Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9952 102 7e-17 seq9418 96.9 3e-15 seq14506 95.1 1e-14 seq25669 93.3 4e-14 seq26443 91.5 1e-13 seq756 91.5 1e-13 >seq9952 Length=36685 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | || | || | ||| || || |||||||| ||||| || | | Sbjct 3231 CCTCCGCGGAGACGGAGCACAAGGTGGAGCGTCGACTCCTTTTGAATGTTGTAATC-CGC 3289 Query 27081 ATGTTGCGCTC-GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || |||||| ||||| || |||||| | || || | ||| || ||||| || Sbjct 3290 AAGCGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 3349 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| ||||||| || | | | || | || || | || || Sbjct 3350 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGAACTCTCGAC 3409 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||||||| | || ||||||||||| ||||||||||| ||||| Sbjct 3410 TTCCAGAGTTATCGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 3457 >seq9418 Length=21897 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| ||||||| ||||| || ||| Sbjct 11748 GTCGACTCCTTCTGTATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAGCTGCTTTCCG 11689 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| |||||||| || | |||||||| || |||||| || Sbjct 11688 GCGAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTGTCCTGGATCTTAGCCTTG 11629 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| || || || || || || || | ||||| ||||| || Sbjct 11628 ACATTGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 11569 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || ||||||||||||||| || Sbjct 11568 TTGACAAAGATTTGCATACCT 11548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||||| | || | ||| | ||||| || || ||||||||||| ||| | Sbjct 11550 CCTCCCCTCAACCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 11491 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| |||||||| || |||||| | || || | ||| || ||||| || Sbjct 11490 AATGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGG 11431 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | | || | ||||| || || || Sbjct 11430 ATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCACTGCTCTCCACC 11371 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | || |||||||| || ||||| ||||| |||||| Sbjct 11370 TCCAAAGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATA 11323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||||||||| ||| || | | || |||| |||||||| || ||| Sbjct 11064 GTAGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTTCCG 11005 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||| |||||||| || | || || || || |||||| || Sbjct 11004 GCGAAGATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTG 10945 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || ||||| | ||| || | ||||| |||| ||| Sbjct 10944 ACGTTGTCGATGGTGTCGCTGCTCTCGACTTCCAAAGTAATCGTCTTGCCAGTCAAAGTC 10885 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 10884 TTGACGAAGATCTGCATACCT 10864 >seq14506 Length=85774 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||||| || | || || ||||| || || |||||||| || Sbjct 52175 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGTCTGCC 52234 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| | | | ||||| |||||||| ||||| |||| | | || || ||||| || Sbjct 52235 AATGTC-CTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTGG 52293 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||| |||| | | || | || |||| ||||| Sbjct 52294 GATCCCCTCCTTGTCTTGTATCTTTGCCTTCACGTTATCGATGGTATCTGAACTCTCAAC 52353 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | |||||| | ||| || |||||||| |||||||||||||||||| Sbjct 52354 CTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTGCATA 52402 >seq25669 Length=30460 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| |||| || | || || || |||||||||||||| || | | Sbjct 9001 CCTCCTCGGAGCCGCAGGACCAGGTGGAGTGTCGACTCCTTTTGAATATTGTAATC-CGC 8943 Query 27081 ATG-TTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | ||||| ||||| || |||||| | || || | ||| || ||||| || Sbjct 8942 AAGCGTCCTTCCATCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 8883 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| ||||||| || | | | || | || || | || || Sbjct 8882 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCGATCGTATCAGAACTCTCGAC 8823 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||||||| | ||| || || || || || |||||||| ||||| Sbjct 8822 TTCCAGAGTTATCGTTTTTCCGGTGAGCGTCTTGACAAAGATCTGCAT 8775 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| || | ||| || || || ||||||||||| || | | Sbjct 1037 CCTCCTCGGAGACGCAGGACCAGGTGGAGCGTCGACTCCTTCTGAATATTGTAATC-CGC 1095 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || | ||||| ||||| || |||||| | || || | ||| || ||||| || Sbjct 1096 AAGCGTACGTCCATCTTCTAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGAGG 1155 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| ||||||| || | | | || | || || | || || Sbjct 1156 AATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGAACTCTCGAC 1215 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| |||||||| | || || || || || ||||||||||| ||||| Sbjct 1216 TTCCAGAGTTATCGTCTTCCCGGTTAGCGTCTTCACAAAGATCTGCAT 1263 >seq26443 Length=10536 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||| ||||| ||| || | | || ||||||| ||||| ||||| Sbjct 9079 GTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCTTCCAGCTGCTTACCA 9138 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||| || ||||| || | ||||| || || |||||| || Sbjct 9139 GCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTG 9198 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || || | || || | ||||| |||||||| Sbjct 9199 ACGTTGTCGATGGTGTCACTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTC 9258 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 9259 TTCACAAAGATTTGCATA 9276 >seq756 Length=57245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||||| || | || || ||||| || || |||||||| || Sbjct 50694 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGTCTGCC 50753 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| | | | ||||| |||||||| ||||| |||| | | || || ||||| || Sbjct 50754 AATGTC-CTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTGG 50812 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||| |||| | | || | || |||| ||||| Sbjct 50813 GATCCCCTCCTTGTCTTGTATCTTTGCCTTCACGTTATCGATGGTATCTGAACTCTCAAC 50872 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | |||||| | ||| || |||||||| ||||||||||||| |||| Sbjct 50873 CTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTACATA 50921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424683757357464