Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linum_20usitatissimum_20[genbank_20GCA_5F000224295.1_202011-08-22] 48,397 sequences; 282,201,865 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq26787 156 5e-33 seq13309 143 3e-29 >seq26787 Length=21907 Score = 156 bits (172), Expect = 5e-33 Identities = 307/445 (69%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 |||||||| || ||||||| | ||||| ||||||||||| || || || || || Sbjct 16753 CGACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 16694 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797 | || ||| | | | | ||| ||||| |||||| | |||||||| || | || Sbjct 16693 CCTCGAGAATCTCGCCGGCAGGTTTATGAAGGAGGTCCAGGTAGCCGAGGCGCGTGCCTT 16634 Query 59798 CTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 ||||| | ||| ||| | ||| || |||||||||| |||| ||| || ||| Sbjct 16633 CTACGGCTTCCAGATCGCG-ATTGAGAACATTCACTCCGAGATGTACAGCCTCCTGCTCG 16575 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | | |||||||| || |||| || | || ||||| || || |||||| | | Sbjct 16574 AGACCTACATCAAGGATTCGAAAGAAAAAAGCCGCCTTTTCCGCGCAATCGAGACGATTC 16515 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCAT 59973 | || || | || || | ||||| || | ||||| || | | |||| || | Sbjct 16514 CTTGC-GTCGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGGCGGGGAG--TCCT 16458 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 |||| | || || ||||| || || ||||| ||||| ||||||||||| || |||| Sbjct 16457 TTGCTGAGCGGCTGATAGCGTTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCT 16398 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | | ||||||||||| || ||||| || | ||||| || |||| ||||||||||||| Sbjct 16397 GCTCAATTTTCTGGCTGAAGAAGCGAGGGTTGATGCCTGGACTGACCTTCTCCAACGAGC 16338 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || || ||||| || || || Sbjct 16337 TGATCTCGCGAGACGAAGGTCTGCA 16313 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCA 60329 |||| ||||||||| ||||||| || || | | ||| | |||| | | | Sbjct 16161 ATGAGTCAGTACATTGAGTTTGTAGCCGATAGGTTGCTGGACTCACTTGGCTACAGCAAA 16102 Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| ||||| ||||| || || ||||||||| |||||| || ||||||||||| Sbjct 16101 ATCTACAACGTGATCAACCCCTTTGATTGGATGGAGCTGATCTCGCTGCAAGGGAAGACC 16042 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 || ||||| |||||| | |||||||| ||| Sbjct 16041 AATTTCTTCGAGAAGAGAGTCGGGGAGTAT 16012 >seq13309 Length=30306 Score = 143 bits (158), Expect = 3e-29 Identities = 304/445 (68%), Gaps = 8/445 (2%) Strand=Plus/Plus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 |||||||| || ||||||| | ||||| ||||||||||| || || || || || Sbjct 5915 CGACGAGCGCCACTTCATCACGCACGTCCTCGCCTTCTTCGCCGCATCCGACGGCATCGT 5974 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTT 59797 | || ||| | | | | || ||||| |||||| | |||||||| || | || Sbjct 5975 CCTTGAGAATCTCGCCGGCAGGTTCATGAAGGAGGTCCAGGTGGCCGAGGCGCGTGCCTT 6034 Query 59798 CTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 ||||| | ||| ||| | ||| || |||||||||| |||| ||| || ||| Sbjct 6035 CTACGGCTTCCAGATCGCG-ATTGAGAACATTCACTCCGAGATGTACAGCCTCCTGCTCG 6093 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | | |||||||| || |||| || ||||||||||||| || || ||| | | Sbjct 6094 AGACCTACATCAAGGATTCGAAAGAAAAAAGCCGTCTGTTCCGTGCAATCGACACGATTC 6153 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCAT 59973 | || || | || || | ||||| || | ||||| || | | |||| | | Sbjct 6154 CTTGC-GTGGCGAAGAAGGCGCAGTGGGCGTTGAAATGGATCGACGGCGGGGAG--TGCT 6210 Query 59974 TTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 |||| | | || || || || || ||||| ||||| ||||||||||| || |||| Sbjct 6211 TTGCCGAGAGGCTGATTGCGTTCGCCTGCGTTGAAGGGATCTTCTTCTCCGGAAGCTTCT 6270 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | | ||||||||||| || ||||| || | ||||| || ||| ||||| ||||||| Sbjct 6271 GCTCGATTTTCTGGCTGAAGAAGCGCGGGTTGATGCCTGGATTGACCTTCTCGAACGAGC 6330 Query 60094 TGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || || ||||| ||||| || Sbjct 6331 TGATCTCGCGAGACGAAGGCCTGCA 6355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548192963065680