Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22]
48,397 sequences; 282,201,865 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq26787 136 5e-27
seq13309 125 9e-24
seq11108 96.9 4e-15
seq25823 87.8 2e-12
>seq26787
Length=21907
Score = 136 bits (150), Expect = 5e-27
Identities = 376/567 (66%), Gaps = 11/567 (2%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||| ||||| || ||||| || || || |||||| ||| || ||||| | ||
Sbjct 16312 GTGCAGACCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGTCCAGGCATCAACCC 16371
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||||| ||||||||| | || || || |||||||||||||| || || ||
Sbjct 16372 TCGCTTCTTCAGCCAGAAAATTGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCA 16431
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206
|||||||| | || |||||||||||||| | | | || | ||| |||| |||
Sbjct 16432 GGCGAACGCTATCAGCCGCTCAGCAAAGGA-CTCCCCGCCG--TCGATCCATTTCAACGC 16488
Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGAT--CGCTTCAAAGAGTTCCTTC 130264
|||||||||||| ||| ||| || || | |||| ||| ||| |||| | |||
Sbjct 16489 CCACTGCGCCTTCTTCGCGACGCAAGGAATCGTCTCGATTGCGCGGAAAAG-GCGGCTT- 16546
Query 130265 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324
|||||| | ||| |||||||| | || | || || | ||| || |
Sbjct 16547 TTTTCTTTCGAATCCTTGATGTAGGTCTCGAGCAGGAGGCTGTACATCTCGGAGTGAATG 16606
Query 130325 ATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCT 130384
| ||| | | ||| | ||||||| | ||||| ||| || ||| ||||| |
Sbjct 16607 TTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCTACCTGGACCTCCTTC 16666
Query 130385 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGG 130444
||| || || |||||| | || || || ||||| | || || || || |||
Sbjct 16667 ATAAACCTGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGG 16726
Query 130445 ATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGG-GTCTTCCAGTCGTCAAGATCCT 130502
| | | | ||||| | | || | | ||| ||| ||| ||||| | || ||||
Sbjct 16727 ACGTGCGTGATGAAGTGGCGCTCGTCGGCAGTTAAGGCGTC--CCAGTGGCGAACGTCCT 16784
Query 130503 TCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCCC 130562
||||||||||||||||| || ||||| | || ||| ||||| || | ||||
Sbjct 16785 GAGAGAGATCTACCTCCTCGGCTGTCCAGAAGGAGGCTTCAGCTTTCTTGTACATCTCCC 16844
Query 130563 AGAGGTGGGGATACTTCAGGGGGAACA 130589
||| || || || | | |||||||
Sbjct 16845 AGATCTGAGGGTATTCAATTGGGAACA 16871
>seq13309
Length=30306
Score = 125 bits (138), Expect = 9e-24
Identities = 329/498 (66%), Gaps = 7/498 (1%)
Strand=Plus/Minus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || || | |||||||||||| || |||||||| | ||| |||| ||||||
Sbjct 6656 ATACTCTCCGACTCTCTTCTCGAAGAAATTAGTCTTCCCTTGCAACGAGATAAGCTCCAT 6597
Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT--CCAATCTGTTTGAGGAGA 129844
|||||||||||||| | || | ||| | || | |||| | || |
Sbjct 6596 CCAATCAAATGGGTTCGTCACATTGTAGATT--TTGCTGTAGCCAAGAGAGTCCAGCAAC 6539
Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904
| ||| | || |||||||||||| | |||| | | ||||| || | |
Sbjct 6538 CTATCGGCTACAAACTCAATGTACTGACTCATCAGCACCCCATTCATCCCAACCAACGCG 6479
Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964
|| ||||||||||| ||| ||| | |||| || ||||| || || || || || |
Sbjct 6478 CAAGGGAGCGCGTCACAGACAAACTCTCTCTCGATATCCACCGCATCGCGGACAATCCCT 6419
Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024
| | | |||| || || | | || || | | || ||| || ||
Sbjct 6418 TTTACGCGCTCCTCGCTGGGCTTCATCTTCATCATCCCGTACAGCAAGCAGGCGAAATCA 6359
Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084
||| || || ||||| || ||||| || || ||||||||| || || ||||| |
Sbjct 6358 CAGTGCAGGCCTTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTCAATCCAGGCATCAAC 6299
Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
|| |||||||||| ||||||||||| || || || |||||||||||||| || ||
Sbjct 6298 CCGCGCTTCTTCAGCCAGAAAATCGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCAACG 6239
Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 130204
|| |||||||||| || | ||| |||||| | | | | || | ||| |||| |
Sbjct 6238 CAGGCGAACGCAATCAGCCTCTCGGCAAAGCA-CTCCCCGCCG--TCGATCCATTTCAAC 6182
Query 130205 GCCCACTGCGCCTTTTTC 130222
|||||||||||||| |||
Sbjct 6181 GCCCACTGCGCCTTCTTC 6164
>seq11108
Length=39206
Score = 96.9 bits (106), Expect = 4e-15
Identities = 230/341 (67%), Gaps = 14/341 (4%)
Strand=Plus/Plus
Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 14151
||||||||| || | ||| || || || | |||| || ||| || |||| ||
Sbjct 4666 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 4722
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCA 14209
|| || ||||||||||| || || || || | ||| || || | || ||||| | |
Sbjct 4723 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 4782
Query 14210 GGCA-TACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268
| || | ||| | | || |||| | || || || ||||||||||| | || || ||
Sbjct 4783 GCCAATGCCAGCTCCTCT---TTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 4839
Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328
|| || || || || || |||| || || |||| |||||||||||
Sbjct 4840 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 4899
Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387
||||||||||| ||||| | || | | | | |||| | ||| |||||| || ||||
Sbjct 4900 AACAAACATCTCGACAAATTCGGAGCCAG-ATATTGAAAAGAATGGGACGCCAGCCTCAC 4958
Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
| || |||||| || || ||||||||||| ||||| |||
Sbjct 4959 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 4999
>seq25823
Length=50596
Score = 87.8 bits (96), Expect = 2e-12
Identities = 227/341 (67%), Gaps = 14/341 (4%)
Strand=Plus/Minus
Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TC 14151
||||||||| || | ||| || || || | |||| || ||| || |||| ||
Sbjct 44494 GTCAAGGATGTCTGCTCTGTTAGTTGCTGCAACCACAATGACGCCAGT---GTTACCCTC 44438
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
|| || ||||||||||| || || || || | ||| || || | || ||||| |
Sbjct 44437 GAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCTCC 44378
Query 14212 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268
|||| || || | | |||| | || || || ||||||||||| | || || ||
Sbjct 44377 ---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTAT 44321
Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328
|| || || || || || |||| || || |||| |||||||||||
Sbjct 44320 GCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACC 44261
Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT-GAAGGGGACGTTAGATTCAC 14387
||||||||||| ||||| | || | | || |||| | ||| || ||| || ||||
Sbjct 44260 AACAAACATCTCGACAAATTCGGAGCCAGAT-ATTGAAAAGAATGGAACGCCAGCCTCAC 44202
Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
| || |||||| || || ||||||||||| ||||| |||
Sbjct 44201 CAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGT 44161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618061069895320
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