Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11108 104 3e-17 seq25823 102 1e-16 seq26787 95.1 2e-14 seq2295 91.5 2e-13 seq23783 89.7 6e-13 seq19144 89.7 6e-13 seq13309 86.0 8e-12 >seq11108 Length=39206 Score = 104 bits (114), Expect = 3e-17 Identities = 227/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539 |||||||| || | | ||||| || |||| |||||||| ||||| | | || Sbjct 4667 TCAAGGATGTCTGCTCTGTTAGTTGCTGCAA---CCACAATGACGCCAGTGTTACCCTCG 4723 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| || | | || || | || || |||||||| |||||| || Sbjct 4724 AAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCCG 4783 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||||| | | |||| | || ||||||||||| ||||||| || || || || Sbjct 4784 CCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATGCAC 4843 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || || || || ||| ||||| ||||| || | ||||| ||||||||| Sbjct 4844 GGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCAACA 4903 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | | |||| | || | ||||||||| | ||||| || Sbjct 4904 AACATCTCGACAAATTCGGAGCCAGA-TATTGAAAAGAATGGGACGCCAGCCTCACCAGC 4962 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 |||||| || || |||||||| || || || || Sbjct 4963 AATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGG 4998 >seq25823 Length=50596 Score = 102 bits (112), Expect = 1e-16 Identities = 229/339 (68%), Gaps = 14/339 (4%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539 |||||||| || | | ||||| || |||| |||||||| ||||| | | || Sbjct 44493 TCAAGGATGTCTGCTCTGTTAGTTGCTGCAA---CCACAATGACGCCAGTGTTACCCTCG 44437 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| || | | || || | || || |||||||| |||||| || Sbjct 44436 AAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC- 44378 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| ||||| | | |||| | || ||||||||||| ||||||| || || || Sbjct 44377 --ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 44320 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || || || ||| ||||| ||||| || | ||||| |||||| Sbjct 44319 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 44260 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACC 11775 ||||||||||| ||||| | | | |||| | || | |||||| || | ||||| Sbjct 44259 ACAAACATCTCGACAAATTCGGAGCCAGA-TATTGAAAAGAATGGAACGCCAGCCTCACC 44201 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || |||||| || || |||||||| || || || || Sbjct 44200 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGG 44162 >seq26787 Length=21907 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| ||||| || ||||| || || || || || |||||| || || ||||| | || Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| |||| | |||||| |||||||||||||| || || || || Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || ||||| | || || || || ||||| | | || | |||||||| || Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGA---CTCCCCGCCGTCGATCCATTTCAACGC 16488 Query 122850 CCATTTCGCCTTCTTC 122865 ||| | |||||||||| Sbjct 16489 CCACTGCGCCTTCTTC 16504 >seq2295 Length=9791 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| ||||||||||| ||||||||||| ||||| || | || ||| | ||| | ||| Sbjct 7812 CTGTGGTCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTG 7871 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| || |||||| | | | ||||||||||| ||| |||||| || | | Sbjct 7872 AGACATGAAGTGGTATGTTTTAATAGCCGAATCAATGTCATCCTTGTGGATTCCAACAGA 7931 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118 |||| ||| | ||||| || || |||| | | | || | || || || | || | Sbjct 7932 AACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGA-CCTTTAATAGGT 7990 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | |||| ||||| |||| ||||| ||| || ||||| |||| || Sbjct 7991 ATGACCTCTCCAGGGTCTTGAATCCAAAATAATCATAATCAAAGTCACG 8039 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || ||||||||||||||||| ||||| || || | ||| ||||| | Sbjct 6587 GGTAGTGCAATTGATGCCAAATTGCACACAGCAGTTTCCGTGGGACTTGTATACTCAATG 6646 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||| || || ||| ||||| || |||| ||||| ||||| || ||| || Sbjct 6647 ATCTCAGTACACAAATTTGAAGATTTAATTGTTCCCAGATTCTGCTGGTTGCTTTTCCTG 6706 Query 111350 TTGCACGCATCCTTGTAGAG 111369 ||||| | |||| |||||| Sbjct 6707 TTGCAGGTGTCCTGGTAGAG 6726 >seq23783 Length=11624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 246/374 (66%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | |||||||| || ||||| || ||||||||| | Sbjct 5366 AAATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACC 5425 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | ||| | || || |||||||||||||||||||| ||||| || Sbjct 5426 ACCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCA 5485 Query 11659 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||| ||| || | ||||| | ||| || ||||| || || || | Sbjct 5486 AGGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTC 5541 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACAT-TTGATTCA 11773 | ||||||| ||||||||| | | || | ||| || ||| |||| | | || Sbjct 5542 CCACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAA-GGGAGTTCCCGCCTCT 5600 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || |||| |||| || || || ||||| ||||| || || || | || || Sbjct 5601 CCGGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGGAGGCCCGACCAGCAGACAT 5660 Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 ||| || |||||||| || | ||| | || || | |||||| ||||| ||| Sbjct 5661 CCTTTCGGAATCTTGGCTCCCAGAGCCGTATACTTATCCGGATTCTTGAGGAAATCAACA 5720 Query 11894 ATCTCTTCAAGTTC 11907 | ||| | ||| || Sbjct 5721 ACCTCCTGAAGCTC 5734 >seq19144 Length=21831 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 |||||||||||||| |||||||| || ||||| || | || ||| | ||| | ||| Sbjct 17933 TGCGGTCTTGGTGTTCCAGCATTAAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGT 17874 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| || |||||| | | | ||||||||||| ||| |||||| |||| | Sbjct 17873 GACATGAAGTGGTATGTTTTAATAGCTGAATCAATGTCATCCTTGTGGATCCCGACAGAA 17814 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| | ||||| || || |||| | | | || | || || | | || || Sbjct 17813 ACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCCTGGA-CCTTCAACAGGTA 17755 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | |||| ||||| || | ||||| ||| || ||||| ||||||| Sbjct 17754 TGACCTCTCTAGGGTCTTAAATCCAAAATAATCATAATCAAAGTCCCG 17707 >seq13309 Length=30306 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || || ||||| || || || || || |||||| | || ||||| | || Sbjct 6356 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCC 6297 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| |||| | |||||| |||||||||||||| || || || || Sbjct 6296 GCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCA 6237 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || ||||||| || | ||||| | ||| | | || | |||||||| || Sbjct 6236 GGCGAACGCAATCAGCCTCTCGGCAA---AGCACTCCCCGCCGTCGATCCATTTCAACGC 6180 Query 122850 CCATTTCGCCTTCTTC 122865 ||| | |||||||||| Sbjct 6179 CCACTGCGCCTTCTTC 6164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627652064191200