Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq9952 102 7e-17
seq9418 96.9 3e-15
seq14506 95.1 1e-14
seq25669 93.3 4e-14
seq26443 91.5 1e-13
seq756 91.5 1e-13
>seq9952
Length=36685
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || | || | || | ||| || || |||||||| ||||| || | |
Sbjct 3231 CCTCCGCGGAGACGGAGCACAAGGTGGAGCGTCGACTCCTTTTGAATGTTGTAATC-CGC 3289
Query 27081 ATGTTGCGCTC-GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | | || |||||| ||||| || |||||| | || || | ||| || ||||| ||
Sbjct 3290 AAGCGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 3349
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||| ||||| ||||||| || | | | || | || || | || ||
Sbjct 3350 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGAACTCTCGAC 3409
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| |||||||| | || ||||||||||| ||||||||||| |||||
Sbjct 3410 TTCCAGAGTTATCGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 3457
>seq9418
Length=21897
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || | |||| ||||||| ||||| || |||
Sbjct 11748 GTCGACTCCTTCTGTATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAGCTGCTTTCCG 11689
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || || | ||| |||||||| || | |||||||| || |||||| ||
Sbjct 11688 GCGAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTGTCCTGGATCTTAGCCTTG 11629
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| || || || || || || || | ||||| ||||| ||
Sbjct 11628 ACATTGTCAATGGTGTCGCTGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 11569
Query 27231 TTCACAAAGATTTGCATAGCT 27251
|| ||||||||||||||| ||
Sbjct 11568 TTGACAAAGATTTGCATACCT 11548
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| | ||||| | || | ||| | ||||| || || ||||||||||| ||| |
Sbjct 11550 CCTCCCCTCAACCTTAGGACGAGATGGAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 11491
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || |||| |||||||| || |||||| | || || | ||| || ||||| ||
Sbjct 11490 AATGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGG 11431
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || |||||| || | | | || | ||||| || || ||
Sbjct 11430 ATTCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATTGTGTCACTGCTCTCCACC 11371
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | ||| || | || |||||||| || ||||| ||||| ||||||
Sbjct 11370 TCCAAAGTGATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATA 11323
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || ||||||||||| ||| || | | || |||| |||||||| || |||
Sbjct 11064 GTAGACTCCTTCTGAATATTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTTCCG 11005
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | | ||| |||||||| || | || || || || |||||| ||
Sbjct 11004 GCGAAGATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGGATCTTAGCCTTG 10945
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| || || ||||| | ||| || | ||||| |||| |||
Sbjct 10944 ACGTTGTCGATGGTGTCGCTGCTCTCGACTTCCAAAGTAATCGTCTTGCCAGTCAAAGTC 10885
Query 27231 TTCACAAAGATTTGCATAGCT 27251
|| || ||||| |||||| ||
Sbjct 10884 TTGACGAAGATCTGCATACCT 10864
>seq14506
Length=85774
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
||||| || | || | ||||| || | || || ||||| || || |||||||| ||
Sbjct 52175 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGTCTGCC 52234
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|||| | | | ||||| |||||||| ||||| |||| | | || || ||||| ||
Sbjct 52235 AATGTC-CTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTGG 52293
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||| |||| | | || | || |||| |||||
Sbjct 52294 GATCCCCTCCTTGTCTTGTATCTTTGCCTTCACGTTATCGATGGTATCTGAACTCTCAAC 52353
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | |||||| | ||| || |||||||| ||||||||||||||||||
Sbjct 52354 CTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTGCATA 52402
>seq25669
Length=30460
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | ||||| |||| || | || || || |||||||||||||| || | |
Sbjct 9001 CCTCCTCGGAGCCGCAGGACCAGGTGGAGTGTCGACTCCTTTTGAATATTGTAATC-CGC 8943
Query 27081 ATG-TTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | | | | ||||| ||||| || |||||| | || || | ||| || ||||| ||
Sbjct 8942 AAGCGTCCTTCCATCTTCCAGCTGCTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGG 8883
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||| ||||| ||||||| || | | | || | || || | || ||
Sbjct 8882 AATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCGATCGTATCAGAACTCTCGAC 8823
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| |||||||| | ||| || || || || || |||||||| |||||
Sbjct 8822 TTCCAGAGTTATCGTTTTTCCGGTGAGCGTCTTGACAAAGATCTGCAT 8775
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | |||| |||| || | ||| || || || ||||||||||| || | |
Sbjct 1037 CCTCCTCGGAGACGCAGGACCAGGTGGAGCGTCGACTCCTTCTGAATATTGTAATC-CGC 1095
Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | | || | ||||| ||||| || |||||| | || || | ||| || ||||| ||
Sbjct 1096 AAGCGTACGTCCATCTTCTAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGAGG 1155
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||| || ||||| ||||||| || | | | || | || || | || ||
Sbjct 1156 AATACCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTATCAGAACTCTCGAC 1215
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| |||||||| | || || || || || ||||||||||| |||||
Sbjct 1216 TTCCAGAGTTATCGTCTTCCCGGTTAGCGTCTTCACAAAGATCTGCAT 1263
>seq26443
Length=10536
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || || ||||| ||||| ||| || | | || ||||||| ||||| |||||
Sbjct 9079 GTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGGCCGTCTTCCAGCTGCTTACCA 9138
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | | ||| || ||||| || | ||||| || || |||||| ||
Sbjct 9139 GCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTG 9198
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| || || || || | || || | ||||| ||||||||
Sbjct 9199 ACGTTGTCGATGGTGTCACTGCTCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTC 9258
Query 27231 TTCACAAAGATTTGCATA 27248
||||||||||||||||||
Sbjct 9259 TTCACAAAGATTTGCATA 9276
>seq756
Length=57245
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079
||||| || | || | ||||| || | || || ||||| || || |||||||| ||
Sbjct 50694 CCTCCTCGAAGACGTAGCACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAGTCTGCC 50753
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
|||| | | | ||||| |||||||| ||||| |||| | | || || ||||| ||
Sbjct 50754 AATGTC-CTCCCATCTTCAAGCTGTTTCCCGGCAAAAATCAACCTATGCTGGTCCGGTGG 50812
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||| |||| | | || | || |||| |||||
Sbjct 50813 GATCCCCTCCTTGTCTTGTATCTTTGCCTTCACGTTATCGATGGTATCTGAACTCTCAAC 50872
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| | |||||| | ||| || |||||||| ||||||||||||| ||||
Sbjct 50873 CTCCAAAGTTATGGTTTTCCCTGTCAGAGTCTTCACAAAGATTTACATA 50921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424683757357464
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