Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq11108 104 3e-17
seq25823 102 1e-16
seq26787 95.1 2e-14
seq2295 91.5 2e-13
seq23783 89.7 6e-13
seq19144 89.7 6e-13
seq13309 86.0 8e-12
>seq11108
Length=39206
Score = 104 bits (114), Expect = 3e-17
Identities = 227/336 (68%), Gaps = 8/336 (2%)
Strand=Plus/Plus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539
|||||||| || | | ||||| || |||| |||||||| ||||| | | ||
Sbjct 4667 TCAAGGATGTCTGCTCTGTTAGTTGCTGCAA---CCACAATGACGCCAGTGTTACCCTCG 4723
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| || |||||||| || | | || || | || || |||||||| |||||| ||
Sbjct 4724 AAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCCG 4783
Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659
| ||||| | | |||| | || ||||||||||| ||||||| || || || ||
Sbjct 4784 CCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATGCAC 4843
Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719
|| || || || ||| ||||| ||||| || | ||||| |||||||||
Sbjct 4844 GGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCAACA 4903
Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778
|||||||| ||||| | | | |||| | || | ||||||||| | ||||| ||
Sbjct 4904 AACATCTCGACAAATTCGGAGCCAGA-TATTGAAAAGAATGGGACGCCAGCCTCACCAGC 4962
Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|||||| || || |||||||| || || || ||
Sbjct 4963 AATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGG 4998
>seq25823
Length=50596
Score = 102 bits (112), Expect = 1e-16
Identities = 229/339 (68%), Gaps = 14/339 (4%)
Strand=Plus/Minus
Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539
|||||||| || | | ||||| || |||| |||||||| ||||| | | ||
Sbjct 44493 TCAAGGATGTCTGCTCTGTTAGTTGCTGCAA---CCACAATGACGCCAGTGTTACCCTCG 44437
Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599
|| || |||||||| || | | || || | || || |||||||| |||||| ||
Sbjct 44436 AAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC- 44378
Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656
|||| ||||| | | |||| | || ||||||||||| ||||||| || || ||
Sbjct 44377 --ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 44320
Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716
|| || || || || ||| ||||| ||||| || | ||||| ||||||
Sbjct 44319 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 44260
Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACC 11775
||||||||||| ||||| | | | |||| | || | |||||| || | |||||
Sbjct 44259 ACAAACATCTCGACAAATTCGGAGCCAGA-TATTGAAAAGAATGGAACGCCAGCCTCACC 44201
Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814
|| |||||| || || |||||||| || || || ||
Sbjct 44200 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGG 44162
>seq26787
Length=21907
Score = 95.1 bits (104), Expect = 2e-14
Identities = 139/196 (71%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| ||||| || ||||| || || || || || |||||| || || ||||| | ||
Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||| ||| |||| | |||||| |||||||||||||| || || || ||
Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
|| ||||| | || || || || ||||| | | || | |||||||| ||
Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGA---CTCCCCGCCGTCGATCCATTTCAACGC 16488
Query 122850 CCATTTCGCCTTCTTC 122865
||| | ||||||||||
Sbjct 16489 CCACTGCGCCTTCTTC 16504
>seq2295
Length=9791
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999
||| ||||||||||| ||||||||||| ||||| || | || ||| | ||| | |||
Sbjct 7812 CTGTGGTCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTG 7871
Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059
||||| || |||||| | | | ||||||||||| ||| |||||| || | |
Sbjct 7872 AGACATGAAGTGGTATGTTTTAATAGCCGAATCAATGTCATCCTTGTGGATTCCAACAGA 7931
Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT 112118
|||| ||| | ||||| || || |||| | | | || | || || || | || |
Sbjct 7932 AACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGA-CCTTTAATAGGT 7990
Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| | |||| ||||| |||| ||||| ||| || ||||| |||| ||
Sbjct 7991 ATGACCTCTCCAGGGTCTTGAATCCAAAATAATCATAATCAAAGTCACG 8039
Score = 82.4 bits (90), Expect = 1e-10
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| || || ||||||||||||||||| ||||| || || | ||| ||||| |
Sbjct 6587 GGTAGTGCAATTGATGCCAAATTGCACACAGCAGTTTCCGTGGGACTTGTATACTCAATG 6646
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| || ||||| || || ||| ||||| || |||| ||||| ||||| || ||| ||
Sbjct 6647 ATCTCAGTACACAAATTTGAAGATTTAATTGTTCCCAGATTCTGCTGGTTGCTTTTCCTG 6706
Query 111350 TTGCACGCATCCTTGTAGAG 111369
||||| | |||| ||||||
Sbjct 6707 TTGCAGGTGTCCTGGTAGAG 6726
>seq23783
Length=11624
Score = 89.7 bits (98), Expect = 6e-13
Identities = 246/374 (66%), Gaps = 10/374 (3%)
Strand=Plus/Plus
Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598
||| |||||||| || || | | |||||||| || ||||| || ||||||||| |
Sbjct 5366 AAATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACC 5425
Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658
| |||||| | | ||| | || || |||||||||||||||||||| ||||| ||
Sbjct 5426 ACCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCA 5485
Query 11659 TGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714
|| ||| ||| || | ||||| | ||| || ||||| || || || |
Sbjct 5486 AGGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTC 5541
Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACAT-TTGATTCA 11773
| ||||||| ||||||||| | | || | ||| || ||| |||| | | ||
Sbjct 5542 CCACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAA-GGGAGTTCCCGCCTCT 5600
Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833
|| |||| |||| || || || ||||| ||||| || || || | || ||
Sbjct 5601 CCGGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGGAGGCCCGACCAGCAGACAT 5660
Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893
||| || |||||||| || | ||| | || || | |||||| ||||| |||
Sbjct 5661 CCTTTCGGAATCTTGGCTCCCAGAGCCGTATACTTATCCGGATTCTTGAGGAAATCAACA 5720
Query 11894 ATCTCTTCAAGTTC 11907
| ||| | ||| ||
Sbjct 5721 ACCTCCTGAAGCTC 5734
>seq19144
Length=21831
Score = 89.7 bits (98), Expect = 6e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000
|||||||||||||| |||||||| || ||||| || | || ||| | ||| | |||
Sbjct 17933 TGCGGTCTTGGTGTTCCAGCATTAAAAAGGGTGGGAGAAGCATGAGTAAACCATCGTTGT 17874
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
||||| || |||||| | | | ||||||||||| ||| |||||| |||| |
Sbjct 17873 GACATGAAGTGGTATGTTTTAATAGCTGAATCAATGTCATCCTTGTGGATCCCGACAGAA 17814
Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119
|||| ||| | ||||| || || |||| | | | || | || || | | || ||
Sbjct 17813 ACCCTCATTAGCATGTGTTGAGGCCTTTCTACAACCTTTCCCTGGA-CCTTCAACAGGTA 17755
Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167
| |||| ||||| || | ||||| ||| || ||||| |||||||
Sbjct 17754 TGACCTCTCTAGGGTCTTAAATCCAAAATAATCATAATCAAAGTCCCG 17707
>seq13309
Length=30306
Score = 86.0 bits (94), Expect = 8e-12
Identities = 137/196 (70%), Gaps = 3/196 (2%)
Strand=Plus/Minus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
||| || || || ||||| || || || || || |||||| | || ||||| | ||
Sbjct 6356 GTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAACCC 6297
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||| ||| |||| | |||||| |||||||||||||| || || || ||
Sbjct 6296 GCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACGCA 6237
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849
|| ||||||| || | ||||| | ||| | | || | |||||||| ||
Sbjct 6236 GGCGAACGCAATCAGCCTCTCGGCAA---AGCACTCCCCGCCGTCGATCCATTTCAACGC 6180
Query 122850 CCATTTCGCCTTCTTC 122865
||| | ||||||||||
Sbjct 6179 CCACTGCGCCTTCTTC 6164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627652064191200
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