC 653 Query 178344 TACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGT 178403 | ||| | || ||||||| || |||||||| || |||||||| || |||||||| || Sbjct 654 TTTATGATCGTATTCCAAGATGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 713 Query 178404 GTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 178463 || || | |||||||| || || || ||||||| ||||| |||| ||||| || | | Sbjct 714 GTAGCTAGAGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTTCTTGGTAACTTTT 773 Query 178464 TCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAA 178523 | | | ||||| || |||| ||||| || | ||||| ||||| || Sbjct 774 AGTTTGATAAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAATGATTCGGTTAA 833 Query 178524 GAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAA 178583 || ||||| | || || || | || || ||||| || || || || |||||||| | Sbjct 834 GAGGAAGAAAATTATAATATTCTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTTCA 893 Query 178584 TATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTT 178643 |||| | ||||||||| | |||| | || |||||| | ||| |||||||| | Sbjct 894 TATGATAGTTTCAACAACCCTCGTTGTTTACATTTCTTCTTAACAGATTGGCCTGTGATA 953 Query 178644 GGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAAC 178703 | || |||||||| | | || | ||||| ||||| | ||||| || |||||| Sbjct 954 TGTATTTGGTTCACGTCTTTAGGTATTAGCACTATGGCTTCCAACCTAAACAAGTTCAAC 1013 Query 178704 TTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTC 178763 ||||| | | | | || | ||||| | || | ||||| ||||| || | | Sbjct 1014 TTCAATAAAACTGTAGTTGATAGGCAAGGTTGCGTAATTAACACTTGGGCTGATATTATT 1073 Query 178764 AACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTT 178823 ||||| || || || |||||||| ||||| || || || || || |||||||| || Sbjct 1074 AACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTA 1133 Query 178824 GATCTTGCAGC 178834 || || || || Sbjct 1134 GACCTAGCTGC 1144 >seq21559 Length=2991 Score = 197 bits (218), Expect = 2e-45 Identities = 486/733 (66%), Gaps = 3/733 (0%) Strand=Plus/Plus Query 177856 AGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTC 177915 ||||| |||| | || | || ||||| ||| | || ||||| || || |||| || | Sbjct 1894 AGTGGATAACCTGCACTGACAATCGCCTTTATATTGGATGGTTTGGTGTTTTGATAATCC 1953 Query 177916 CAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTG 177974 | ||| | ||| | | || | | ||| || || || || ||| | || || | || || Sbjct 1954 CTACTTTATTGACCGTAAATTT-TGTATTTATTGTAGCTTTCATTGCAGCGTCTCCAGTA 2012 Query 177975 GACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATC 178034 || || || || || | |||||| | ||| || || | || || ||||| || || Sbjct 2013 GATATTGATGGTATTCATGAACCTATTTTTGGATCTCTACTTTACGGAAACAATATTATT 2072 Query 178035 TCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAA 178094 | | ||| || ||| ||| | || | ||| | || || || || || |||||| Sbjct 2073 TTTTATGCCATTATTCATATTTCTGAGGCTACAGGTTTGCATTTTTACCCAATATGGGAA 2132 Query 178095 GCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCAC 178154 || ||||| ||||||| ||| | ||||| || || |||| | || | || | || Sbjct 2133 GCAGCATCTATTGATGACTGGTTATATAATGGCGGGCCTTATGAGCTAATTGTTCTATAC 2192 Query 178155 TTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGT 178214 || | ||||| | | ||| ||||| |||||||||||||| | | || | ||| Sbjct 2193 TTTTTGCTTGGTGTAGCTTGATAGATGGGTTGTGAGTGGGAACTTAGTTTCAGTCTGGGT 2252 Query 178215 ATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTC 178274 |||||||| ||||| | | ||||| | ||||| || ||||| || | | | ||| Sbjct 2253 ATGCGCCCTTGGATTACTATTGCATATCCAGCTCCTGTTGCAGCTGCTACTACTATTTTC 2312 Query 178275 CTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGT 178334 | |||| || | |||||||| |||| ||| | ||||| | | |||| || Sbjct 2313 TTAATCTACCCAATTGGTCAAGGAAGCTTTTATGATGGTATGCCTTTAGAAATCTTCTGT 2372 Query 178335 ACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCAC 178394 || ||||||| ||| || | |||||||| | | |||| || |||||||| || ||| Sbjct 2373 ACTTTCAACTTTATGATTCTATTCCAAGCTTAGGAAGACATCCTTATGCACCCATTTCAC 2432 Query 178395 ATGTTGGGTGTCGCAGGTGTATTC-GGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTT 178453 ||||| | || || || |||||| | | | | | || |||| ||||| ||| || Sbjct 2433 ATGTTAGACGTAGCTGGAGTATTCAGCAGCTCCTTTATTTAGTGTTATGCATAATTCCTT 2492 Query 178454 GGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAA 178513 || || ||| | | | ||||| || |||| ||||| || | | ||| Sbjct 2493 GGGAACTTCTAGTTTGATAAGGGAAACCACAGAAAACGAATCTGTTAATGAAGATTACCG 2552 Query 178514 GTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTT 178573 ||||| ||||| ||||| || || || || || || || ||||| || || || || || Sbjct 2553 ATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATT 2612 Query 178574 GATCTTCCAATAT 178586 |||||| |||||| Sbjct 2613 GATCTTTCAATAT 2625 >seq14731 Length=28268 Score = 154 bits (170), Expect = 2e-32 Identities = 228/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565 ||||| | ||||| ||||| ||||| || || || || || | || ||||| || || Sbjct 21138 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGTTGCTCATGGTTATTTT 21079 Query 178566 GGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 178625 || | |||||||| ||||||| | |||||||||| ||||| | | |||||| | Sbjct 21078 GGCCAATTGATCTTTCAATATGTTAGTCTCAACAACTCTCGTTCTTTACGTTTCTTCTTA 21019 Query 178626 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 178685 ||||| ||||||||| | | || |||||||| || | | | ||||| ||||| || Sbjct 21018 GCAGCTTGGCCTGTAATAAGTATTTGGTTCACGGCTTTAGATATTAGCACTATGGCTTTC 20959 Query 178686 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178745 ||||| || | ||||||||||| || || | | || | ||||| || || | ||| Sbjct 20958 AACCTAAACAGGTTCAACTTCAATCAATCTGTAGTTGATTGTCAAGGTCGCGTAATTAAC 20899 Query 178746 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 178805 || ||||| | | | ||||| || || || |||||||| ||||| || || || Sbjct 20898 ACTTGGGCTTATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 20839 Query 178806 GCGCACAACTTCCCGCTTGATCT 178828 || || |||||||| || || || Sbjct 20838 GCTCATAACTTCCCTCTAGACCT 20816 >seq1192 Length=17806 Score = 113 bits (124), Expect = 5e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 178504 ATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACT 178563 ||||||| | ||||| ||||| ||||| || || ||||| || || || ||||| || | Sbjct 2331 ATGGTTACATATTCGGTCAAGAGGAAGAAACTTATAACATTGTAGCTGCTCATGGTTATT 2390 Query 178564 TCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCC 178623 || || ||||| |||||| | ||||||||||| ||||| | || |||||| Sbjct 2391 CTGGCCGATTGATAA---AATATGTTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCT 2447 Query 178624 TCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCAT 178683 | ||||| | |||| || | || || |||||||| | | || | ||||| ||||| | Sbjct 2448 TAGCAGCTTTGCCTATA-TAGGTATTTGGTTCACGACTTTAGGTATTAGCACTATGGCTT 2506 Query 178684 TTAACCTCAATGGATTCAACTTCAA 178708 | ||||| || | ||||||||||| Sbjct 2507 TCAACCTAAACAGGTTCAACTTCAA 2531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 |||||||| ||||||||||||||| | |||| | ||||||||||| ||||| ||| Sbjct 2051 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTT 2110 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | || || ||| || |||| || |||||||| Sbjct 2111 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAA 2170 Query 178296 GG 178297 || Sbjct 2171 GG 2172 >seq21920 Length=61477 Score = 111 bits (122), Expect = 2e-19 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 179457 TGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAAT 179516 ||||||||||| | || ||| |||| || ||||| ||| | ||||| || | || | Sbjct 26200 TGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGGCCTGTAGACT 26141 Query 179517 TTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTT 179576 || || |||||||||||||| |||| | || ||||| ||| | | |||||||| ||| Sbjct 26140 TTTGTTGCTCTCCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAATTTGAGCTT 26081 Query 179577 GCTCG-CCTGATTGGTATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTG 179634 || || ||| || || | ||||||| ||||| || || || || ||||| ||||||| Sbjct 26080 GCCCGATCTG--TGCAATTACGACCTTATAATGCAATCGCATTCTCCGGTCCAATTGCTG 26023 Query 179635 TATTCGTCAGTGTTTTCCT 179653 | || || ||| ||||| Sbjct 26022 TTTTTGTTTCTGTATTCCT 26004 >seq6906 Length=33569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 178314 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAAC 178373 ||||| | || ||||||||||| || | | || |||| |||||||| | |||||| Sbjct 25517 ATGCCTTTAGGAATCTCTGGTACTTTTATCCTTATCATTGTATTCCAAGCTTAGCACAAC 25458 Query 178374 ATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTC 178433 || | ||| |||| || |||||| || | | | |||||||| | | || ||| Sbjct 25457 ATCATTATGTACCCATTTTGCATGTTAGGCATAGTTAGAGTATTCGGGGACTTCCTATTC 25398 Query 178434 AGTGCAATGCACGGTTCTTTGGTTACATCT 178463 ||||| ||||| ||||||||||| || ||| Sbjct 25397 AGTGCTATGCATGGTTCTTTGGTAACTTCT 25368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605642986917360