Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19144 111 2e-19 seq2295 107 3e-18 seq36786 91.5 2e-13 >seq19144 Length=21831 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | |||| ||||| | |||| | || || | ||| |||| ||| ||| Sbjct 18283 CCTCCTTGATCAACATATCGAGCAGTATCATTAAACACCCTTAACATGGGAACAATGCCA 18224 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| ||||| |||||| ||||||||||| | || || |||||| || ||| Sbjct 18223 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 18164 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| || | || |||||||| Sbjct 18163 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 18104 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || ||||||||||| ||||| Sbjct 18103 CCTTCAATGCTATCATCCTTCATG 18080 >seq2295 Length=9791 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | |||| ||||| | ||| | || || | ||| |||| ||| ||| Sbjct 7462 CCTCCTTGATCAACATATCGAGCAGTATCATTGAACACCCTTAACATGGGAACAATGCCA 7521 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| ||||| |||||| ||||||||||| | || || |||||| || ||| Sbjct 7522 TTAGATGCCCCATTAGTTCCACGGATATAACTTCCAGTGGCACGGATATTATGAACAGAC 7581 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || ||||| || ||| ||| | |||||| || | || |||||||| Sbjct 7582 ACACCAATCCCTCCAGCAGATTTGCTGATAACAGCACACTCCTTTAGCGTCTCATATATT 7641 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || ||||||||||| ||||| Sbjct 7642 CCTTCGATGCTATCATCCTTCATG 7665 >seq36786 Length=236 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || | ||| |||| ||| ||||||||| ||||| |||||| ||||||||||| Sbjct 4 ACCCTTAACATGGGAACAATGCCATTAGATGCCCCATTAGTTCCACGGATATAACTTCCA 63 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || |||||| || ||| | ||| || ||||| || ||| ||| | |||| Sbjct 64 GTGGCACGGATATTATGAACAGACACACCAATCCCTCCAGCAGATTTGCTGATAACAGCA 123 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 || || | || |||||||| || || ||||||||||| ||||| Sbjct 124 CACTCCTTTAGCGTCTCATATATTCCTTCAATGCTATCATCCTTCATG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686493245935080