Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq26787 118 1e-21 seq11108 114 2e-20 seq25823 111 2e-19 seq23783 104 3e-17 seq13309 96.9 4e-15 seq3669 86.0 7e-12 seq23268 82.4 9e-11 >seq26787 Length=21907 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||||||||| || | || || || || || || || ||||||||||| || | Sbjct 16461 TCCTTTGCTGAGCGGCTGATAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 16402 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||| | |||| ||||| ||||||||||| | ||||| || || |||||||||| Sbjct 16401 TTCTGCTCAATTTTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAAC 16342 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || ||||| || || ||| Sbjct 16341 GAGCTGATCTCGCGAGACGAAGGTCTGCAC 16312 >seq11108 Length=39206 Score = 114 bits (126), Expect = 2e-20 Identities = 247/365 (68%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || ||||| |||||||| || ||||| ||||| | || || || | || ||||| || Sbjct 4721 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 4780 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||||| | | |||| |||| || |||||||| ||||||| || || ||| Sbjct 4781 CCGCCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACTATG 4840 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || || || || || || ||||| || ||||| || || || |||||| Sbjct 4841 CACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACACCA 4900 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| || | || | |||| | ||| ||||| || ||||| Sbjct 4901 ACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGGACGCCAGCCTCACC 4959 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||||||| || ||||| ||||| || || || || ||| || || |||| Sbjct 4960 AGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAACACC 5019 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCCACA 9967 | ||||| || ||| | |||| |||||||||| | |||||| || |||||| Sbjct 5020 TTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACA 5077 Query 9968 ATTTC 9972 | ||| Sbjct 5078 ACTTC 5082 >seq25823 Length=50596 Score = 111 bits (122), Expect = 2e-19 Identities = 249/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || ||||| |||||||| || ||||| ||||| | || || || | || ||||| || Sbjct 44439 TCGAAACCGTCCATCTCAGTTAAAAGCTGGTTCAGGGTCTGCTCTCTCTCGTCATTTCCT 44380 Query 9671 GGCATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 |||| ||||| | | |||| |||| || |||||||| ||||||| || || Sbjct 44379 CC---ACCAATGCCAGCTCCTCTTTGCCTTCCAACCGCATCAATTTCATCAACAAACACT 44323 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 ||||| || || || || || ||||| || ||||| || || || ||| Sbjct 44322 ATGCACGGAGCGTTCTCTTTCGCCTTTTTGAAGAGGTCGCGTACTCGAGAAGCACCGACA 44263 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 |||||||||||||| ||||| || | || | |||| | ||| || || || || Sbjct 44262 CCAACAAACATCTCGACAAA-TTCGGAGCCAGATATTGAAAAGAATGGAACGCCAGCCTC 44204 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| ||||||||| || ||||| ||||| || || || || ||| || || | Sbjct 44203 ACCAGCAATGGCTTTAGCCAGAAGGGTCTTCCCAGTCCCCGGTGGACCAATAAGAAGAAC 44144 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGT--ATCTCTCAGGTTGCTTAAGAAAATCC 9964 |||| ||||| || ||| | |||| |||||||||| | |||||| || ||| Sbjct 44143 ACCTTTCGGAATGCGAGCTCCA--ACGGAAGTAAATCTCTCAGGCTTCTTAAGGAACTCC 44086 Query 9965 ACAATTTC 9972 |||| ||| Sbjct 44085 ACAACTTC 44078 >seq23783 Length=11624 Score = 104 bits (114), Expect = 3e-17 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9613 |||||| | ||| |||||||| || || | |||| || ||| | || | | | | Sbjct 5309 ATCAAGAACATCCGGCCGATTCGTAGCAGCCAACACAATAACACCCGAATTCCCTGA--A 5366 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||||||| ||||||| ||||||||| | Sbjct 5367 AATCCATCCATTTCAGTCAACAGCTGATTAATAGTCTGTTCCCTTTCATCATTTCCACCA 5426 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | |||||| | | ||| | || || |||||||||||||||||||| || ||||| Sbjct 5427 CCAAGACCAGCTCCTCTCTGCCTCCCTACAGCATCAATCTCATCAATGAACACAATGCAA 5486 Query 9734 GG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || ||| ||| ||| ||||| | |||||| || | || || || || Sbjct 5487 GGAGCCTTGGATTT----AGCCTTCTCAAACAAATCCCGGACCCTAGAAGCCCCAACTCC 5542 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| ||||||||| | | || | || || |||||| | || || Sbjct 5543 CACAAACAGCTCCACAAACTCCGAAGCCGCGCAAGAGAAGAAGGGAGTTCCCGCCTCTCC 5602 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | |||| || ||||| ||||||||||| || || Sbjct 5603 GGCGACCGCTCTCGCCAGAAGCGTCTTACCCGTCCCCGG 5641 >seq13309 Length=30306 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||| | || | || || || || ||||| || ||||||||||| || ||| Sbjct 6209 CTTTGCCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTT 6268 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | |||| ||||| |||||||| || | ||||| || | |||||| ||||| Sbjct 6269 CTGCTCGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGA 6328 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || ||||| || || ||| Sbjct 6329 GCTGATCTCGCGAGACGAAGGCCTGCAC 6356 >seq3669 Length=12011 Score = 86.0 bits (94), Expect = 7e-12 Identities = 243/366 (66%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || ||||| || || || ||||| ||||||| ||||||||| | Sbjct 4327 AAACCCATCCATTTCGGTCAACAGCTGATTTATAGTCTGTTCCCTTTCATCATTTCCA-- 4270 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| ||||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 4269 CCGCCCATTCCAGCCCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAACACAATG 4210 Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || || | ||| | ||| ||||| | ||||| || | | || || || || Sbjct 4209 CAAGG-AGCTTTCGACTTAGCCTTCTCAAACAAATCCCTAACCCTCGAAGCTCCAACCCC 4151 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||||| |||||| || | | || | || || ||| || | || || Sbjct 4150 GACAAACAGCTCCACGAATTCCGAAGCAGCGCAGGAGAAGAAAGGAGTCCCCGCCTCTCC 4091 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 || | ||||| || ||||| || || || ||||| ||| || | | | |||| Sbjct 4090 GGCCACGGCTCTTGCCAGAAGCGTTTTCCCGGTACCGGGCGGGCCGACTAACA-AACACC 4032 Query 9910 TCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 | | |||||||| || || | || ||| | || || | |||||| |||||||||| Sbjct 4031 CCTTCGGAATCTTAGCTCCCAATGCAGTGTACTTATCCGGGTTCTTAAGGAAATCCACAA 3972 Query 9969 TTTCTT 9974 |||| Sbjct 3971 CCTCTT 3966 >seq23268 Length=13954 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || ||||| || ||||| ||||| |||||||| ||||||| ||||||||| | Sbjct 6038 AAACCCGTCCATTTCCGTCAACAGTTGATTAATAGTCTGTTCCCTTTCATCATTTCCACC 6097 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | |||||| | | || | || || |||||||||||||||||||| || ||||| Sbjct 6098 ACCAAGACCAGCTCCTCTCTGTCTCCCTACAGCATCAATCTCATCAATGAACACAATGCA 6157 Query 9733 TGG 9735 || Sbjct 6158 AGG 6160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582907949088280