Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq26787 136 5e-27 seq13309 125 9e-24 seq11108 96.9 4e-15 seq25823 87.8 2e-12 >seq26787 Length=21907 Score = 136 bits (150), Expect = 5e-27 Identities = 376/567 (66%), Gaps = 11/567 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||| ||||| || ||||| || || || |||||| ||| || ||||| | || Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| ||||||||| | || || || |||||||||||||| || || || Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||||| | || |||||||||||||| | | | || | ||| |||| ||| Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGA-CTCCCCGCCG--TCGATCCATTTCAACGC 16488 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGAT--CGCTTCAAAGAGTTCCTTC 130264 |||||||||||| ||| ||| || || | |||| ||| ||| |||| | ||| Sbjct 16489 CCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGCGCGGAAAAG-GCGGCTT- 16546 Query 130265 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324 |||||| | ||| |||||||| | || | || || | ||| || | Sbjct 16547 TTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATG 16606 Query 130325 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCT 130384 | ||| | | ||| | ||||||| | ||||| ||| || ||| ||||| | Sbjct 16607 TTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCTTC 16666 Query 130385 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGG 130444 ||| || || |||||| | || || || ||||| | || || || || ||| Sbjct 16667 ATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGG 16726 Query 130445 ATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGG-GTCTTCCAGTCGTCAAGATCCT 130502 | | | | ||||| | | || | | ||| ||| ||| ||||| | || |||| Sbjct 16727 ACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTC--CCAGTGGCGAACGTCCT 16784 Query 130503 TCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCCC 130562 ||||||||||||||||| || ||||| | || ||| ||||| || | |||| Sbjct 16785 GAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCTTTCTTGTACATCTCCC 16844 Query 130563 AGAGGTGGGGATACTTCAGGGGGAACA 130589 ||| || || || | | ||||||| Sbjct 16845 AGATCTGAGGGTATTCAATTGGGAACA 16871 >seq13309 Length=30306 Score = 125 bits (138), Expect = 9e-24 Identities = 329/498 (66%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || | |||||||||||| || |||||||| | ||| |||| |||||| Sbjct 6656 ATACTCTCCGACTCTCTTCTCGAAGAAATTAGTCTTCCCTTGCAACGAGATAAGCTCCAT 6597 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCTGTTTGAGGAGA 129844 |||||||||||||| | || | ||| | || | |||| | || | Sbjct 6596 CCAATCAAATGGGTTCGTCACATTGTAGATT--TTGCTGTAGCCAAGAGAGTCCAGCAAC 6539 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 | ||| | || |||||||||||| | |||| | | ||||| || | | Sbjct 6538 CTATCGGCTACAAACTCAATGTACTGACTCATCAGCACCCCATTCATCCCAACCAACGCG 6479 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || ||||||||||| ||| ||| | |||| || ||||| || || || || || | Sbjct 6478 CAAGGGAGCGCGTCACAGACAAACTCTCTCTCGATATCCACCGCATCGCGGACAATCCCT 6419 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024 | | | |||| || || | | || || | | || ||| || || Sbjct 6418 TTTACGCGCTCCTCGCTGGGCTTCATCTTCATCATCCCGTACAGCAAGCAGGCGAAATCA 6359 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||| || || ||||| || ||||| || || ||||||||| || || ||||| | Sbjct 6358 CAGTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAAC 6299 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||||| ||||||||||| || || || |||||||||||||| || || Sbjct 6298 CCGCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACG 6239 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 130204 || |||||||||| || | ||| |||||| | | | | || | ||| |||| | Sbjct 6238 CAGGCGAACGCAATCAGCCTCTCGGCAAAGCA-CTCCCCGCCG--TCGATCCATTTCAAC 6182 Query 130205 GCCCACTGCGCCTTTTTC 130222 |||||||||||||| ||| Sbjct 6181 GCCCACTGCGCCTTCTTC 6164 >seq11108 Length=39206 Score = 96.9 bits (106), Expect = 4e-15 Identities = 230/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 14151 ||||||||| || | ||| || || || | |||| || ||| || |||| || Sbjct 4666 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 4722 Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCA 14209 || || ||||||||||| || || || || | ||| || || | || ||||| | | Sbjct 4723 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 4782 Query 14210 GGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | || | ||| | | || |||| | || || || ||||||||||| | || || || Sbjct 4783 GCCAATGCCAGCTCCTCT---TTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 4839 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || || || || |||| || || |||| ||||||||||| Sbjct 4840 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 4899 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387 ||||||||||| ||||| | || | | | | |||| | ||| |||||| || |||| Sbjct 4900 AACAAACATCTCGACAAATTCGGAGCCAG-ATATTGAAAAGAATGGGACGCCAGCCTCAC 4958 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || |||||| || || ||||||||||| ||||| ||| Sbjct 4959 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 4999 >seq25823 Length=50596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 227/341 (67%), Gaps = 14/341 (4%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 14151 ||||||||| || | ||| || || || | |||| || ||| || |||| || Sbjct 44494 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 44438 Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 || || ||||||||||| || || || || | ||| || || | || ||||| | Sbjct 44437 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 44378 Query 14212 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 |||| || || | | |||| | || || || ||||||||||| | || || || Sbjct 44377 ---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 44321 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || || || || |||| || || |||| ||||||||||| Sbjct 44320 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 44261 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT-GAAGGGGACGTTAGATTCAC 14387 ||||||||||| ||||| | || | | || |||| | ||| || ||| || |||| Sbjct 44260 AACAAACATCTCGACAAATTCGGAGCCAGAT-ATTGAAAAGAATGGAACGCCAGCCTCAC 44202 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || |||||| || || ||||||||||| ||||| ||| Sbjct 44201 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 44161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618061069895320